BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473696
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35730.1 | Symbols: APUM9, PUM9 | pumilio 9 | chr1:13227324-... 1472 0.0
AT1G35750.1 | Symbols: APUM10, PUM10 | pumilio 10 | chr1:132533... 1179 0.0
> AT1G35730.1 | Symbols: APUM9, PUM9 | pumilio 9 | chr1:13227324-13229796
REVERSE LENGTH=1695
Length=1695
Score = 1472 bits (797), Expect = 0.0
Identities = 917/975 (94%), Gaps = 7/975 (1%)
Strand=Plus/Plus
Query 727 ATGAATCTCGTCTCTATGGTTGAGATTTACGGATCTGTGAACCTAATGGCCAAAGATCAG 786
||| |||||||||| |||||||||||||| |||||||||||| ||||||| |||||||||
Sbjct 725 ATG-ATCTCGTCTCCATGGTTGAGATTTATGGATCTGTGAACTTAATGGCGAAAGATCAG 783
Query 787 ATTGGTTGCAGAGTTTTGCAGAAACTGGTCGAAGAAGGAACGGTTCTTGATGCTAAGGTT 846
||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||
Sbjct 784 ATTGGTTGCAGAGTTTTGCAGAAACTGGTCGAAGAAGGAACATTTCATGAAGCTAAGGTT 843
Query 847 ATATTCCATG-AGATCATTGATCATGTCGTTGAACTCTCCATGGACCCTTTTGGGAATTA 905
||||| | || | |||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 844 ATATTACTTGCA-ATCATTGACCATGTCGTTGAACTTTCCATGGATCCTTTTGGGAATTA 902
Query 906 CATCGTCCAGAAGCTGTTAGAGGTGAGTGATGAGGAACAGAGAACGTTGATTGTGAGTGT 965
||| || ||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 903 CATTGTTCAGAAGCTGTTTGATGTGAGTGATGAGGAACAGAGGACGTTGATTGTGAGTGT 962
Query 966 ATTAACCTCAAAACCAAGGGAGCTTATCCA-AATCTGTCTCAACACTTATGGGACAAGGG 1024
||||| ||||| |||||||||||||| || ||||||||| |||||||||||||||||||
Sbjct 963 GTTAACGTCAAATCCAAGGGAGCTTAT-CAGAATCTGTCTTAACACTTATGGGACAAGGG 1021
Query 1025 TTGTGCAGAAGATGATTGAAACAGTGAAAACAAAACAGCAGATTGCATTGGTGAAGTAC- 1083
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1022 TTGTGCAGAAGATGATTGAAACTGTGAAAACAAAACAGCAGATTGCATTGGTGAAGT-CA 1080
Query 1084 GGTCTAAAACCAGGGTTTCTTGCTCTTGTCAAAGATCTGAATGGCAACCATGTGATACAG 1143
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1081 GGTCTCAAACCGGGGTTTCTTGCTCTTGTCAAAGATCTGAATGGGAACCATGTGATACAG 1140
Query 1144 AGTTGCTTGCAAACCCTTGGCCCTAATGACAACAAGTTTGTGTTAGAAGCTGCTACAAAG 1203
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1141 AGTTGCTTGCAAACCCTTGGCCCTAATGACAATGAGTTTGTGTTAGAAGCTGCTACTAAG 1200
Query 1204 TACTGTGCTGAGATTGCTATTCATCGCCACGGATGCTGTGTTCTTCAATGCTGCCTTTCA 1263
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1201 TACTGTGCTGAGATTGCTATTCATCGACACGGATGCTGTGTTCTTCAATGCTGCATTTCA 1260
Query 1264 AACTCTGTTGGACTGCAACGTGAGAGACTCGTCGCTGAGATATCAAGAAACGCACTTCAC 1323
||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 1261 AACTCTGTTGGACTGCAACGTGAAAGACTCGTCGCTGAGATATCAAGAAACTCGCTTCAC 1320
Query 1324 CTTTCTCAGGATCCTTTTGGGAACTATGTGGTGCAGTACTTAATAGAGCAACAAGTTTCT 1383
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1321 CTTTCTCAGGATCCTTTTGGGAACTATGTGGTGCAGTACTTAATAGATCAACAAGTTTCT 1380
Query 1384 GCGGTGAAGTTGCTGGTTCGGTTTAGAATGCACTACGCCGAGCTAGCAACTCAGAAGTTT 1443
|| |||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||
Sbjct 1381 GCAGTGAAGTTGCTGGTTCAGTTTAGAATGCACTACGCCGAGTTAGCTACTCAGAAGTTT 1440
Query 1444 AGTAGCCATGTGATTGAGAAGTGTCTAAGAAAGTATCCAGAGAGTCGAGCTGAGATCGTC 1503
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1441 AGTAGCCACGTGATTGAGAAGTGTCTAAGGAAGTATCCAGAGAGTCGAGCTGAGATCGTC 1500
Query 1504 CGCGAACTCATCTGTGTTCCAAACTTTGAATATCTTCTGCAGGATCCTTATGCGAACTAT 1563
|| || ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1501 CGTGAGCTCCTCTGTGTTCCAAACTTTGAATATCTTCTGCAAGATCCTTATGCGAACTAT 1560
Query 1564 GTGATCCAAACTGCTCTCTCTGTAACCAAAGGACCTGTTCGTGCTAAATTGGTTGAGAAA 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1561 GTGATCCAAACTGCTCTCTCTGTAACCAAAGGACCTGTTCGTGCTAAATTGGTGGCGAAG 1620
Query 1624 GTTTACAGGTTCGGGAAACTACGGTCGAGCCCTTACTGCAAGAAGATTTTCTCCAAGACC 1683
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1621 GTTTACAGGTACGGGAAACTACACTCGAGCCCTTACTGCAAGAAGATTTTCTCCAAGACC 1680
Query 1684 ATCTTGAAGAAGTGA 1698
|||||||||||||||
Sbjct 1681 ATCTTGAAGAAGTGA 1695
Score = 658 bits (356), Expect = 0.0
Identities = 483/543 (89%), Gaps = 14/543 (3%)
Strand=Plus/Plus
Query 1 ATGGGTTTTGGAGGTTTTCATGGAGATTTCAACATCGGACGAGCTTCAGATCATCGTCCT 60
|||||||||||||||||| ||||||| |||||| || || ||||||| ||||||||||||
Sbjct 1 ATGGGTTTTGGAGGTTTTAATGGAGACTTCAACTTCCGAGGAGCTTCCGATCATCGTCCT 60
Query 61 CTTGGTTCTGATGGGTTCTTAAGGAGTCTCGAGACAAACCCATTTCTTAAAAACCAGTGT 120
||||||||||||||||| ||| ||||||||| ||||||||||||| | ||| |
Sbjct 61 CTTGGTTCTGATGGGTTTTTACCGAGTCTCGACACAAACCCATTTC-T-GAAA--A---- 112
Query 121 TACAACACCAAGAGTGTTGAAGCTCTGGATTTGTGTAAAAAGCTTCACAAAATGGGTATC 180
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 -AC--CA-CAAGAGTGTTGAAGCTCTGGATTTGTGTAAAAAGCTTCACAAAATGGGTATC 168
Query 181 TCTTGTGACATGAGTATCTGGACCAAACCGGAAGAACCGTTCCGGGTCGACCCGGGTGAG 240
||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||
Sbjct 169 TCTTGTGACATGAGTATCTGGACCAAACCCGAAGAACAGTTCCGGGTCGACCCGAGTGAG 228
Query 241 TTTGGGTCTAGAACTCTTCATGGGTCTTCTGGGTTTGACCAGAATCTGAGTGGAGCTTCT 300
|||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 229 TTTGGGGCTAGAACTCTTCATGGGTCTTCTGGGTTTGACCAGAATCTCACCGGAGCTTCT 288
Query 301 CAGATTCATGATGGGTTTCGTAACTTTTCCTCTGTTTGTCTGCAAAACAACAACTTTCAT 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 289 CAGATTCATGATGGGTTTCGTAACTTTTCCTCTGTTCGTCTGCAAAACAACAATTTTCAT 348
Query 361 GGAGTTTCTTCTTCTCCAGGAGAGATGAGATTGCTTGGACATCAAGATTCCTTTAACCCA 420
||||||||| | ||||| |||||||||||||| ||||| | ||||||||||||||||| |
Sbjct 349 GGAGTTTCTCCATCTCCGGGAGAGATGAGATTACTTGGCCGTCAAGATTCCTTTAACCTA 408
Query 421 TACAGATTTGAAGAGATGATGGCTCTTAAAAATCACAGAGATTATCTCTTGGACCACATT 480
|| |||||||||||||| | |||||||| ||||||||||||| |||||| || || ||
Sbjct 409 AACGGATTTGAAGAGATGTTAGCTCTTAAGAATCACAGAGATTTTCTCTTAGATCAGATC 468
Query 481 AACGAAGCCGTAAAGCCTTCTCCTTTTCTCAGAGGTAACGATGCTTTCA-AGGGTTCGTT 539
| ||| || |||||| | |||||||||||||||| ||||||||| ||| | | ||||||
Sbjct 469 CATGAACCCATAAAGCGTCCTCCTTTTCTCAGAGGCAACGATGCTCTCATAAG-TTCGTT 527
Query 540 GAT 542
|||
Sbjct 528 GAT 530
> AT1G35750.1 | Symbols: APUM10, PUM10 | pumilio 10 | chr1:13253398-13255570
REVERSE LENGTH=1587
Length=1587
Score = 1179 bits (638), Expect = 0.0
Identities = 872/985 (89%), Gaps = 16/985 (2%)
Strand=Plus/Plus
Query 720 TTTGCCTATGAATCTCGTCTCTATGGTTGAGATTTACGGATCTGTGAACCTAATGGCCAA 779
||||||| || |||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 609 TTTGCCTCTGGATCTCGTCTCCATGGTTGAGATTTACGGATCTGTGAACTTAATGGCCAG 668
Query 780 AGATCAGATTGGTTGCAGAGTTTTGCAGAAACTGGTCGAAGAAGGAACGGTTCTTGATGC 839
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 669 AGATCAGATTGGGTGCAGAGCTTTGCAGAAACTGGTCGAAGAAGGAACGGTTCTTGATTC 728
Query 840 TAAGGTTATATTCCATGAGATCATTGATCATGTCGTTGAACTCTCCATGGACCCTTTTGG 899
|||||||||||||| |||||||||||| |||||||||||||| |||||||| ||||| ||
Sbjct 729 TAAGGTTATATTCCTTGAGATCATTGACCATGTCGTTGAACTTTCCATGGATCCTTTAGG 788
Query 900 GAATTACATCGTCCAGAAGCTGTTAGAGGTGAGTGATGAGGAACAGAGAACGTTGATTGT 959
|||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct 789 GAATTACATCGTCCAGAAGCTGTTAGTTGTGTCTGATGAGGAACAGAGAACAATGATTGT 848
Query 960 GAGTGTATTAACCTCAAAACCAAGGGAGCTTATCCAAATCTGTCTCAACACTTATGGGAC 1019
|||||| ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 849 GAGTGTGTTAACGTCAAAACCAAGGGAGCTTATCAAAATCTGTCTCAACACTAATGGGAC 908
Query 1020 AAGGGTTGTGCAGAAGATGATTGAAACAGTGAAAACAAAACAGCAGATTGCATTGGTGAA 1079
||||||| | |||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 909 AAGGGTTATACAGAAGATGATTAAAACAGTGAAAACAAAACAACAGATTGCATTGGTGAA 968
Query 1080 GTAC-GGTCTAAAACCAGGG-TTTCTTGCTCTTGTCAAAGA-TCTGAATGGCAACCATGT 1136
|| | | ||| |||| ||| ||||||| ||||||||| || ||| ||||| |||||||
Sbjct 969 GT-CAGCTCTCGAACC-GGGTTTTCTTGTTCTTGTCAACGATTCT-AATGGGTACCATGT 1025
Query 1137 GATACAGAGTTGCTTGCAAACCCTTGGCCCTAATGACAACAAGTTTGT-GTTAGAAGCTG 1195
| |||||||||||||| | ||||| |||||||||||||||||||| ||| ||||| |
Sbjct 1026 GCTACAGAGTTGCTTGGAGTTCCTTGTACCTAATGACAACAAGTTTGTGGTT-GAAGCAG 1084
Query 1196 CTACA-AAGTACTGTGCTGAGATT-GCTATTCATCGCCACGGATGCTGTGTTCTTCAATG 1253
||||| || || |||||| | ||| || | ||||| ||||||||| ||||||||||||
Sbjct 1085 CTACAGAA-TATTGTGCTCA-ATTAGCAACTCATCAATACGGATGCTATGTTCTTCAATG 1142
Query 1254 CTGCCTT-TCAAACTCTGTTGGACTGCAACGTGAGAGACTCGTCGCTGAGATATCAAGAA 1312
| ||||| | |||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1143 CAGCCTTAT-AAACACTGTTGGACTGCAACATGAGAGACTCGTCGCTGAGATATCAAGAG 1201
Query 1313 ACGCACTTCACCTTTCTCAGGATCCTTTTGGGAACTATGTGGTGCAGTACTTAATAGAGC 1372
|| |||||| |||||| || |||||||| ||||||||||||||||||| ||||||||| |
Sbjct 1202 ACTCACTTCGCCTTTCGCAAGATCCTTTCGGGAACTATGTGGTGCAGTGCTTAATAGACC 1261
Query 1373 AACAAGTTTCTGCGGTGAAGTTGCTGGTTCGGTTTAGAATGCACTACGCCGAGCTAGCAA 1432
||||||||||| | ||||| |||||| ||| ||||||| || | | ||||||||| |
Sbjct 1262 AACAAGTTTCTTCAGTGAACTTGCTGCTTCCATTTAGAACACATTGCATCGAGCTAGCGA 1321
Query 1433 CTCAGAAGTTTAGTAGCCATGTGATTGAGAAGTGTCTAAGAAAGTATCCAGAGAGTCGAG 1492
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 CTCAGAAGTTCAGTAGCCATGTGATTGAGAAGTGTCTAAGAAAGTATCCAGAGAGTCGAG 1381
Query 1493 CTGAGATCGTCCGCGAACTCATCTGTGT-TCCAAACTTTGAATATCTTCTGCAGGATCCT 1551
|||||||||||||||| ||| ||| | | ||||||||||||| | |||||||||||||||
Sbjct 1382 CTGAGATCGTCCGCGAGCTCCTCTCT-TATCCAAACTTTGAACAGCTTCTGCAGGATCCT 1440
Query 1552 TATGCGAACTATGTGATCCAAACTGCTCTCTCTGTAACCAAAGGACCTGTTCGTGCTAAA 1611
||||| ||||||||||||||||| ||||||||||||||||| ||| | ||| | |||| |
Sbjct 1441 TATGCAAACTATGTGATCCAAACAGCTCTCTCTGTAACCAAGGGAGCAGTTAGAGCTAGA 1500
Query 1612 TTGGTTGAGAAAGTTTACAGGTTCGGGAAACTACGGTCGAGCCCTTACTGCAAGAAGATT 1671
|| || ||||||||| | ||||| |||||||||| ||||| ||||| ||||||||||||
Sbjct 1501 TTAGTGGAGAAAGTTAAAAGGTTTGGGAAACTACAGTCGAATCCTTATTGCAAGAAGATT 1560
Query 1672 TTCTCCAAGACCATCTTGAAGAAGT 1696
|||||||||||||||||||||||||
Sbjct 1561 TTCTCCAAGACCATCTTGAAGAAGT 1585
Score = 549 bits (297), Expect = 3e-155
Identities = 462/537 (86%), Gaps = 30/537 (6%)
Strand=Plus/Plus
Query 20 ATGGAGA-TTTCAACATCGGACGAGCTTCAGATCATCGTC--C-T-C-----TTGGTTCT 69
||||||| ||| ||| |||||| |||||| |||||||||| | | | |||||||
Sbjct 1 ATGGAGATTTTTAACTTCGGACAAGCTTCCGATCATCGTCGTCTTCCTGATTTTGGTTCA 60
Query 70 GATGGGTTCTTA-AGGAGTCTCGAGACAAACCCATTTCTTAAAAACCAGTGTTACAACAC 128
| |||||| ||| | |||||||| |||||||||||||| || || |||| |||| | |
Sbjct 61 GGTGGGTTTTTACA-AAGTCTCGACACAAACCCATTTCTGAAGAATCAGTATTAC-A-A- 116
Query 129 CAAGAGTGTTGAAGCTCTGGATTTGTGTAAAAAGCTTCACAAAATGGGTATCTCTTGTGA 188
||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 117 CAACAGTGTTGAAGCTCTGGAGTTGTGTAAAAAGCTTAACAAAATGGGTATCTCTTGTGA 176
Query 189 CATGAGTATCTGGACCAAACCGGAAGAACCGTTCCGGGTCGACCCGGGTGAGTTTGGGTC 248
||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||| |
Sbjct 177 CATGAGTATTTGGACCAAACCCGAAGAACCATTCCGGGTCGACCCGGGTGATTTTGGGGC 236
Query 249 TAGAACTCTTCATGGGTCTTCTGGGTTTGACCAGAATCTGAGTGGAGCTTCTCAGATTCA 308
|| ||||||||||| ||||| |||||||||||||||||| | ||||||||||||||||||
Sbjct 237 TAAAACTCTTCATGAGTCTTTTGGGTTTGACCAGAATCTCACTGGAGCTTCTCAGATTCA 296
Query 309 TGATGGGTTTCGTAACTTTTCCTCTGTTTGTCTGCAAAACAACAACTTTCATGGAGTTTC 368
|||||||||||||||||| ||||||||| || | ||||||||||||||||||||||||||
Sbjct 297 TGATGGGTTTCGTAACTTCTCCTCTGTTCGTGTTCAAAACAACAACTTTCATGGAGTTTC 356
Query 369 TTCTTCTCCAGGAGAGATGAGATTGCTTGGAC-ATCAAGATTCCTTTAACCC-ATACAGA 426
| ||||||||||| | | |||||| | | ||||||||||||||||| | || ||
Sbjct 357 TCCTTCTCCAGGA----T----T-GCTTGGCCTA-CAAGATTCCTTTAACCCCA-ACGGA 405
Query 427 TTTGAAGAGATGATGGCTCTTAAAAATCACAGAGATTATC-TCTTGGACCACATTAACGA 485
|||||||||||||||||| ||||| |||||| ||| | || |||| |||||||| || ||
Sbjct 406 TTTGAAGAGATGATGGCTTTTAAAGATCACAAAGACT-TCCTCTTAGACCACATCAATGA 464
Query 486 AGCCGTAAAGCCTTCTCCTTTTCTCAGAGGTAACGATGCTTTCAAGGGTTCGTTGAT 542
| || |||||| |||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 465 ACCCATAAAGCGTTCTCCGTTTCTCAGAGGCAACGATGCTTTCAAGGGTTCGTTGAT 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83935311240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5