BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473698
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35780.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2134 0.0
> AT1G35780.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G78150.2);
Has 145 Blast hits to 144 proteins in 16 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:13277274-13280289
REVERSE LENGTH=1541
Length=1541
Score = 2134 bits (1155), Expect = 0.0
Identities = 1412/1529 (92%), Gaps = 46/1529 (3%)
Strand=Plus/Plus
Query 2 TTTGAAATAGAAGAAGAGTAGCTACCACTCCACTC-TTT--TCT-tctctc----tctct 53
||||||||||||||||||||||||||||||||||| ||| ||| |||||| |||||
Sbjct 16 TTTGAAATAGAAGAAGAGTAGCTACCACTCCACTCTTTTCGTCTCTCTCTCTTTTTCTCT 75
Query 54 ctATATACATCGCCATTGTTATTGCATTCGAAGCTTTTATAGAAGAAGTAAtctctcttt 113
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 76 CTATATACGTCGCCATTGTTGTTGCATTCGAAGCTTTTATAGAAGAAGTAATCTCTC-TT 134
Query 114 tttctctatttctctgtattactttcttttttttGGAGGTTTTGGTGGAGAAGAAGATGG 173
||||||||||||||||||||||||||| |||||| |||| || |||||
Sbjct 135 TTTCTCTATTTCTCTGTATTACTTTCTCTTTTTT-----TTTTCGT---------GATGG 180
Query 174 AGAAAAACACACCGGTGAGGAAACCACACATGTCGACGGCGGATCTATTGACTTGGCCGG 233
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 181 AGAAAAACACACCGGTGAGGAAACCACACATGTCGACGGCGGATCTACTCACTTGGCCGG 240
Query 234 AGAATCAACCGTTTGAGTCTCCCGCCGCCGTAGCTTCTCGCTCCGCCGCTAGATCGCATC 293
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
Sbjct 241 AGAATCAACCGTTTGAGTCTCCCGCCGCCGTATCTTCTCGCTCCGCCGCCAGATCGCACC 300
Query 294 AGCCGTCGGATGGAATCAGCAAAGTTGTATTTGGAGGACAAGTTACTGATGAAGAAGTTG 353
|||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 301 AGCCGTCGGATGGAATAAGCAAAGTCGTATTTGGAGGACAAGTTACAGATGAAGAAGTTG 360
Query 354 AGAGCTTGAACAAGAGGAAGCCTTGTTCAAATTACAAGATGAAAGAGATCACAGGGAGTG 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGAGCTTGAACAAGAGGAAGCCTTGTTCAAATTACAAGATGAAAGAGATCACAGGGAGTG 420
Query 414 GAATATTCTCAGTTTATGAAGAAAATGATGATTCTGAGTTAGGAAGTGCTAAT-CCGGCG 472
|||||||||| || |||||||||||||||||||||||||||| |||||||||| ||| |
Sbjct 421 GAATATTCTCTGTGTATGAAGAAAATGATGATTCTGAGTTAGCAAGTGCTAATTCCGCC- 479
Query 473 ACTAACGGCAAATCAAGAACATTCCAGCAACCACCAGCAGCAATTGTGAGTCACATTTCA 532
|| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 480 ACAAACGGCAAATCAAGAACTTTCCAGCAACCACCAGCAGCAATTATGAGTCACATTTCA 539
Query 533 TTTGGGGAAGAAGAGATTGTTACCCCGAAGAAGCCAGCGACGGTACCAGAAGTGGCGAAG 592
||||| ||||||||||||||||| ||||| |||||||||||||| |||||||| || |||
Sbjct 540 TTTGGAGAAGAAGAGATTGTTACACCGAAAAAGCCAGCGACGGTGCCAGAAGTTGCAAAG 599
Query 593 CAGCGTGAGCTCAGTGGAACATTGGAGTATCAATCTGATGCTAAGCTTAATAAGCAATTC 652
|| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 600 CAACGTGAGCTTAGTGGTACATTGGAGTATCAATCTGATGCTAAGCTTAACAAGCAATTC 659
Query 653 TCAGATGCTAAGTGTAAGGAACTAAGTGGTCATAACATCTTTGCACCACCACCTGAGATT 712
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 TCAGATGCGAAGTGTAAGGAACTAAGTGGTCATAACATCTTTGCTCCACCACCTGAGATC 719
Query 713 AAAGCT-CGTCCTACTGTTCGTGCTTTGGCTTATAAAGACAACTTCGACTTGGGAGAATC 771
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAA-CTTCGTCCTACTGTTCGTGCTTTGGCTTATAAAGACAACTTCGACTTGGGAGAATC 778
Query 772 CGATACCAAACCCGATGGGGAATTGAAGACGGCCAAGAAGATTCCGGATAGGAAATTCAT 831
|||||||||||||||||||||| | |||||||||||||||||| |||||||||| || |
Sbjct 779 CGATACCAAACCCGATGGGGAACTAAAGACGGCCAAGAAGATTGCGGATAGGAAGTTTAC 838
Query 832 GGATTTGTCGGGAAACAACGTATTCAAAGGGGATGCTACGTCTCCCTCTTCAGCCACGGC 891
||||||||||| |||||||| |||||| | |||| | ||||||||||||| ||||||||
Sbjct 839 AGATTTGTCGGGTAACAACGTGTTCAAAAGCGATGTTTCGTCTCCCTCTTCCGCCACGGC 898
Query 892 TGAGAAGCTTCTAAGCACCGCGAAGTTGAAGGAGATAAGTGGCAATGACATATTTGCAGA 951
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 899 TGAGAGGCTTCTAAGCACGGCGAAGTTGAAGGAGATAAGTGGCAATGACATATTTGCTGA 958
Query 952 TGCAAAGGCTCAGTCTCGTGACTACTTTGGCGGCGTTCGTAAACCACCGGGCGGAGAAAG 1011
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 959 TGCGAAGGCTCAGTCTCGTGACTACTTTGGCGGTGTTCGTAAACCACCAGGCGGAGAAAG 1018
Query 1012 CAGCATTGCATTGGTCTAAACCCACTCTACCAATAATAATTATATAGCCCAAGATTAAAG 1071
||||||||||||||||||||||| | | | ||||||||||||||| ||||||||||
Sbjct 1019 CAGCATTGCATTGGTCTAAACCC-C---A--A-TAATAATTATATAGCTCAAGATTAAAA 1071
Query 1072 TTCTCTACAAAAACTTAGAAGGTTCTAACTATTTATCTTCATTAATAGATAATGTACTTT 1131
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1072 TTCTCTACAAAA-CTTAGAAGGTTCTAACTATTTATCTTCATTAATAGATTATGTACTTT 1130
Query 1132 TGGATGtttttttATTTCTATGTTT-CCGGATTTGTGTGATTGAATGGTTATGCAAT-GA 1189
||||||||||| |||||||| ||| |||| |||||||||||||||||||||| ||| ||
Sbjct 1131 TGGATGTTTTT--ATTTCTATATTTTCCGGTTTTGTGTGATTGAATGGTTATG-AATTGA 1187
Query 1190 TCGGAGATTGTTA-CCGGAAAGCTAATCTGGTCTCTTTCGACTTTGTGGAGTTTATTTGT 1248
|| ||| |||||| ||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 1188 TCTGAGTTTGTTAACCGGAAAGCTAATCTGGTCTCTTAGGAATTTGTGGAGTTTGTTTGT 1247
Query 1249 TTTT-GTGAGTTCAGACTTTAATTATGACTC-ATTGTTTGGGTCTGTCTCTGCATTTGTT 1306
|||| ||||||||||||||||| ||||| || |||||||||||||||||||| |||||||
Sbjct 1248 TTTTTGTGAGTTCAGACTTTAACTATGAGTCCATTGTTTGGGTCTGTCTCTGTATTTGTT 1307
Query 1307 GGGTACTTGATTGATTCTATTGATTATTTTGGGGCTAATCTGTTATTTAAGAAAAAAGAT 1366
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1308 GGGTACTTGATTGATTTTGTTGATTATTTTGGGGCTAATCTGTTATTTAAGAAAAA-GAT 1366
Query 1367 TGTGGACCGTTTCTG-CAAAAGCTGTCTTACACGTTTGGTGCAGTGGGTAGGACTGAGAG 1425
||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1367 TGTGGACCGTTTC-GACAAAAGCTGTCTTACACGTTTGGTGCAGTGGATAGGACTGAGAG 1425
Query 1426 CAGATACATAAGATTGGGAAGTCTGTTTCTTTTTTGGAAAGGAACCTTTGGCCCTGGTCT 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1426 CAGATACATAAGATTGGGAAGTCTGTTTCTTTTTTGGAAAGGAACCTTTGGCCATGGTCT 1485
Query 1486 GTCCCAAATGAGAAATATATGTATATAAT 1514
|||||||||||||||| ||||||||||||
Sbjct 1486 GTCCCAAATGAGAAATCTATGTATATAAT 1514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74698410960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5