BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473703
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35830.1 | Symbols: | VQ motif-containing protein | chr1:13... 1328 0.0
> AT1G35830.1 | Symbols: | VQ motif-containing protein | chr1:13321214-13322122
REVERSE LENGTH=909
Length=909
Score = 1328 bits (719), Expect = 0.0
Identities = 846/907 (93%), Gaps = 9/907 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCTGGTAACAGTGGAAGCTTGCAATCTTCAAGCGATGACCATGAGTCTTCCTCA 60
||||||||| |||||||||||||||| |||||||| |||||||| || |||||||| |||
Sbjct 1 ATGGATTCTTGTAACAGTGGAAGCTTACAATCTTCGAGCGATGATCACGAGTCTTCATCA 60
Query 61 ACTGGTGCTCCACCAGATCACTCCTCTTTCTTCCTCCCTCCTTTCCAACAACCACCGTCT 120
||||||||||||| |||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct 61 ACTGGTGCTCCACAAGATCACTCCTCTTTCTTCCTCCCACCCTTCCAACCACCACCGTCT 120
Query 121 TCCTCCACCTTCTACGGCGACCCAACAACcctctcctcttcctcctcctcctccGCTACT 180
|||||||||| |||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 121 TCCTCCACCTACTACGGTGACCCAACAACCCTCTCTTCCTCCTCCTCCTCCTCCGCTACT 180
Query 181 TATCTAAACTTTGTCAACAATCTCATCTCCGATGACATTCTTAACCAAACTCATctcctc 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 TATCTAAACTTTGTCAACAATCTCATCTCCGACGACATTCTTAACCAAACTCATCTCCTC 240
Query 241 cctcctccacctccacca---ccacctcctcctcctccctcTTCTTCCCGAAACCCTAGA 297
||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTCCTCAACCTCCACCACCTCCTCCTCCTCCTCCTCCCTCTTCTTCCCGAAACCCTAGA 300
Query 298 AAACGAACAAGAGCTTCAAGAAGAGCTCCTACCACTGTTCTCACCACCGACACTTCTAAC 357
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 AAACGAACAAGAGCTTCAAGAAGAGCTCCTACAACTGTTCTCACCACCGACACTTCTAAC 360
Query 358 TTCAGAGCTATGGTTCAAGAATTCACCGGCGTCCCTGCCTCTCCCTTCTCTCACCCTTTC 417
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 TTCAGAGCTATGGTTCAAGAATTCACCGGCGTCCCTGCCTCTCCTTTCTCTCACCCTTTC 420
Query 418 TCCTCCACTACTCGCCGCTTCGATATTTTCCGATCTCCCTCCGATCCTCTTACTTACAAC 477
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 421 TCCTCCACTACTCGCCGCTTCGATATTTTCCGATCTCCTTCCGATCCTCTTACTTATAAC 480
Query 478 CCTTTTCGTCCTATCCCTCAAAAACCTTTGAATCCTTCATCTTCTTCTTTGCTCCACCAT 537
||||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||| |
Sbjct 481 CCTTTTCGTCCTATCCCTCAAAAACCTTTGAATCCTTCAACATCTTCTTTACTCAACCTT 540
Query 538 CATCACCACACAACTACTTCCATGACCTTTCCCGATATGCCTCTCCCTCAAAATCACCAA 597
|||||||||||||||||||||||||| ||||| ||| | ||||||||||||| |||||||
Sbjct 541 CATCACCACACAACTACTTCCATGACGTTTCCTGATCTACCTCTCCCTCAAACTCACCAA 600
Query 598 GTCTCTACATTTCAGTCTCTTTTATCTCATCAACATCATCATCAAACAACACTTTCCTCT 657
|| ||||| || ||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 601 GTTTCTACGTTCCAGTCTCTTTTATCTCATCAACATCATCATCAACCAACACTCTCCTCT 660
Query 658 CTTCACGACCTTGACACAATAAATCTCGGAGCATTACAACAAACTCACCATCCAACGCCT 717
||||||||||||||| | || ||||| |||||||||||||||| ||||||||| ||| ||
Sbjct 661 CTTCACGACCTTGACTCGATGAATCTTGGAGCATTACAACAAAATCACCATCCTACGGCT 720
Query 718 GATGAT-A-A-CCACCATCTAATGATGAGGCAGTTCTCGGAGTTTGACCGCCGGCCGGAA 774
|||||| | | |||||| ||||||||||||||||||||||||||||| |||||| | |||
Sbjct 721 GATGATGACAACCACCAGCTAATGATGAGGCAGTTCTCGGAGTTTGATCGCCGGACAGAA 780
Query 775 AAGGCACCGGAGATTCATAATAATATCTCCTCTTCTTC---AGCTCCGATCAAAGGCTCA 831
||| ||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 781 AAGCCACCGGAGATTCATAATAACATTTCCTCTTCTTCTTCAGCTCCGATCAAAGGCTCT 840
Query 832 TCAGGTACTACTACTACTACAACAACAACAGTTGATCCCTGGATTAGCCCTACAGATTCC 891
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 841 TCAGGTACTACTACTACTACAACAACAACAGTTGATCCCTGGATTTGCCCTACAGATTCC 900
Query 892 AATAATT 898
|||||||
Sbjct 901 AATAATT 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43854410331
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5