BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473703 Length=898 Score E Sequences producing significant alignments: (Bits) Value AT1G35830.1 | Symbols: | VQ motif-containing protein | chr1:13... 1328 0.0 > AT1G35830.1 | Symbols: | VQ motif-containing protein | chr1:13321214-13322122 REVERSE LENGTH=909 Length=909 Score = 1328 bits (719), Expect = 0.0 Identities = 846/907 (93%), Gaps = 9/907 (1%) Strand=Plus/Plus Query 1 ATGGATTCTGGTAACAGTGGAAGCTTGCAATCTTCAAGCGATGACCATGAGTCTTCCTCA 60 ||||||||| |||||||||||||||| |||||||| |||||||| || |||||||| ||| Sbjct 1 ATGGATTCTTGTAACAGTGGAAGCTTACAATCTTCGAGCGATGATCACGAGTCTTCATCA 60 Query 61 ACTGGTGCTCCACCAGATCACTCCTCTTTCTTCCTCCCTCCTTTCCAACAACCACCGTCT 120 ||||||||||||| |||||||||||||||||||||||| || ||||||| |||||||||| Sbjct 61 ACTGGTGCTCCACAAGATCACTCCTCTTTCTTCCTCCCACCCTTCCAACCACCACCGTCT 120 Query 121 TCCTCCACCTTCTACGGCGACCCAACAACcctctcctcttcctcctcctcctccGCTACT 180 |||||||||| |||||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct 121 TCCTCCACCTACTACGGTGACCCAACAACCCTCTCTTCCTCCTCCTCCTCCTCCGCTACT 180 Query 181 TATCTAAACTTTGTCAACAATCTCATCTCCGATGACATTCTTAACCAAACTCATctcctc 240 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 181 TATCTAAACTTTGTCAACAATCTCATCTCCGACGACATTCTTAACCAAACTCATCTCCTC 240 Query 241 cctcctccacctccacca---ccacctcctcctcctccctcTTCTTCCCGAAACCCTAGA 297 ||||||| |||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 241 CCTCCTCAACCTCCACCACCTCCTCCTCCTCCTCCTCCCTCTTCTTCCCGAAACCCTAGA 300 Query 298 AAACGAACAAGAGCTTCAAGAAGAGCTCCTACCACTGTTCTCACCACCGACACTTCTAAC 357 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 301 AAACGAACAAGAGCTTCAAGAAGAGCTCCTACAACTGTTCTCACCACCGACACTTCTAAC 360 Query 358 TTCAGAGCTATGGTTCAAGAATTCACCGGCGTCCCTGCCTCTCCCTTCTCTCACCCTTTC 417 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 361 TTCAGAGCTATGGTTCAAGAATTCACCGGCGTCCCTGCCTCTCCTTTCTCTCACCCTTTC 420 Query 418 TCCTCCACTACTCGCCGCTTCGATATTTTCCGATCTCCCTCCGATCCTCTTACTTACAAC 477 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 421 TCCTCCACTACTCGCCGCTTCGATATTTTCCGATCTCCTTCCGATCCTCTTACTTATAAC 480 Query 478 CCTTTTCGTCCTATCCCTCAAAAACCTTTGAATCCTTCATCTTCTTCTTTGCTCCACCAT 537 ||||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||| | Sbjct 481 CCTTTTCGTCCTATCCCTCAAAAACCTTTGAATCCTTCAACATCTTCTTTACTCAACCTT 540 Query 538 CATCACCACACAACTACTTCCATGACCTTTCCCGATATGCCTCTCCCTCAAAATCACCAA 597 |||||||||||||||||||||||||| ||||| ||| | ||||||||||||| ||||||| Sbjct 541 CATCACCACACAACTACTTCCATGACGTTTCCTGATCTACCTCTCCCTCAAACTCACCAA 600 Query 598 GTCTCTACATTTCAGTCTCTTTTATCTCATCAACATCATCATCAAACAACACTTTCCTCT 657 || ||||| || ||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 601 GTTTCTACGTTCCAGTCTCTTTTATCTCATCAACATCATCATCAACCAACACTCTCCTCT 660 Query 658 CTTCACGACCTTGACACAATAAATCTCGGAGCATTACAACAAACTCACCATCCAACGCCT 717 ||||||||||||||| | || ||||| |||||||||||||||| ||||||||| ||| || Sbjct 661 CTTCACGACCTTGACTCGATGAATCTTGGAGCATTACAACAAAATCACCATCCTACGGCT 720 Query 718 GATGAT-A-A-CCACCATCTAATGATGAGGCAGTTCTCGGAGTTTGACCGCCGGCCGGAA 774 |||||| | | |||||| ||||||||||||||||||||||||||||| |||||| | ||| Sbjct 721 GATGATGACAACCACCAGCTAATGATGAGGCAGTTCTCGGAGTTTGATCGCCGGACAGAA 780 Query 775 AAGGCACCGGAGATTCATAATAATATCTCCTCTTCTTC---AGCTCCGATCAAAGGCTCA 831 ||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||| Sbjct 781 AAGCCACCGGAGATTCATAATAACATTTCCTCTTCTTCTTCAGCTCCGATCAAAGGCTCT 840 Query 832 TCAGGTACTACTACTACTACAACAACAACAGTTGATCCCTGGATTAGCCCTACAGATTCC 891 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 841 TCAGGTACTACTACTACTACAACAACAACAGTTGATCCCTGGATTTGCCCTACAGATTCC 900 Query 892 AATAATT 898 ||||||| Sbjct 901 AATAATT 907 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43854410331 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5