BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473706
Length=1771
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36060.1 | Symbols: | Integrase-type DNA-binding superfamil... 1605 0.0
> AT1G36060.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:13454496-13456331 REVERSE LENGTH=1836
Length=1836
Score = 1605 bits (869), Expect = 0.0
Identities = 1095/1202 (91%), Gaps = 23/1202 (2%)
Strand=Plus/Plus
Query 591 ttttttgtagtatatttttttttGTATTTCAGGGAACTCCGATGGCGGATTTCTTCGGCG 650
|||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||| |
Sbjct 629 TTTTTTGTAGTACATTTTTTTTTGTATTTCAGGAAACTCCGATGGCGGATCTCTTCGGTG 688
Query 651 GTGGCCATGGCGGCGAGCTTATGGAAGCACTTCAACCTTTTTACAAAAGTGCTTCCACGT 710
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 GTGGCCACGGCGGCGAGCTTATGGAAGCACTTCAACCTTTTTACAAAAGTGCTTCCACGT 748
Query 711 CTGCCTCAGATTCTGCGTTTGCGTCCCCAAACGATGCGTTTGCGTCTGCGCCAAACGACC 770
|||| ||| || |||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 749 CTGCTTCAAATCCTGCGTTTGCGTCCTCAAACGATGCGTTTGCGTCTGCCCCAAACGACC 808
Query 771 CATTTTCTTCTTCCTCTTACTATAATCCTCATGCATCTTTCTTCCCTTCACATTCCACAA 830
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 809 TATTTTCTTCTTCTTCTTACTATAATCCTCATGCATCTTTATTCCCTTCACATTCCACAA 868
Query 831 CCCCTTACCCGGATCTTTATTCCGGATCCATGACCTATCCATC---ATTCGGGTCGGATC 887
|| ||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 869 CCTCTTACCCGGATATTTATTCTGGATCCATGACCTATCCATCTTCATTCGGGTCGGATC 928
Query 888 TTCAACAACCCGAAAACTACTAGTCTCAGTTCCATTACCAAAACAATATCACTTACTCTC 947
|||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |||
Sbjct 929 TTCAACAACCCGAAAACTACCAATCTCAGTTCCATTACCAAAACACTATCACTTACACTC 988
Query 948 ATCAAGA-AA-A-CACTTGTATGCTAAACTTTATTGACCCGAGCCAACCAGGTTTTCTAA 1004
| ||||| || | |||||| ||||| ||||| ||||| ||||||||||| |||||| | |
Sbjct 989 ACCAAGACAACAACACTTGCATGCTTAACTTCATTGAGCCGAGCCAACCGGGTTTTATGA 1048
Query 1005 CCCAACCTGGTCCG-GCCTCGGGTTCGGTTTCAAAGCCCGCCAAACTCTATCGAGGAGTG 1063
||||||| |||||| | ||||||||||||||||| || || || |||||| ||||||||
Sbjct 1049 CCCAACCGGGTCCGAGT-TCGGGTTCGGTTTCAAAACCGGCTAAGCTCTATAGAGGAGTG 1107
Query 1064 AGGCAAAGGCACTGGGGAAAATGGGTCGCGGAGATCCGTTTACCCAGGAACCGAACCCGA 1123
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 AGGCAAAGACATTGGGGAAAATGGGTCGCGGAGATCCGTTTACCCAGGAACCGAACCCGA 1167
Query 1124 CTCTGGCTAGGAACATTCGACACGGCTGAAGAAGCCGCGTTGGCTTATGATCGCGCCGCG 1183
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 CTTTGGCTCGGAACATTCGACACGGCTGAAGAAGCCGCGTTGGCTTATGATCGCGCCGCG 1227
Query 1184 TTCAAGCTTCGTGGTGACTCGGCTCGGCTTAATTTTCCAGCTCTCCGTTACCAAACTGGC 1243
|| ||||||||||||||||||||||||||||| || ||||||||||| |||||||| |||
Sbjct 1228 TTTAAGCTTCGTGGTGACTCGGCTCGGCTTAACTTCCCAGCTCTCCGATACCAAACCGGC 1287
Query 1244 TCGTCTCCGGGGGATTCCGGCGAATACGGACCTATTCAAGCTGCCGTTGACGCCAAGCTG 1303
||||||||| ||| |||||||||| || ||||||||||||||||| ||||| || ||
Sbjct 1288 TCGTCTCCGTCTGATACCGGCGAATATGGTCCTATTCAAGCTGCCGTAGACGCTAAACTA 1347
Query 1304 GAAGCCATATTAGCCGAGCCGAAGAATCAGCCGGGCAAAACAGAGAGGCCATCGAGGAAA 1363
|||||||||||||| |||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 1348 GAAGCCATATTAGCTGAGCCGAAGAATCAGCCGGGCAAAACGGAGAGGACGTCGAGGAAA 1407
Query 1364 CGAGCTAGAGCCGCGGCTTCTTCGGCTGAGCAGCCGGCAGCGCCACAACAACATTCCGGG 1423
||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1408 CGAGCTAAAGCCGCGGCTTCTTCAGCTGAGCAGCCGTCAGCGCCACAACAACATTCCGGG 1467
Query 1424 TCCGGTGAAAGTGACGGGTCGGGTTCGCCGACGTCGGATGTTATGGTGCAGGAGATGTGC 1483
|| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1468 TCGGGTGAAAGTGATGGGTCGGGTTCACCGACTTCGGATGTTATGGTGCAGGAGATGTGC 1527
Query 1484 GAAGAGCCGGAGATGCCTTGGAATGAAAATTTCATGCTTGGCAAGTGTCCTTCTTATGAG 1543
||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1528 CAAGAGCCAGAGATGCCATGGAATGAAAATTTCATGCTCGGCAAGTGTCCTTCTTATGAG 1587
Query 1544 ATCGATTGGGCTTCAATTTTATCATGAAAAATTAGGATTCtattcatttttatttatttt 1603
|| |||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||
Sbjct 1588 ATAGATTGGGCTTCAATTTTATCGTGAAAAATTAGGATTCAATTCATTTTTATTCATTTT 1647
Query 1604 aa-ttcaat--atgtt-ttgta---ttt----tt-t-agctgtgcttaaaatttgtaatt 1650
|| || | || || || || ||| || | |||||||| ||||||||||||||
Sbjct 1648 AACTTGTTTGTATTTTCTTTTAAACTTTAGGGTTATTAGCTGTGCGTAAAATTTGTAATT 1707
Query 1651 tagcattttGTATGAATGTAATGCAAGTGTGTAAATTATGGACAGCTTAAGCTTTTTTGT 1710
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1708 TAGCATTTTGTATGAATGTAATGCAAGTGTGTAAATTATGGACAGCTCAAGCTTTTTTGT 1767
Query 1711 TCATGCCGTACTATGTAGATCTCT-CTTCTTTTCTCTTAATTAAAATGAATTTGGTTAGT 1769
||||||||||| ||||||| | || ||||||||||||||||| |||||||| ||||||||
Sbjct 1768 TCATGCCGTACCATGTAGACC-CTTCTTCTTTTCTCTTAATTGAAATGAATATGGTTAGT 1826
Query 1770 AT 1771
||
Sbjct 1827 AT 1828
Score = 857 bits (464), Expect = 0.0
Identities = 557/599 (93%), Gaps = 18/599 (3%)
Strand=Plus/Plus
Query 1 AAGGTGAGGTTGAGAGCATCTTCCAAAagagagagag--agtgtgtgt--gagagagtga 56
||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 1 AAGGTGAGGTTGAGAGCATCTTCCAAAAGAGAGAGTGTTTGTGTGTGTGAGAGAGAGTGA 60
Query 57 gtgtgggtgagagaa-aaaaaaaaaGATTGAGAGATTAAAATTTGAGTGAAATTAGGGTT 115
||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 GTGTGAGTGAGAGAAGAAAAAAAAA-ATTGAGAGATTAAAATTTGAGTGAAATTAGGGTT 119
Query 116 TATCTCTCTTCTTGTTTTCTTTGCTTCGTTTCATCTTCAAACCAAAA-ATAGAAACTCTT 174
||| |||||||||| |||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 120 TAT-TCTCTTCTTGCTTTCTTTGCTTCGTTTCATCTTCAAACCAAAAGAAAAAAACTCTT 178
Query 175 CCCTGTCCTGTTTAATCATCTGTTGTCTTTCTTGAGAAAACACAAATCACGATTTTCTTA 234
|| |||||||| || ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 179 CCATGTCCTGTCTATTCATCAGTCGTCTTTCTTGAGAAAACACAAATCACGATTTTCTTA 238
Query 235 TGACGTGTTGCTTTACGAGTTTATATTTTGCCAAAACTCATCTAAAACGACAAACTTTTG 294
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGAAGTGTTGCTTTATGAGTTTATATTTTGCCAAAACTCATCTAAAACGACAAACTTTTG 298
Query 295 TTTAAAATTTGTATTTG-AAAGTGGTTTCAAGAAAACGAGATCCATCAAAAATATTATGA 353
||||||| ||||||||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 299 TTTAAAA-TTGTATTTGAAAAGTGTTTTCAAGAAAACGATATCCATCAAAAATATTATGA 357
Query 354 ATTTTTCTGTCAATTAATATTCTTTAATTTTATTCTTTTACAGAGTTGATCAACTTCATG 413
||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||
Sbjct 358 TTTTTTCTGTCAATTAATATTC-----TTTCATTCTTTTATAGAGTTGATCAACTTCATG 412
Query 414 GGCattttttagttccctcaagttttgatcctctt-ttttaatttatttttt-gttgata 471
||||||||||||||||||||||||||||||||||| ||||| ||| |||||| |||||||
Sbjct 413 GGCATTTTTTAGTTCCCTCAAGTTTTGATCCTCTTATTTTA-TTTCTTTTTTTGTTGATA 471
Query 472 aatttgttttagttttgATCTATGGAGGTTGCTTATTTCAAACCTCGTTGATCAATTTTA 531
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 472 AATTTATTTTAGTTTTGATCTATGGAGGTTGCTTATTTCAAACCTCGTTGATCACTTTTA 531
Query 532 TTTCTGTaaaaaactaaaaaCCAGTCTTTGAATTTTTTCTAAAAAGACAGGttttattt 590
|||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TTTCTGTATAAACCAAAAAACCAGTCTTTGAATTTTTTCTAAAAAGACAGGTTTTATTT 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87599951025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5