BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473719
Length=1421
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36320.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2146 0.0
> AT1G36320.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G37920.1);
Has 93 Blast hits to 90 proteins in 22 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses
- 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr1:13671814-13674098
FORWARD LENGTH=1466
Length=1466
Score = 2146 bits (1162), Expect = 0.0
Identities = 1341/1427 (94%), Gaps = 13/1427 (1%)
Strand=Plus/Plus
Query 1 TCTCCGGCTAAAACCCTTTCTTCTATCATCTCTGTGAAAGCTT--TGTTCTTTCAAAGAA 58
||||||||||||||||||||||||||||||| || |||||||| | ||| |||||||||
Sbjct 3 TCTCCGGCTAAAACCCTTTCTTCTATCATCTATGCGAAAGCTTCATCTTC-TTCAAAGAA 61
Query 59 AATGGTTTCCGTTTTATTCCAATCTTCTTGTTCTTGTTCACTTTCTAACTTCCCCTCTGT 118
||||||||| || |||||||||||||| ||||| ||||||||||||| ||| | ||||||
Sbjct 62 AATGGTTTCAGTGTTATTCCAATCTTCATGTTCCTGTTCACTTTCTAGCTTTCGCTCTGT 121
Query 119 AAAATTCGGAGCTCGTGTT-GTTTCTCCTCTGTATTTCGCCGGAAATCATGTACATGTCA 177
|||||||||||| ||| || || |||||||||||||||||||| |||||||| |||||||
Sbjct 122 AAAATTCGGAGCCCGT-TTAGTCTCTCCTCTGTATTTCGCCGGCAATCATGTTCATGTCA 180
Query 178 CTTCCGGTGGTCTTCCAATCGGAAAAGGAAGTTTATTGAACTTCAAGAGTGAAAGACCTC 237
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 CTTCCGGTAGTCTTCCAATCGGAAAAGGAAGTTTATTGAACCTCAAGAGTGAAAGACCTC 240
Query 238 AGAGATTTGTTATCTCAGCTGTTGTGGATGATAAAAGTGTTGTAGCTAAAGAGGAGAAGA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGAGATTTGTTATCTCAGCTGTTGTGGATGATAAAAGTGTTGTAGCTAAAGAGGAGAAGA 300
Query 298 AAGACGG-T-GGATCAGAAGTGGTTGTAGATAACCAGAGAATGATCAAAGTTTGTGATAA 355
|||| || | || ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGATGGTTCTGA--AGAGGTTGTTGTAGATAACCAGAGAATGATCAAAGTTTGTGATAA 358
Query 356 GCTTATTGAGGTTTTTATGGTTGATAAGCCTACTCCATCTGATTGGAGAAGACTCTTAGC 415
||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 359 GCTTATTGAGGTTTTTATGGTTGATAAGCCTACACCATCTGATTGGAGAAGATTGTTAGC 418
Query 416 TTTTAGCAAAGAATGGGATAGTATCCGGCCACATTTCTACAAACGGTGTCAGGAACGAGC 475
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 419 TTTTAGCAAAGAATGGGATAGTATACGGCCACATTTCTATAAACGGTGTCAGGAACGAGC 478
Query 476 GGATTCTGAGGATAATCCTGAGATGAAGCATAAGGTTCATCGGCTTGCAAGAAAGCTCAA 535
|||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 479 TGATTCTGAGGATAACCCTGAGATGAAGCATAAGGTTCATCGACTTGCAAGGAAGCTCAA 538
Query 536 GGAGGTTGATGAAGATATTCAAAGGCATAATGAGCTTCTCAATGTTATCAAGAGGACACC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GGAGGTTGATGAAGATATTCAAAGGCATAATGAGCTTCTCAATGTTATCAAGAGGACACC 598
Query 596 ACCGGCTGAAATTGGTGAACTTGTTGCCAGGCGTCGTAAGGATTTCACAAATGAGTTTTT 655
||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 599 ACCAGCTGAAATTGGTGAACTTGTTGCTAGGCGTCGTAAAGATTTCACAAACGAGTTTTT 658
Query 656 CGAGCATTTGCATACTGTTGCAGAATCCTACTATAACAATCCGGATGAGCAAAACGCTCT 715
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 659 TGAGCATTTGCATACTGTTGCTGAATCCTACTATGACAATCCGGATGAGCAAAATGCTCT 718
Query 716 TGCATCACTTGGGAAGTTGTCTATCGCGGCTGTACAAGCATATGACACTTCAACAGAAAG 775
||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 719 TGCGTCACTTGGGAAGTTGTCTATAGCTGCTGTACAAGCTTATGACACTTCAACAGAAAG 778
Query 776 CATTGACGCACTAAACGCTGCGGAATTGAAGCTCCAGGACATAATCAATTCCCCTTCTCT 835
|||||| || ||||| ||||||||| ||||||| |||||||| ||||| || ||||| ||
Sbjct 779 CATTGATGCGCTAAATGCTGCGGAAATGAAGCTTCAGGACATTATCAACTCTCCTTCGCT 838
Query 836 TGATGCTGCCTGCAGAAAGATTGATAGTTTAGCTGAGAAGAATCAACTTGATTCTGCGTT 895
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 839 TGATGCTGCCTGTAGAAAGATTGATAGTTTGGCTGAGAAGAATCAACTTGATTCTGCGTT 898
Query 896 GGTTCTTATGATCACAAAAGCTTGGTCTGCTGCTAAGGAATCCAACATGATGAAAGAAGA 955
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 899 GGTTCTTATGATCACTAAAGCTTGGTCGGCTGCTAAGGAATCCAACATGATGAAAGAAGA 958
Query 956 GGTAAAAGACATATTGTATCACTTGTACGTAACAGCAAGAGGGAATCTGCAGAGGCTTAT 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 959 GGTAAAAGACATATTGTATCACTTGTACGTAACAGCAAGAGGGAATCTGCAGAGGCTGAT 1018
Query 1016 GCCGAAAGAAGTGAGAATACTTAAGTATCTACTATCGATAGAGGATCCCCAAGAACAGAT 1075
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1019 GCCGAAAGAGGTGAGAATACTTAAGTATCTACTATCAATAGAGGATCCCCAAGAACAGAT 1078
Query 1076 GAGCGCTCTACAAGACGCTTTTACCCCTGGGGACGAGCTCGAAGGGACTGATGTAGACTA 1135
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AAGCGCTCTACAAGATGCTTTTACCCCTGGGGACGAGCTCGAAGGGACTGATGTAGACTA 1138
Query 1136 CTTATACACGACGCCTGAGCATTTGCAGAGCTTGATGAAAACAGTGTTGGAGGCGTATCA 1195
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1139 CTTATACACGACGCCTGAGCATTTGCAGAGCTTGATGAAAACGGTGTTGGAAGCGTATCA 1198
Query 1196 TTTCAGCAGAGAAGGGAGTCTAGTGAAGGAAGCAAAGGACCTTATGCATCCTGAGCTCAT 1255
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1199 TTTCAGCAGAGAAGGGAGTCTAGTGAAGGAAGCAAAAGACCTTATGCATCCTGAGCTCAT 1258
Query 1256 CGCCAAAATCGAACAACTCAAGAAGCTTATTGAAAAGAAGTATATGTGATCAAGAT-TTT 1314
|||||||||||||||||||||||||||| ||||||||||||||||||||| || | |||
Sbjct 1259 CGCCAAAATCGAACAACTCAAGAAGCTTGTTGAAAAGAAGTATATGTGATAAAAAACTTT 1318
Query 1315 ACAGATCCTAAGCTTTTCTTTCATTTGTTACTATGTATGTGTTTGTGTATGGTGTATGAC 1374
|||||||||||||| | | | |||||||||||||||||| ||||| |||||||||||||
Sbjct 1319 ACAGATCCTAAGCTCT-CGTA-ATTTGTTACTATGTATGT-TTTGTATATGGTGTATGAC 1375
Query 1375 ATTCTTCAGGTTTCCGGTTCACACATATATTTGATACCACCATAAGA 1421
|||||||||||||| | ||||||||||||| ||||||||||||||||
Sbjct 1376 ATTCTTCAGGTTTCTGTTTCACACATATATGTGATACCACCATAAGA 1422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70029760275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5