BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473721
Length=1015
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36390.1 | Symbols: | Co-chaperone GrpE family protein | ch... 1147 0.0
> AT1G36390.1 | Symbols: | Co-chaperone GrpE family protein |
chr1:13701668-13703572 REVERSE LENGTH=1031
Length=1031
Score = 1147 bits (621), Expect = 0.0
Identities = 784/859 (91%), Gaps = 25/859 (3%)
Strand=Plus/Plus
Query 1 TCCAACAATGGCGATTTCTTTCGTAATCGATCCTTCCAT-TGCTCCTTGCTTCT-C--CT 56
||||||||||||||||||||||| ||||||||||||||| | |||||||||||| | ||
Sbjct 42 TCCAACAATGGCGATTTCTTTCGCAATCGATCCTTCCATAT-CTCCTTGCTTCTCCTTCT 100
Query 57 --TCT-C--C-GC-TC--CAAGAACCATACCTTTACG--A-AACCTCCATTTCCATGGCA 104
||| | | | || ||| |||| |||||||||| | |||||||||||||||||||
Sbjct 101 CCTCTCCATCTTCTTCATCAAAAACCTTACCTTTACGAAACAACCTCCATTTCCATGGCA 160
Query 105 G------ACCAATATCTCCATTGATTTCAAAACCCAATCTACGATTCCCAATCTTCTCTG 158
| ||||||||||||| | ||||||||||||| || | |||||||||||||||||
Sbjct 161 GACCTTCACCAATATCTCCACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTG 220
Query 159 CTCACCAATCTAATAATAGTGAAGAAGCGAATTCAAAGCAACGAGCAGATGTAAATACCC 218
|||||||| ||||||| ||||||||||||||||||||||| | |||||||||||| ||||
Sbjct 221 CTCACCAAACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACCC 280
Query 219 TAATTAGGTCTTATAAACAAGCTC-TCTTTAATGGAGACGAAAGCTCAGTTGCAGAAATC 277
|||||||||| ||||||||||||| || | || |||||||||| ||||||| ||||||||
Sbjct 281 TAATTAGGTCATATAAACAAGCTCTTC-TCAACGGAGACGAAACCTCAGTTACAGAAATC 339
Query 278 GAAACGATGTTTTGCAAAATCGAGAAAGAGAAGAACAAAATGGATCAGAAGGTTTTATCA 337
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 340 GAAACGATGTTTTGCAAAATCGAGAAGGAGAAGAATAAAATGGATCAAAAGGTTTTATCT 399
Query 338 TTATCAATGAAGATAGCTTCAGAGAAAGAGACCAAAATCCGATTACAAGCTGATTTTGAT 397
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 400 TTATCAATGAAGATAGCTTCAGAGAAAGAGATGAAAATTCGATTACAAGCTGATTTTGAT 459
Query 398 AATACAAGGAAGAAGCTTGATAAAGATAGGCTTAGTACAGAGTCTAATGCAAAAGTTCAG 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 AATACAAGGAAGAAGCTTGATAAAGATAGGCTTAGTACAGAGTCTAATGCAAAAGTTCAG 519
Query 458 ATTATGAAGAGTCTTTTACCAATTATTGATAGTTTTGAGAGAGCTAAGCTACAGGTTAAA 517
||| | ||| ||||||||| ||||||||||||||||||| ||||||| ||||||||| |
Sbjct 520 ATTCTTAAGTCTCTTTTACCTATTATTGATAGTTTTGAGAAAGCTAAGTTACAGGTTAGA 579
Query 518 GTTGATACTGATAAGGAGAAGAAGATCGATACGAGTTATCAGGGGATTTATAGGCAATTT 577
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 580 GTTGATACTGATAAGGAGAAGAAGATTGATACGAGTTATCAAGGGATTTATAGGCAATTT 639
Query 578 GTTGAGGTTTTGAGACATCTTCGTGTTTCGGCTATTGCAACTGTTGGGAAGCCTTTTGAT 637
||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 640 GTTGAGGTTTTGAGATATCTTCGTGTTTCGGTTATTGCAACTGTTGGCAAGCCTTTTGAT 699
Query 638 CCTTTGTTGCACGAGGCTATATCACGAGAAGAATCTGAAGTGGTTAAAGCAGGGATAATA 697
|||||||||||||||||||| ||||| ||||||||||| | |||||||||||||||||||
Sbjct 700 CCTTTGTTGCACGAGGCTATTTCACGGGAAGAATCTGAGGCGGTTAAAGCAGGGATAATA 759
Query 698 ACCGAGGAGCTGAACCGGGGATTTGTTCTAGGAGATCGTGTTCTGAGACCAGCAAAGGTT 757
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 ACCGAGGAGCTGAACAAGGGATTTGTTCTAGGAGATCGTGTTCTGAGACCAGCAAAGGTT 819
Query 758 AAAGTCTCTTTAGGACCCGTCAAAAAGAAGACTCCTTCACCTGCTGAGGAGATAACACCT 817
||||| ||||||||||||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 820 AAAGTTTCTTTAGGACCCGTCAACAAGAAGACTCCTTCAGCTGCTGAGGAAATAACACCT 879
Query 818 TCTGCTTGAGTTCGATGTC 836
|||||||||||||||||||
Sbjct 880 TCTGCTTGAGTTCGATGTC 898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49731805530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5