BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473723

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36640.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   342    9e-94


> AT1G36640.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, 
root; BEST Arabidopsis thaliana protein match is: unknown 
protein (TAIR:AT1G36622.1); Has 14 Blast hits to 14 proteins 
in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr1:13853171-13853687 REVERSE LENGTH=337
Length=337

 Score =  342 bits (185),  Expect = 9e-94
 Identities = 219/235 (93%), Gaps = 4/235 (2%)
 Strand=Plus/Plus

Query  50   AAAATATGTACAAACTCACGGTTCGTATACTGATTTTGAGTTTTCTTTTGTTCTCTGGAT  109
            |||||||||||||||||||| || ||||||| | | |||||||||||||||| |||||||
Sbjct  100  AAAATATGTACAAACTCACGCTTTGTATACTAACTCTGAGTTTTCTTTTGTTATCTGGAT  159

Query  110  TATCAAATACGGTATTAGCCCGAGTACGATATGAATCTCCAAGCCAAAGGAAGAAAATAG  169
            ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct  160  TATCAAATACGGTATTAGCCCGAGTACAATATGAATCTCCAAGCCAAAGGAACAAAATAG  219

Query  170  GAAAAGAAGTTTGGGATCAAACACTCTTTACCGAGA--TCAAGATTGGTGCAGCAGGCAG  227
            |||||||||||||||||||||||||  |||  ||||  ||||||| |||||| |||||||
Sbjct  220  GAAAAGAAGTTTGGGATCAAACACT-ATTA-AGAGATCTCAAGATCGGTGCATCAGGCAG  277

Query  228  TAATTCAGGGAGAGCTCCTTCATGTAATAATAGTTGTAAACCTAACCGGCCTTAA  282
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  278  TAATTCAGGGAGAGCTCCTTCATGTAATAATAGTTGTAAACCTAACCGGCCTTAA  332



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12969079242


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5