BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473739
Length=2585
Score E
Sequences producing significant alignments: (Bits) Value
AT1G42440.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1882 0.0
> AT1G42440.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948),
Protein of unknown function DUF663 (InterPro:IPR007034);
BEST Arabidopsis thaliana protein match is: P-loop containing
nucleoside triphosphate hydrolases superfamily protein
(TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins
in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833;
Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes -
905 (source: NCBI BLink). | chr1:15895285-15900055 REVERSE
LENGTH=2741
Length=2741
Score = 1882 bits (1019), Expect = 0.0
Identities = 1130/1184 (95%), Gaps = 6/1184 (1%)
Strand=Plus/Plus
Query 522 AGGTTGCTGATTTGATGGCTTTTGTTGCATCTGCAAGCGCTCCGTGGGAAGAGAATAGCT 581
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 544 AGGTTGCTGATTTGATGGCTTTTGTTGCATCTGCAAGTGCTCCGTGGGAAGAGAATAGCT 603
Query 582 CTAACTTCATAGATTCATTT-GGAAGTCAGTGTCTTTCTGTGTTTAGATCAATTGGTTTA 640
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 604 CTAACTTCATAGATTC-TTTCGGAAGTCAGTGTCTTTCTGTGTTTAGATCAATTGGTCTA 662
Query 641 CCAAGCACCACTGTGTTGATCCGTGATTTACCTAGTGATGTGAAAAAGAAAAATGAGATG 700
|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 663 CCAAGCACTACTGTGTTGATCCGTGATTTGCCCAGTGATGTGAAAAAGAAAAATGAGATG 722
Query 701 AAAAAGATGTGTGCCTCTCAACTTGCTTCTGAATTTCCCGAGGATTGTAAGTTTTATCCA 760
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 723 AAAAAGATGTGTGCCTCTCAACTTGCTTCTGAATTTCCTGAGGATTGTAAGTTTTATCCA 782
Query 761 GCAGATACCAGAGATGAGTTGCATAAGTTTATGTGGTTATTCAAGGCACAAAGGCTTACC 820
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 783 GCAGATACCAGAGATGAGTTGCATAAGTTTATGTGGTTATTCAAGGCGCAAAGGCTTACT 842
Query 821 GTACCTCACTGGCGAAGTCAACGACCATATGTTGTGGCTCAG-AAGGTTGGGATGCTGGT 879
|| ||||||||||||||||||||| |||| ||||||||| | |||| ||||||||||||
Sbjct 843 GTGCCTCACTGGCGAAGTCAACGATCATACATTGTGGCTC-GCAAGGCTGGGATGCTGGT 901
Query 880 GGATGATGAAAGCTCAGGAAAGTGCACTCTACTTCTCTCTGGTTACTTGCGTGCTCGCAA 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 GGATGATGAAAGCTCAGGAAAGTGCACTCTACTTCTCTCTGGTTACTTGCGTGCTCGCAA 961
Query 940 ACTGTCTGTAAATCAGCTGGTCCACGTTTCTGGCGTTGGTGATTTTCAATTCTCCAAAAT 999
||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 962 ACTGTCTGTAAATCAACTGGTCCATGTTTCTGGCGTTGGGGATTTTCAATTCTCCAAAAT 1021
Query 1000 TGAAGTGCTGAAGGATCCATTTCCTTTGAATGAAAGGAAAAATCAGAATTCCATGGAATT 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TGAAGTGCTGAAGGATCCATTTCCTTTGAATGAAAGGAAAAATCAGAATTCCATGGAATT 1081
Query 1060 AGATGCTTCACATGATGAAGAGGTGTTGAAGTCTCTGGTTCCTGATCCCATGAAACAAGA 1119
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1082 AGATGATTCACATGATGAAGAGGTATTGAAGTCTCTGGTTCCTGATCCCATGAAACAAGA 1141
Query 1120 GCCTTTAGTAGTTGAAAACATTCCAGATCCTTTAGCAGGGGAACAGACATGGCCAACAGA 1179
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1142 GCCTTTAGTAATTGAAAACACTCCAGATCCTTTAGCAGGGGAACAGACATGGCCAACAGA 1201
Query 1180 GGAAGAAATGGCTGAGGCTGACAAAATTCAGAAACATGGAAATG-TAAAGAAGAAGACTT 1238
|||||||||||||||||||||||||| |||||| || || | | |||||||||||||||
Sbjct 1202 GGAAGAAATGGCTGAGGCTGACAAAAATCAGAAGCAGGGCAG-GCTAAAGAAGAAGACTT 1260
Query 1239 TGCCGCGAGGGACTTCAGAATATCAGGCTGCTTGGATTGTGGATGACACAGATGAAGAGG 1298
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1261 TGCCGCGAGGGACTTCAGAATATCAGGCTGCTTGGATTGTGGATGAAACAGATGAAGAGG 1320
Query 1299 ATTCCGATAATGGTGATTCCGATGATAACGGCATGGTGTTGGATAGAGGAGACGAATCCA 1358
||||||||||||||||||| |||||||| || ||||| |||||||||||||| || ||||
Sbjct 1321 ATTCCGATAATGGTGATTCTGATGATAATGGTATGGTATTGGATAGAGGAGAGGATTCCA 1380
Query 1359 ATCAAAAAGGAAGGTATGACCAAGAATTTGAGGATGATGAAAAATCACTGAACCTGCGTG 1418
||||| |||||| |||||||||||||||||||||||| | ||||||| |||||||||| |
Sbjct 1381 ATCAAGAAGGAATGTATGACCAAGAATTTGAGGATGACGGAAAATCATTGAACCTGCGGG 1440
Query 1419 ATATTGATACTGAAACTCAGAATGAATCGGAAATGATGGACGATGAAGACTTGACAGAGG 1478
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
Sbjct 1441 ATATTGATACTGAAACTCAGAATGAATCCGAAATGGTGGACGATGAAGACTTGACAGAAG 1500
Query 1479 AACAAATTAAGGATGAAATCAAGAAAATCAAAGAGGCATATGCTGAGGATGAGGAATTTC 1538
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 1501 AACAAATTAAGGATGAAATCAAGAAAATCAAAGAGGCATATGCTGATGACGAAGAATTTC 1560
Query 1539 CAGATGAAGTAGAGACTCCCATTGATGTTCCTGCAAGAAGACGTTTTGCAAAGTACAGGG 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 CAGATGAAGTAGAGACTCCCATTGATGTTCCTGCAAGAAGACGTTTTGCAAAGTACAGGG 1620
Query 1599 GTCTGAAATCCTTTAGAACCTCCTCGTGGGATCCAAATGAGTCTTTACCTCAGGACTATG 1658
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 GTCTTAAATCCTTCAGAACCTCCTCGTGGGATCCAAATGAGTCTTTACCTCAGGACTATG 1680
Query 1659 CCAGAATTTTTGCTTTTGATAATGTCGCCAGGACTCAAAAGCTT 1702
| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1681 CTAGAATTTTTGCTTTTGATAATGTCGCAAGGACTCAAAAGCTT 1724
Score = 1334 bits (722), Expect = 0.0
Identities = 841/896 (94%), Gaps = 17/896 (2%)
Strand=Plus/Plus
Query 1703 ATGATTGTGTACCAACTTGGGTCATATGTACGGCTGCATATTAAAGAAGTGCCTCTTGGT 1762
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1765 ATGATTGTGTACCAA-TTGGGTCATATGTACGGCTGCATATTAAAGAAGTGCCTCTTGGT 1823
Query 1763 GCTGCCTCTAAACTATCCTCCCTTGTGAACACAACGAAACCCATTATAGGATTTGGGCTT 1822
||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 1824 GCTGCCTCTAAACTATCTTCTCTTGTGAACACAACGAAACCAATTATAGGATTTGGGCTT 1883
Query 1823 CTGCAGCATGAATCCAAGATGTCGGTTCTGCATTTTAGCGTAAAGAAGTATGATGGTTAC 1882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1884 CTGCAGCATGAATCCAAGATGTCGGTTCTGCATTTTAGCGTAAAGAAGTATGATGGTTAC 1943
Query 1883 GAAGCTCCTATTAAAACAAAAGAAGAGCTTATGTTCCATGTTGGTTTCCGCCAATTCATT 1942
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1944 GAAGCTCCTATTAAAACAAAAGAAGAGCTAATGTTCCATGTTGGTTTCCGTCAATTCATT 2003
Query 1943 GCAAGGCCGGTATTTTCAACCGACAATTTCAGCTCAGACAAGCACAAGATGGAGAGATTC 2002
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2004 GCAAGGCCGGTATTTGCGACCGACAATTTCAGCTCAGACAAGCACAAGATGGAGAGATTC 2063
Query 2003 CTGCATCCAGGGCGTTTCTCGTTGGCTTCAATATACGGTCCAATATCTTTCCCACCACTT 2062
|||||||||||| ||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 2064 CTGCATCCAGGGTGTTTCTCGTTGGCTTCAATATACGGCCCCATATCTTTCCCACCCCTT 2123
Query 2063 CCTTTGGTTGTTCTGAAGATTTCTGAAGGGTCGGATGCTCCTGCCGTGGCTGCCCTTGGT 2122
|||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct 2124 CCTTTGGTAGTTCTGAAGATTTCTGAAGGGTCGGATCCTCCTGCCATTGCTGCCCTTGGT 2183
Query 2123 TCCTTGAAAAGCGTAGACACC-AACAAAATAATTTTAAAGAAGATAATATTAACTGGGTA 2181
||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2184 TCCTTGAAAAGCGTAGA-ACCCAACAAAATAATCTTAAAGAAGATAATATTAACTGGGTA 2242
Query 2182 TCCTCAGAGAGTGTC-AAAGATGAAAGCATCAGTCAGATATATGTTCCACAACCCAGAAG 2240
||||||||||| || ||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 2243 CCCTCAGAGAGTATCGAAA-ATGAAAGCTTCAGTCAGATATATGTTCCACAACCCCGAAG 2301
Query 2241 ATGTGAAATGGTTCAAGCCTGTTGAAGTGTGGTCAAAATGCGGGCGTCGTGGTCGTGTGA 2300
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 2302 ACGTGAAATGGTTCAAGCCTGTTGAAGTATGGTCAAAATGCGGGCGTCGTGGTCGCGTGA 2361
Query 2301 AGGAGCCAGTGGGCACACATGGGGCAATGAAATGCATATTCAATGGAGTGGTTCAGCAAC 2360
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2362 AGGAACCAGTAGGCACACATGGGGCAATGAAATGCATATTCAATGGAGTGGTTCAACAAC 2421
Query 2361 ATGACATAGTGTGCATGAACTTGTACAAGCGCGCTTATCCCAAGTGGCCTGAACGTCTGT 2420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2422 ATGACGTAGTGTGCATGAACTTGTACAAGCGCGCTTATCCCAAGTGGCCTGAACGTCTGT 2481
Query 2421 ACCCGCAGCTTCTCTGATTCAAATATATAAAATGAAGATGATGATGTTCAAGTTTCTCTG 2480
|||| ||||||||||||||| ||| | | |||||||||||||||||||||||||||||||
Sbjct 2482 ACCCACAGCTTCTCTGATTCGAATTTTTTAAATGAAGATGATGATGTTCAAGTTTCTCTG 2541
Query 2481 A-TT--CTAC-TT-T-C---G-TAATTTATGGTGGTGGTTTAGTTGAAGTCCTCCAGTTT 2530
| || | || || | | | |||||||||||||||||||||| |||||||||||||||
Sbjct 2542 AATTGACGACATTCTTCTTTGGTAATTTATGGTGGTGGTTTAGTGGAAGTCCTCCAGTTT 2601
Query 2531 TGTCCTGTATGTGATAAAAATATACAAGTTTT-TTCCTTCATTGCTCACAATACAT 2585
||||||||||||||||||||||| ||| |||| ||| || ||||||||| ||||||
Sbjct 2602 TGTCCTGTATGTGATAAAAATATGCAAATTTTCTTCTTT-ATTGCTCACTATACAT 2656
Score = 623 bits (337), Expect = 3e-177
Identities = 405/438 (92%), Gaps = 4/438 (1%)
Strand=Plus/Plus
Query 32 GAAGCCATGGGACGCTCTCGAGTTCAAGTTAACAAAGCTCACAAGACACGTTTCTCCTCT 91
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 111 GAAGCCATGGGACGCTCTCGAGTTCAAGTTAACAAAGCTCACAAGACTCGTTTCTCCTCT 170
Query 92 AAATCTTCTCGCAATCTCCACAGGACTTCCCTCCAAGATAGCAACCGGATTGGGAAATCG 151
||||||||||| |||||||| || || ||| |||||||| ||||||||||||||||
Sbjct 171 AAATCTTCTCGTAATCTCCATAGAACCAACCTTCAAGATAGTGGCCGGATTGGGAAATCG 230
Query 152 GATAACAACTATGTTAAAGGTGCTAAAGCTGCTCGTGTTCAGCGTGGAAAGATGATTCGA 211
|||| |||||||||||||| |||||||||||||||||||| ||||| |||||| || ||
Sbjct 231 GATAGTAACTATGTTAAAGGAGCTAAAGCTGCTCGTGTTCAACGTGGTAAGATGCTTAGA 290
Query 212 GAGCAGAAAAGAGCAGCAGTTTTGAAGGAGAAGAGAGCATCAGGAGG-ATTACACAGTGC 270
|||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 291 GAGCAGAAGAGAGCAGCAGTTTTGAAGGAGAAGAGAGCATCAGGAGGAATTA-ACAGTGC 349
Query 271 TCCTCGTGTTATCGTTTTGTTTCCTCTCTCTGCTTCTGTGGAATTGAATTCACTTGGTGA 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TCCTCGTGTTATCGTTTTGTTTCCTCTCTCTGCTTCTGTGGAATTGAATTCACTTGGTGA 409
Query 331 AGATGTTTTAAAGCTATTGTCTTCTGATGGTTCTGGAAATTG-TTCTTCAACAGTTGCAT 389
||||||||| ||| | || ||||||||||||||||||| ||| |||||| ||||||||||
Sbjct 410 AGATGTTTTGAAGTTGTTATCTTCTGATGGTTCTGGAA-TTGCTTCTTCGACAGTTGCAT 468
Query 390 CTTCTGAGTATAAGCTAAGAGCAACTGTCTTAAAGGCCCCTCACGGAGATCTTCTGACAT 449
||||||||||||||||| |||||||||| |||||||| ||||| || |||||||||||||
Sbjct 469 CTTCTGAGTATAAGCTACGAGCAACTGTGTTAAAGGCGCCTCATGGGGATCTTCTGACAT 528
Query 450 GTATGGAAATGGCCAAGG 467
||||||||||||||||||
Sbjct 529 GTATGGAAATGGCCAAGG 546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128327040194
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5