BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473742
Length=593
Score E
Sequences producing significant alignments: (Bits) Value
AT1G42480.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 918 0.0
> AT1G42480.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF3456 (InterPro:IPR021852);
Has 177 Blast hits to 177 proteins in 59 species:
Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 0; Plants
- 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
| chr1:15936230-15938863 FORWARD LENGTH=787
Length=787
Score = 918 bits (497), Expect = 0.0
Identities = 564/596 (95%), Gaps = 5/596 (1%)
Strand=Plus/Plus
Query 1 AGACACAGATCGGAA-CATTTTGAGTAAGAATGGCGAAGCTGATGCTCTTCACCGCCGTT 59
||| ||||||||||| | |||||||||||||||||||||| ||||||||||||||||
Sbjct 39 AGAGACAGATCGGAAGGA-GTTGAGTAAGAATGGCGAAGCTGGTGCTCTTCACCGCCGTA 97
Query 60 ATTATCGCGATTATCTCCCACGGAGCCTCCGTCGATGACAAATGCGCCGCTTGTAACGCC 119
|||||||| ||| ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 98 ATTATCGCTATTTTCTCCCATGGATCCTCCGTCGATGACAAATGCGCCGCTTGTAACGCC 157
Query 120 GTCGCAGAGGAATTAGAGTTACAGCTTTTAAAGGAAAAGCCACGAAACCATCTTGATATG 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 GTCGCTGAGGAATTAGAGTTACAGCTTTTAAAGGAAAAGCCACGAAACCATCTTGATATG 217
Query 180 AGAAACCGGCTAAATTCTAAAGGCCAGCGTGAAGGAAAGGTTATTGATTACAGAATAAGC 239
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 218 AGAAACCGGCTCAATTCTAAAGGCCAGCGTGAAGGAAAGGTCATTGATTACAGAATAAGC 277
Query 240 GACCTGAGGGTGGTTGATTTGTTGGACGGGCTGTGTGATAGAATGCAGGACTATACTCTA 299
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 278 GACCTGAGGGTGGTTGATTTGTTGGACGGTCTGTGTGATAGAATGCAGGACTATACTCTA 337
Query 300 CAAAGAG-TGGAATCTAAGAATAGACAATGGGTGAAAGTGGGAAATTTTGACAATCTAAC 358
|||| || ||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 338 CAAA-AGGTGGAACCTAAGAATAGACAATGGGTGAAAGTAGGAAATTTTGACAATCTAAC 396
Query 359 AAATAAACAGGAAGCTAAAGCGCATGCAAATGACATTTCAACTTATTGTGGAAGATTGCT 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 AAATAAACAGGAAGCGAAAGCGCATGCAAATGACATTTCAACTTATTGTGGAAGATTGCT 456
Query 419 TGAAGAAACTGAAGATGAGCTTGGTGAGGTAATAAAGAATGGCTCCCTGAAAGCAGGAGA 478
|| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 457 GGAGGAAACTGAAGATGAGCTAGGTGAGGTGATAAAGAATGGCTCCCTAAAAGCAGGAGA 516
Query 479 AGTCCGCAAGGTTCTGTGTCAAACTTTAAGTAACCACTGCAGCCAATCAAGTGAAACAGA 538
|||||| |||||||||||||||||||| |||||||||||| | |||||||||||||||||
Sbjct 517 AGTCCGAAAGGTTCTGTGTCAAACTTTGAGTAACCACTGCCGACAATCAAGTGAAACAGA 576
Query 539 CTCAGAAGATGAGGAGGACGACGATGCAGATGAATTATAGCTCAATCCAGT-AAAA 593
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 577 CTCAGAGGATGAGGAGGACGACGATGCAGATGAATTATAACTCAATCCAGTGAAAA 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28532995496
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5