BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473744
Length=1462
Score E
Sequences producing significant alignments: (Bits) Value
AT1G42560.1 | Symbols: MLO9, ATMLO9 | Seven transmembrane MLO f... 2385 0.0
AT1G54215.1 | Symbols: | proline-rich family protein | chr1:20... 52.8 9e-06
> AT1G42560.1 | Symbols: MLO9, ATMLO9 | Seven transmembrane MLO
family protein | chr1:15980135-15983328 REVERSE LENGTH=1457
Length=1457
Score = 2385 bits (1291), Expect = 0.0
Identities = 1409/1465 (96%), Gaps = 11/1465 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGGAGGTGGTGGTGGTGGAGGAGGAGGCGAAGGTCCACGACAGCTAGATCAGACC 60
||||||||| ||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 1 ATGGCTGGA---GGTGGTGGTGGAGGAGGTGGCGAAGGTCCAAGACAGCTAGACCAGACC 57
Query 61 CCGACTTGGGCCGTTTCTACAGTTTGTGGTGTTATCATCTTAATCTCCATTATTTTGGAA 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 58 CCGACTTGGGCCGTTTCTACAGTTTGTGGTGTTATCATCTTGATCTCCATTATTTTGGAA 117
Query 121 CTCATCATTCACAAAGTCGGCGAGGTTTTCGAACGAAAGAAGAAGAAAGCTTTGTTTGAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CTCATCATTCACAAAGTCGGCGAGGTTTTCGAACGAAAGAAGAAGAAAGCTTTGTTTGAA 177
Query 181 GCTCTTGAGAAGATTAAAAATGAGCTTATGGTTTTGGGATTTATTTCTCTGCTTCTAACA 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 178 GCTCTTGAGAAGATTAAAAATGAGCTTATGGTTTTGGGATTTATTTCCCTGCTTCTAACA 237
Query 241 TTTGGCCAAAACTACATTGCGAGCATATGTGTTCCATCAAGATACGGTCATGCAATGTCA 300
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 238 TTTGGCCAAAACTACATTGCGAGCATATGTGTTCCATCAAGATACGGCCATGCAATGTCT 297
Query 301 TTTTGCGGTCCGTATGATGGACCTAGTGAAGATCATGAT-GATAAAAAGCTCAAGAAAAC 359
||||| ||||| ||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 298 TTTTGTGGTCCATATGATGGACCTAGTGAAG---ATGATCG-TAAAAAGCTCAAGAAAAC 353
Query 360 AGACCACGCAATGCGTATTCTCTCCTCCATTCAACGTCGTTCTTTGGCTGACGCTCCTCC 419
|||||| |||||||||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 354 AGACCATGCAATGCGTATTCTCTACTCTGTTCAACGTCGTTCTTTGGCCGACGCTCCTCC 413
Query 420 AGTGAATTGCAAGAAAGATTATGTCGCACTTATATCACTAAACGCATTACATCAAATTCA 479
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 414 AGTAAATTGCAAGAAAGATTATGTCGCACTTATATCATTAAACGCATTACATCAAGTGCA 473
Query 480 TATATTCATATTCTTCTTGGCCGTGTTCCATGTGATATATAGTGCTATAACCATGATGCT 539
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 474 TATATTCATATTCTTCTTGGCCGTGTTCCATGTTATATATAGTGCTATAACCATGATGCT 533
Query 540 TGGAAGAGCCAAGATTCGTGGCTGGAAAGTATGGGAGCAAGAGGTCATCCATGAACAAGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TGGAAGAGCCAAGATTCGTGGCTGGAAAGTATGGGAGCAAGAGGTCATCCATGAACAAGA 593
Query 600 AATGATGAATGATCCATCAAGATTTAGACTCACACATGAGACATCATTTGTCCGCGAACA 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 594 AATGATGAATGATCCATCAAGATTTAGACTCACACATGAGACATCATTTGTCCGAGAACA 653
Query 660 TGTCAATTCTTGGGCTAGCAATAAATTTTTCTTCTACGTTATGTGCTTCTTCCGTCAAAT 719
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 654 TGTCAATTCTTGGGCTAGCAATAAATTCTTCTTCTACGTTATGTGCTTCTTCCGTCAAAT 713
Query 720 ACTTAGATCAGTGAGGAAGTCTGACTACTTGACAATGCGACATGGATTCATAAGTGTTCA 779
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 714 ACTTAGATCAGTGAGGAAGTCTGATTACTTGACAATGCGACATGGATTCATAAGTGTTCA 773
Query 780 TTTGGCACCTGGTATGAAGTTTGATTTTCAAAAGTACATCAAAAGATCTTTGGAAGATGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 774 TTTGGCACCTGGTATGAAGTTTGATTTTCAAAAGTACATCAAAAGATCTTTGGAAGACGA 833
Query 840 CTTCAAGGTGGTTGTGGGAATAAGACCCGAGCTATGGGCCTTTGTAATGttttttttACT 899
||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 834 CTTCAAGGTGGTTGTAGGAATAAGACCCGAGCTTTGGGCCTTTGTAATGTTGTTTTTACT 893
Query 900 CTCCGATGTTCACGGATGGTATATTACTGCCGTAATCACCATGATTCCTCCTCTATTAAC 959
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 894 CTTCGATGTTCACGGATGGTATGTTACTGCCGTAATCACCATGATTCCTCCTCTATTAAC 953
Query 960 TCTAGCCATAGGAACAAAACTTA-AAGCCATTATATCGTACATGGCATTGGAGATTCAAG 1018
||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 954 ACTAGCCATAGGAACAAAGCT-ACAAGCCATTATATCGTACATGGCATTGGAGATTCAAG 1012
Query 1019 AGAGACATGCAGTAATTCAAGGGATGCCAGTTGTCAACGTCTCAGACCAACATTTTTGGT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 AGAGACATGCAGTAATTCAAGGGATGCCAGTTGTCAACGTCTCAGACCAACATTTTTGGT 1072
Query 1079 TTGAAAAACCCGCTCTAGTACTTCATATGATCCACTTTGTTCTGTTTCAGAATGCTTTTG 1138
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1073 TTGAAAAACCCGATCTAGTACTTCATATGATCCACTTCGTTCTGTTTCAGAATGCTTTTG 1132
Query 1139 AGATTACTTAttttttttGGATATGGTATGAGTTTGGGCTAAGGTCCTGTTTTCATCACC 1198
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 AGATAACTTATTTTTTTTGGATATGGTATGAGTTTGGGCTAAGGTCCTGTTTTCATCACC 1192
Query 1199 ATTTTGGCCTTATAATCATTCGTGTCTGTCTAGGGGTAGTCGTACAATTCCTATGCAGTT 1258
|||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||
Sbjct 1193 ATTTTGGCCTTATAATCATTCGTGTCTGCCTAGGGGTGGGAGTACAATTCCTATGCAGTT 1252
Query 1259 ATATCACACTGCCCCTTTATGCTCTCGTAACTCAGATGGGATCGACTATGAAGCGATCAG 1318
|||||||| |||||||||| |||||||| |||||||||||||| || |||||||||||||
Sbjct 1253 ATATCACATTGCCCCTTTACGCTCTCGTCACTCAGATGGGATCCACAATGAAGCGATCAG 1312
Query 1319 TGTTTGATGAACAAACTTCAAAAGCATTAGAACAATGGCATAAGAAGGCGAGGAAAAAGA 1378
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 TGTTTGATGAGCAAACTTCAAAAGCATTAGAACAATGGCATAAGAAGGCGAGGAAAAAGA 1372
Query 1379 ATGAAAAGTGAGAATAATTGGCTTCTCCTTT-AATATATGGATAGACCAAATTTAACAGT 1437
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1373 ATGAAAAGTGAGAATAATTGGCTTCTCCTTTTAATCTATGGATAGACCAAATTTAACAGT 1432
Query 1438 CTAATAGTTTGGTTACTTAGTAGTC 1462
||||||||||||||||||| |||||
Sbjct 1433 CTAATAGTTTGGTTACTTAATAGTC 1457
> AT1G54215.1 | Symbols: | proline-rich family protein | chr1:20243118-20243627
FORWARD LENGTH=510
Length=510
Score = 52.8 bits (28), Expect = 9e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 7 GGAGGTGGTGGTGGTGGAGGAGGAGGCG 34
||||||||||||||||||||||||||||
Sbjct 185 GGAGGTGGTGGTGGTGGAGGAGGAGGCG 158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72087982620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5