BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473746
Length=731
Score E
Sequences producing significant alignments: (Bits) Value
AT1G42960.1 | Symbols: | expressed protein localized to the in... 1007 0.0
> AT1G42960.1 | Symbols: | expressed protein localized to the
inner membrane of the chloroplast. | chr1:16125782-16127288
FORWARD LENGTH=796
Length=796
Score = 1007 bits (545), Expect = 0.0
Identities = 639/683 (94%), Gaps = 12/683 (2%)
Strand=Plus/Plus
Query 1 TTGCTTAGATATCATCGAACTTGCTCCAACTGctctctcttagga----tct------ca 50
|||||||||||||||||||||||||||||||||||| ||| |||| ||| ||
Sbjct 9 TTGCTTAGATATCATCGAACTTGCTCCAACTGCTCTATCTCAGGATCTCTCTCAGACACA 68
Query 51 gtttcttccatccatggcgtctctttcttctacctctctctctctcCCCAAGAATTCTCA 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 GTTTCTTCCATCCATGGCGTCTCTTTCTTCTACCTCTCTCTCTCTCCCCAAGAATTCTCA 128
Query 111 ACAACTCCATCCTTCATCTGGTGTTTCTCTGAAGCCAAATGCTCGTTGTGCCAGTGTTTC 170
||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||
Sbjct 129 CCAACTCCATCCTTCATCTGGTTTTTCTCTGAATCCAAATGCTCGTTGTGTCAGTGTTTC 188
Query 171 TTTTGGACTGAATCGCTTCAACAAACTGCATATTTCTGCTCCTAGAAACAAAAGGATTCT 230
||||||||||||| || ||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct 189 ATTTGGACTGAATCACTCCAACAAACTTCATATTTCTGCTCCTAGAACCAAAAGGATCCT 248
Query 231 AACCATTCAATCTGCATACAGAGATGATGATGGTTCAGGCAGCACAGGCCTATTTGTTGG 290
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 249 AACCATTCAATCTGCATACAGAGATGATGATGGTTCAGGCAGCACAGGCCTATTCGTCGG 308
Query 291 AGGGTTTATTTTGGGTGGACTTATAGTCGGTGCCCTCGGATGTGTATACGCACCACAGAT 350
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 309 AGGGTTTATTTTGGGCGGACTTATAGTCGGTGCCCTCGGATGTGTATATGCACCACAGAT 368
Query 351 CAGCAAGGCTATAGCTGGAGCAGACCGAAAGGATCTCATGAGGAAATTGCCGAAATTCAT 410
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 369 CAGCAAGGCTATAGCTGGAGCAGACCGAAAGGATCTCATGAGGAAGTTGCCTAAATTCAT 428
Query 411 CTATGACGAGGAAAAAGCTTTGGAGAAAACACGTAAGGTACTAGCTGAGAAAATTGCTCA 470
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 ATATGACGAGGAAAAAGCTTTGGAGAAAACACGTAAGGTACTAGCTGAGAAAATTGCTCA 488
Query 471 GCTCAACTCTGCTATCGACGATGTGTCATCTCAGCTAAAATCAGAAGATACTCCAAATGG 530
||| |||||||||||||||||||| || |||||||| ||||||||||||||||| |||||
Sbjct 489 GCTTAACTCTGCTATCGACGATGTCTCCTCTCAGCTCAAATCAGAAGATACTCCGAATGG 548
Query 531 TGCAGCTCTAAGCACCGATGAAGTCGAGGCTACTGCCTGATATCATCTGTTTT-AGGATC 589
|||||||||||||||||||||| |||||||||| |||||| |||||||||||| |||||
Sbjct 549 TGCAGCTCTAAGCACCGATGAAATCGAGGCTACAGCCTGAAATCATCTGTTTTTAGGATT 608
Query 590 TGAA-TCGAATCACGGGAGATTACTTATTATGATCCCAATAATTGTATTCCTTTCTGTGT 648
|||| | |||||| ||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 609 TGAAATTGAATCATGGGAGATTACTTACTATGATCCCAATAATTGTTTTCCTTTCTGTGT 668
Query 649 AATGTTGTACAACTTTTCGTCTA 671
|||||||||||||||||||||||
Sbjct 669 AATGTTGTACAACTTTTCGTCTA 691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35465307782
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5