BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473747
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
AT1G42970.1 | Symbols: GAPB | glyceraldehyde-3-phosphate dehydr... 2793 0.0
AT1G12900.1 | Symbols: GAPA-2 | glyceraldehyde 3-phosphate dehy... 442 6e-123
> AT1G42970.1 | Symbols: GAPB | glyceraldehyde-3-phosphate dehydrogenase
B subunit | chr1:16127381-16129843 FORWARD LENGTH=1774
Length=1774
Score = 2793 bits (1512), Expect = 0.0
Identities = 1686/1768 (95%), Gaps = 19/1768 (1%)
Strand=Plus/Plus
Query 1 TCCCGATTTGTATCTTACCTACATAATAACCACATATTTCTTTGCTTCACTTTGAACCAT 60
|||| || |||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1 TCCCCATATGTATCTTACCTACATAATAGCCACATATTACTTTGCTTCACTTTGAACCAT 60
Query 61 TGGTTGCTTTTGATCAAAACCAAAGGATGTGTGTATGTATGTATATATTCTAACGCTCAA 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGTTGGTTTTGATCAAAACCAAAGGATGTGTGTATGTATGTATATATTCTAACGCTCAA 120
Query 121 AACTGATCAGTAGCATTCGTAGA---TT-CTTCTTGT-TTCACTTGCAGCTATGGCCACA 175
||||||||| |||||||| |||| || |||||||| |||||||||||||||||||||
Sbjct 121 AACTGATCACTAGCATTCCTAGATTTTTCCTTCTTGTGATCACTTGCAGCTATGGCCACA 180
Query 176 CATGCAGCTCTCGCCGTCTCCAGAATCCCGGTCACACAGAGACTGCAGTCTAAGAGTGCC 235
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 181 CATGCAGCTCTCGCCGTCTCAAGAATCCCGGTCACACAGCGACTGCAGTCTAAGAGTGCC 240
Query 236 ATTCACTCTTTCCCTGCTCAATGCTCCTCCAAGAGGCTAGAAGTTGCTGAATTCTCCGGT 295
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 ATTCACTCTTTCCCTGCTCAATGCTCCTCCAAGAGGCTAGAAGTCGCTGAATTCTCCGGT 300
Query 296 CTGCGTATGAGTAGTAACGGTGGGGAAGCATCTTTCTTCGATGCTGTAGCTGCACAAATC 355
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTGCGTATGAGTAGTATCGGTGGGGAAGCATCTTTCTTCGATGCTGTAGCTGCACAAATC 360
Query 356 ATCCCCAAGGCTGTGACAACATCCACTCCTGTTAGAGGAGAGACAGTGGCCAAACTGAAG 415
||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 361 ATCCCTAAGGCTGTGACAACATCAACTCCTGTTAGAGGAGAGACAGTGGCGAAACTGAAA 420
Query 416 GTTGCGATTAACGGGTTCGGACGGATTGGTAGGAACTTCCTCAGGTGTTGGCATGGTCGT 475
|||||||||||||| || ||| |||||||||||||||| || ||||||||||||||||||
Sbjct 421 GTTGCGATTAACGGTTTTGGAAGGATTGGTAGGAACTTTCTTAGGTGTTGGCATGGTCGT 480
Query 476 AAGGACTCTCCTCTCGAAGTTGTTGTGCTTAATGACAGTGGTGGTGTCAAGAATGCATCC 535
|| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 481 AAAGACTCTCCTCTCGAAGTTGTTGTACTTAACGACAGTGGTGGTGTCAAGAATGCATCC 540
Query 536 CATTTGCTCAAGTATGACTCCATGCTTGGAACCTTCAAGGCTGAAGTGAAAATTGTGGAC 595
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CACTTGCTTAAGTATGACTCCATGCTTGGAACCTTCAAGGCTGAAGTGAAAATTGTGGAC 600
Query 596 AATGAAACTATCAGCGTTGATGGTAAGCTCATCAAAGTTGTCTCCAACAGAGACCCTCTT 655
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATGAAACTATTAGTGTTGATGGTAAGCTCATCAAAGTTGTCTCCAACAGAGACCCTCTT 660
Query 656 AAGCTTCCATGGGCTGAGCTCGGCATTGACATTGTTATCGAGGGAACAGGAGTGTTTGTT 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGCTTCCATGGGCTGAGCTCGGCATTGACATTGTTATCGAGGGAACAGGAGTGTTTGTT 720
Query 716 GATGGGCCAGGAGCAGGGAAGCATATCCAAGCTGGAGCCTCGAAAGTGATCATCACTGCA 775
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 721 GATGGGCCAGGAGCAGGGAAGCATATCCAAGCCGGAGCCTCGAAAGTTATCATCACTGCA 780
Query 776 CCAGCCAAAGGTGCTGATATCCCTACCTATGTTGTGGGCGTCAATGAGCAAGACTATGGT 835
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 781 CCAGCCAAAGGTGCTGATATCCCTACCTATGTTATGGGAGTCAATGAGCAAGACTATGGT 840
Query 836 CACGACGTCGCTAACATCATTAGCAATGCATCTTGCACCACCAATTGTTTGGCACCCTTT 895
||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 841 CACGATGTCGCTAACATTATTAGCAATGCATCTTGCACCACCAACTGTTTGGCACCTTTT 900
Query 896 GCTAAAGTCTTGGATGAAGAATTTGGTATCGTCAAGGGAACAATGACAACCACACACTCT 955
|||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 901 GCTAAAGTCTTGGATGAAGAATTTGGAATTGTCAAGGGGACAATGACAACCACACACTCC 960
Query 956 TACACCGGAGACCAAAGGCTTCTAGATGCATCACACAGGGACCTAAGGCGTGCAAGAGCC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TACACCGGAGACCAAAGGCTTCTAGATGCATCACACAGGGACCTAAGGCGTGCAAGAGCC 1020
Query 1016 GCAGCACTGAACATAGTGCCTACCAGCACAGGTGCAGCCAAGGCGGTCTCATTAGTGTTG 1075
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1021 GCAGCACTGAACATAGTGCCTACCAGCACAGGAGCAGCCAAGGCGGTGTCATTAGTGTTG 1080
Query 1076 CCGCAGCTGAAGGGTAAACTCAACGGGATTGCACTCCGTGTGCCAACACCAAACGTCTCA 1135
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1081 CCGCAGCTGAAGGGTAAACTTAACGGCATTGCACTCCGTGTGCCAACACCAAACGTCTCA 1140
Query 1136 GTGGTTGACCTTGTTATAAACGTTGAGAAGAAAGGTTTGACAGCAGAGGACGTGAACGAG 1195
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1141 GTGGTTGACCTTGTTATAAACGTTGAGAAGAAAGGTTTGACAGCAGAGGATGTGAACGAG 1200
Query 1196 GCCTTCAGAAAAGCCGCTAATGGACCGATGAAAGGCATTTTAGACGTTTGTGACGCCCCT 1255
||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 1201 GCCTTTAGAAAAGCCGCTAATGGACCGATGAAAGGCATTTTAGACGTTTGCGATGCGCCT 1260
Query 1256 CTTGTCTCTGTTGACTTCAGGTGCTCTGATGTCTCTACCACCATTGATTCTTCCCTCACT 1315
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1261 CTTGTCTCTGTTGACTTCAGGTGCTCTGATGTCTCTACCACCATTGACTCGTCCCTCACT 1320
Query 1316 ATGGTTATGGGTGATGATATGGTCAAGGTGGTTGCTTGGTATGATAACGAGTGGGGTTAC 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 ATGGTTATGGGTGATGATATGGTCAAGGTGGTTGCTTGGTATGATAACGAGTGGGGTTAC 1380
Query 1376 AGCCAAAGAGTAGTGGATTTGGCTCACCTAGTGGCTAGCAAGTGGCCGGGAGAGAAAGCT 1435
||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1381 AGCCAAAGAGTGGTGGATTTGGCTCACCTAGTGGCTAGCAAGTGGCCGGGAGCGGAAGCT 1440
Query 1436 GTTGGAAGTGGAGATCCTTTGGAGGATTTCTGCAAGACAAACCCGGCCGATGAGGAATGC 1495
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1441 GTTGGAAGTGGAGATCCTTTGGAGGATTTCTGCAAGACAAACCCGGCTGATGAGGAATGC 1500
Query 1496 AAAGTCTATGAATGAACAACTTTGATCATTTCTTTCTTTATTTTTCACCAAAACAATACT 1555
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 AAAGTCTATGACTGAACAACTTTGATCATTTCTTTCTTTATTTTTCACCAAAACAATACT 1560
Query 1556 TTGTATCATGAGTTA-TTATTCGAAATTGTATTATGCATACCTCTTTGTTTTTCTCATAA 1614
||||||||||||||| ||||||||||| ||| ||||||||| | | |||||||||||||
Sbjct 1561 TTGTATCATGAGTTACTTATTCGAAATCGTACTATGCATAC-T-T--GTTTTTCTCATAA 1616
Query 1615 GATTTTCTTGTCTGATGAGCAACTATATGTTAAGACTGATGAGAAATGTATTTGAGAA-- 1672
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 1617 GATTTTCTTGTCTGATGAACAACTATATGTTAAGACTGA-GAGAATTGTATTTGAGAAAT 1675
Query 1673 --CCATTTTATGCTACATGTTAAAACGGAATTTATTTGAGCAATGTATGACAAAACaaaa 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1676 AACCATTTTATGCTACATGTTAAAACGGAATTTATTTGAGCAATGTATGACAAAAGAAA- 1734
Query 1731 aaaTTGTTTAATTTGGTTTACaaaaaaa 1758
|||||| |||||||||||||| |||
Sbjct 1735 ---TTGTTTGATTTGGTTTACAAATAAA 1759
> AT1G12900.1 | Symbols: GAPA-2 | glyceraldehyde 3-phosphate dehydrogenase
A subunit 2 | chr1:4392450-4394400 REVERSE LENGTH=1501
Length=1501
Score = 442 bits (239), Expect = 6e-123
Identities = 781/1032 (76%), Gaps = 79/1032 (8%)
Strand=Plus/Plus
Query 403 GGCCAA-ACTGAAGGTTGCGATTAACGGGTTCGG-ACGGATTGGTAGGAACTTCCTCAGG 460
|||||| | | ||||| || || || |||||||| | ||||||||||||||||| | |||
Sbjct 303 GGCCAAGA-TAAAGGTAGCCATCAATGGGTTCGGTA-GGATTGGTAGGAACTTCTTGAGG 360
Query 461 TGTTGGCATGGTCGTAAGGACTCTCCTCTCGAAGTTGTTGTGC-TTAATGACAGTGGTGG 519
||||||||||||||||||||||||||||| || || ||||| | |||| |||| ||||||
Sbjct 361 TGTTGGCATGGTCGTAAGGACTCTCCTCTTGATGTCGTTGT-CATTAACGACACTGGTGG 419
Query 520 TG-TCAAGAATGCATCCCATTTGCTCAAGTATGACTCCA-TGCTTGGAACCTTCAAGGCT 577
|| | || || ||||| ||| | ||||| || ||||| | | ||||||| ||| | |||
Sbjct 420 TGTTAAACAA-GCATCACATCTCCTCAAATACGACTCAACT-CTTGGAATCTTTGACGCT 477
Query 578 GAAGTGAAA-ATTGTGGACAATGAAACTATCAGC-GTTGATGGTAAGCTCATCAAAG-TT 634
|| || ||| || ||| | | | || || | |||||||| ||| ||||| ||| ||
Sbjct 478 GATGTCAAACCTTCAGGAGACT-CAGCTCTC-TCTGTTGATGGAAAGATCATC-AAGATT 534
Query 635 GTCTC-CAACAG-AGACCC-TCTTAAGCTTCCATGGGCTGAGCTCGGCATTGACATT-GT 690
|| || | | | | |||| || ||| || || |||| || || ||||||||| || ||
Sbjct 535 GTATCTGATC-GTA-ACCCATC-TAATCTCCCCTGGGGGGAACTAGGCATTGAC-TTAGT 590
Query 691 TATCGAGGGAACAGGAGTGTTTGTTGA-TGGGCCAGGAGCAGGGAAGCATATCCAAGCTG 749
|||||| ||||| |||||||||||||| | | | || || |||||||| | || ||||
Sbjct 591 TATCGAAGGAACCGGAGTGTTTGTTGACAGAGAC-GGTGCTGGGAAGCACCTTCAGGCTG 649
Query 750 GAGCCTCGAAAGTGATCATCACTGCACCAGCCAAAGGTGCTGATATCCCTACCTATGTTG 809
||||| ||| || | ||||||||||| | ||| | | ||| ||||| || ||||| |
Sbjct 650 GAGCCAAGAAGGTTCTTATCACTGCACCTG-GAAAAG-G-TGACATCCCAACTTATGTCG 706
Query 810 TGGGCGTCAATGAGCAAG-ACTATGGT-CA-CGACGTCGCTAAC-ATCATTAGCAATGCA 865
| || |||||| || | ||| | | || | | | | | || ||||| ||||||||
Sbjct 707 TTGGTGTCAAT--GC-TGAACT-T--TACAGCCATGAAGAT-ACGATCATCAGCAATGCG 759
Query 866 TCTTGCACCACCAATTGTTTGGCACCCTTTGCT-AAAG-TCTTGGATGAAG-AATTTGGT 922
||||| || || || ||| | || || || | | || | |||| || || |||||||
Sbjct 760 TCTTGTACTACTAACTGTCTCGCTCCATTCG-TCAAGGTTCTT-GA-CCAGAAATTTGGG 816
Query 923 ATCGTCAAGGGAACAATGACAACCACACACTCTTACACCGGAGACCAAAGGCTT-CTAGA 981
||| | ||||| ||||||||||| || ||||| ||||| || ||||||||| || ||||
Sbjct 817 ATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAAGG-TTGTTAGA 875
Query 982 TGC-ATCACACAGGGACCTAAGGCGTGCAAGAGCCGCAGCACTGAACATAGTGCCTACCA 1040
||| | | ||| | || |||||| | |||||||| ||||| ||||||| || || | ||
Sbjct 876 TGCGAGC-CACCGTGATCTAAGGAGAGCAAGAGCAGCAGCTTTGAACATTGTTCC-AACA 933
Query 1041 GC-ACAGGTGCAGCCAAGGC-G-GTCTCATTAGTG-TTGCCGCAGCTGAAGGGTAAACTC 1096
| ||||| |||||||| || | | ||| || ||| || || | || || || |||||
Sbjct 934 TCTACAGGAGCAGCCAAAGCTGTGGCTC-TT-GTGCTT-CCTAACCTCAAAGGAAAACTT 990
Query 1097 AACGGGATTGCACTCCGTGTGCCAACACCAAACGTCTCAGTGGTTGACCTT-GTTAT-AA 1154
||||| |||||| | ||||||||||| |||||||| ||||||||||| ||| || | |
Sbjct 991 AACGGAATTGCATTGCGTGTGCCAACTCCAAACGTTTCAGTGGTTGA-CTTAGTCGTGCA 1049
Query 1155 ACGT-TGAGAAG-AAAGGTTTGACAGCAGAGGACGTGAACGAGGCCTTCAGAAAAGCCGC 1212
| || | ||| ||| |||| | | | | || || || | || |||||| | || ||
Sbjct 1050 A-GTCT-CCAAGAAAACTTTTG-CTG-A-A-GAAGTCAATGCTGCTTTCAGAGATGCAGC 1103
Query 1213 T-A-ATGGACCGATGAAAGGCAT-TTTAGACGTTTGTGACGCCCCTCTTGTCTCTGTTGA 1269
| | | || | | ||||| || || ||||| ||||| | |||||||||||||||||
Sbjct 1104 TGAGAAAGA--GCTTAAAGGTATCCTT-GACGTCTGTGATGAGCCTCTTGTCTCTGTTGA 1160
Query 1270 CTTCAGGTGCTCTGATGTCTC-TACCACCATTGATTCTTCCCTCACTATGGTTATGGGTG 1328
|||||||||||||||||| || | |||| ||||||||||||||||| ||||||||||| |
Sbjct 1161 CTTCAGGTGCTCTGATGTATCCT-CCACTATTGATTCTTCCCTCACAATGGTTATGGGAG 1219
Query 1329 ATGATATGGTCAAGGTGGTTGCTTGGTATGATAACGAGTGGGGTTACAGC-CAAAGAGTA 1387
|||||||||| || ||| ||||||||||||| || || ||||||||| | || |||||
Sbjct 1220 ATGATATGGTTAAAGTGATTGCTTGGTATGACAATGAATGGGGTTACT-CACAGAGAGTC 1278
Query 1388 GTGGATTTGGCT 1399
|| |||||||||
Sbjct 1279 GTTGATTTGGCT 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86947343940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5