BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473749
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT1G42990.1 | Symbols: ATBZIP60, BZIP60 | basic region/leucine ... 1544 0.0
> AT1G42990.1 | Symbols: ATBZIP60, BZIP60 | basic region/leucine
zipper motif 60 | chr1:16135852-16137463 REVERSE LENGTH=1102
Length=1102
Score = 1544 bits (836), Expect = 0.0
Identities = 1034/1125 (92%), Gaps = 32/1125 (3%)
Strand=Plus/Plus
Query 1 GACCATGGCGGAGGAATTTGGAAGCTTTGATTTACTCGTAGGTGATGATGATTTGTTCTT 60
||||||||||||||||||||||||| | ||||||||| || ||||| ||||| |||||
Sbjct 1 GACCATGGCGGAGGAATTTGGAAGCATAGATTTACTC---GGAGATGAAGATTTCTTCTT 57
Query 61 CGATTTCGATCCTTCAATAGTCATTGATTCTCCTCCGGCGGAGGATTTTCTCCAGTCTTC 120
|||||||||||||||||| || |||||||||| |||||||||||||||||| ||| ||
Sbjct 58 CGATTTCGATCCTTCAATCGTAATTGATTCTCTTCCGGCGGAGGATTTTCTTCAG---TC 114
Query 121 TTCACCGGATTCATGGATCGGAGAAATCGAGAATCAATTGATGAACGATGAGAATC-TTG 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 115 TTCACCGGATTCATGGATCGGAGAAATCGAGAATCAATTGATGAACGATGAGAATCATCA 174
Query 180 AGAAGGAGAGTTTTCTGGAGTTGGATCAACAATCGGTTTCAGATTTCATTGCCGATTTAC 239
|| ||||||||||| |||| |||||||| |||||||||||||||||||| || ||| |||
Sbjct 175 AG-AGGAGAGTTTTGTGGAATTGGATCAGCAATCGGTTTCAGATTTCATAGCGGATCTAC 233
Query 240 TCGTTGATTATCCAACAAGCGATTCTGGCTCCGTTGATTTGGCGGCTGATAAAGTTTCCG 299
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
Sbjct 234 TCGTTGATTATCCAACTAGCGATTCTGGCTCCGTTGATTTGGCGGCTGATAAAG-TT-C- 290
Query 300 ATGTTATCACCGTCGATTCTCCCGTCGCCGCTGATGATTCCGGGAAGGAGAATTCGGATT 359
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 291 ----TA--ACCGTCGATTCTCCCGCCGCCGCTGATGATTCCGGGAAGGAGAATTCGGATT 344
Query 360 TGGTTGTTGAGAAGAAGTCTAATGATTCTGGGAGTGAGATTCA-G--GATGATGATGATG 416
||||||||||||||||||||||||||||||| || |||||||| | |||||||| || |
Sbjct 345 TGGTTGTTGAGAAGAAGTCTAATGATTCTGGTAGCGAGATTCATGATGATGATGACGAAG 404
Query 417 AAGGAGACGATGATGCTGTGGCTAAGAAACGAAGAAGGAGAGTAAGAAATAGAGATGCGG 476
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 405 AAGGAGACGATGATGCTGTGGCTAAAAAACGAAGAAGGAGAGTAAGAAATAGAGATGCGG 464
Query 477 CGGTTCGATCCAGAGAGAGGAAGAAGGAATATGTGCAAGATTTAGAGAAGAAGAGTAAGT 536
||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 465 CGGTTAGATCGAGAGAGAGGAAGAAGGAATATGTACAAGATTTAGAGAAGAAGAGTAAGT 524
Query 537 ATCTCGAAAGAGAATGCTTGAGACTAGGACGTATGCTTGAGTGCTTCGTTGCCGAAAACC 596
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 525 ATCTCGAAAGAGAATGCTTGAGACTAGGACGTATGCTTGAGTGCTTCGTTGCTGAAAACC 584
Query 597 AGTCTCTACGTTACTGTTTGCAAAAGGGTAGTGGTAATAATACTTCCATGATGTCGAAGC 656
|||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||
Sbjct 585 AGTCTCTACGTTACTGTTTGCAAAAGGGTAATGGCAATAATACTACCATGATGTCGAAGC 644
Query 657 AGGAGTCTGCTGTGCTCTTGTTGGAATCCCTGCTGTTGGGTTCCCTGCTTTGGCTTCTGG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 AGGAGTCTGCTGTGCTCTTGTTGGAATCCCTGCTGTTGGGTTCCCTGCTTTGGCTTCTGG 704
Query 717 GAGTAAACTTCATTTGCCTATTCCCTTATCTGTCCCACACAAAGTGTTACCTCCTCCTGT 776
||||||||||||||||||||||||||||| |||||||||||||||||| |||||| | ||
Sbjct 705 GAGTAAACTTCATTTGCCTATTCCCTTATATGTCCCACACAAAGTGTTGCCTCCTAC-GT 763
Query 777 C-AGAACCAGAAAAGCTGGTTCTAAACGGGCTCGGGAGTAGTAGCAAACCATCTAATACC 835
| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 764 CCAGAACCAGAAAAGCTGGTTCTAAACGGGCTCGGGAGTAGTAGCAAACCGTCTTATACC 823
Query 836 GACGTGAGTCGGAGATGTAAGGGTTCAAGGCCTAGGATGAAACACCAAATCTTAACCCTT 895
| ||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 824 GGCGTTAGTCGGAGATGTAAGGGTTCGAGGCCTAGGATGAAATACCAAATCTTAACCCTT 883
Query 896 GTGGTGTGACAACGCCTTTTT-AACTGCTTCCTTTGCGCATTC-GAGTCGTAGATGAGTG 953
| || |||||||||||||||| ||||||||| |||||||||| |||| |||||||||||
Sbjct 884 GCGGCGTGACAACGCCTTTTTTAACTGCTTCTTTTGCGCATTTTGAGTTGTAGATGAGTG 943
Query 954 TCGTCCTTAGTAGTCTCTCT-T-GTTTTTGTATTTTCGCTGTTGAAAATTTTCTGTCTAA 1011
|| | ||||| ||||||| | ||||| |||||| ||||||||||| ||||||||||||
Sbjct 944 TCTT--TTAGTTTTCTCTCTCTTGTTTT-GTATTT-CGCTGTTGAAAGTTTTCTGTCTAA 999
Query 1012 TATGGATAAGTAAACGGTGAATGTGAGTCTTATGGTCCTGGATGATATCTATCTAATAAT 1071
||| ||||||| ||| ||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1000 TATCGATAAGTTAACAGTGAATGTGGGTCTTATGGTTATGGATGATATCTATCTAATAAT 1059
Query 1072 GTTTCTCTACCTTTAAAATTTTGATTTTGAGGCATAACGTCAGGT 1116
| |||| |||||||||| |||||||||||||||||| ||||||
Sbjct 1060 GCTTCTG--CCTTTAAAATGTTGATTTTGAGGCATAACTTCAGGT 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5