BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473756
Length=985
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43130.1 | Symbols: LCV2 | like COV 2 | chr1:16228208-162312... 1526 0.0
> AT1G43130.1 | Symbols: LCV2 | like COV 2 | chr1:16228208-16231233
REVERSE LENGTH=1314
Length=1314
Score = 1526 bits (826), Expect = 0.0
Identities = 896/929 (96%), Gaps = 8/929 (1%)
Strand=Plus/Plus
Query 1 GGTCAAACAAAATCGGAGATCTGGTCCGACTAAACCAGAC---TAACCAATTTCAACCTC 57
|||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 3 GGTCAAACAAAATCAGAGATCTGGTCTGACTAAACCAGACGAAGAACCAATTTCAACCTC 62
Query 58 CTCGCCGG-AGAAAATGGCGGAA-GACAAAGAAGCTACGACGAGTTCGCTGAGTCAAGGA 115
|||||||| | |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 63 CTCGCCGGCA-AAAATGGCGGAAGGA-AAAGAAGCTACGACGAGTTCGCTGAGTCAAGGA 120
Query 116 CTCACTCCTCACCAAGACCCCGACGATGCTCCCAAGTCTCCTCCCAACTCTCCAAATTCT 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCACTCCTCACCAAGACCCCGACGATGCTCCCAAGTCTCCTCCCAACTCTCCAAATTCT 180
Query 176 TCTACTCGCAAGGCTTGTTATGGGGTTCTACAGAGTTGGGTGTCTAAGAAGTTTATGACT 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTACTCGCAAGGCTTGTTATGGGGTTCTACAGAGTTGGGTGTCTAAGAAGTTTATGACT 240
Query 236 GGATTTGTTGTACTCTTTCCTGTTGCTGTTACATTCCTCATCACTTGGTGGTTTATCCAG 295
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 GGATTTGTCGTACTCTTTCCTGTAGCTGTTACATTCCTCATCACTTGGTGGTTTATCCAG 300
Query 296 TTCGTTGATGGGTTCTTCAGTCCGATATACGAGAATCTTGGTGTTGACATATTTGGACTT 355
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 TTCGTTGATGGTTTCTTCAGTCCGATATACGAGAACCTTGGTGTTGACATATTTGGACTT 360
Query 356 GGGTTCATTACATCTGTACTTTTCACTTTCTTTGTTGGAATATTTGCTTCGTCGTGGCTG 415
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 361 GGGTTCATTACATCTGTACTTTTCACTTTCTTTGTCGGAATATTTGCTTCGTCGTGGTTG 420
Query 416 GGTTCTACGGTTTTCTGGCTTGGGGAGCAGTTTATAAGGCGAATGCCCTTTGTGAAGCAC 475
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 GGTTCTACAGTTTTCTGGCTTGGGGAGCAGTTTATAAGGCGAATGCCCTTTGTCAAGCAC 480
Query 476 ATATATTCAGCTTCTAAACAAATTAGCACTGCTATTTCTCCGGACCAAAACACTACTGCC 535
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 ATATATTCAGCTTCTAAGCAAATTAGCACTGCTATTTCTCCAGACCAAAACACTACTGCC 540
Query 536 TTTAAAGAGGTAGCAATTATTCGTCACCCTCGTATTGGTGAATACGCATTTGGATTTATC 595
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTTAAAGAGGTAGCAATCATCCGTCACCCTCGTATTGGTGAATACGCATTTGGATTTATT 600
Query 596 ACATCATCGGTGACACTTCAGACTGACCATGGAGAAGAAGAGTTATGTAGTGTGTATGTG 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACATCATCGGTGACACTTCAGACTGACCATGGAGAAGAAGAGTTATGTAGTGTGTATGTA 660
Query 656 CCAACGAATCATCTGTACATAGGAGATGTGTTTCTGGTGAGTAGCGAAGAAATCATAAGG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCAACGAATCATCTGTACATAGGAGATGTGTTTCTGGTGAGTAGCGAAGAAATCATAAGG 720
Query 716 CCAAATTTATCGATCCGAGAAGGAATAGAGATCATAGTATCGGTGGGGATGACAATGCCG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCAAATTTATCGATCCGAGAAGGAATAGAGATCATAGTATCGGTGGGGATGACAATGCCG 780
Query 776 CAAGTGATATCTCATGCGGACAGGACAACAAATATAACTCCTCACCAACACAGTCTCAGG 835
||||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 781 CAAGTTATATCTCATGTGGACAGGACAACAAACAGAACTCCTCACCAACACAGTCTCAGG 840
Query 836 GTTCCTCTCAACAGACTTTAGTTAATAGCAGTATGGCCTCTCTACCTTGTAAAGATAGTT 895
||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||
Sbjct 841 GTTCCTCTCAACAGACTTTAGTTAATAGCTGTATGGCCTCTATACCGTGTAAAGATAGTT 900
Query 896 TACGCGTTGTGCTCAATCGTGAATT-TTT 923
||||||| ||||||||||||||||| |||
Sbjct 901 TACGCGTCGTGCTCAATCGTGAATTATTT 929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48224781120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5