BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473757
Length=1447
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43170.1 | Symbols: ARP1, emb2207, RPL3A, RP1 | ribosomal pr... 2298 0.0
> AT1G43170.1 | Symbols: ARP1, emb2207, RPL3A, RP1 | ribosomal
protein 1 | chr1:16266720-16268870 FORWARD LENGTH=1496
Length=1496
Score = 2298 bits (1244), Expect = 0.0
Identities = 1385/1453 (95%), Gaps = 10/1453 (1%)
Strand=Plus/Plus
Query 1 AAACTAGGGTTTTAAAGATCATTTCTCTCTTGCAGTCC-CATCGTTGGAGCTTAGAAGCC 59
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 AAACTAGGGTTTTAAAGCTCATTTCTCTCTTGCAGTCCTCATCGTTGGAGCTTAGAAGCC 60
Query 60 GTCGGCACAAGTAGAAGAAGAAGAAGAATGTCTCACAGGAAGTTTGAGCACCCAAGACAT 119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCGGCACAAGAAGAAGAAGAAGAAGAATGTCTCACAGGAAGTTTGAGCACCCAAGACAT 120
Query 120 GGTTCTCTTGGTTTCCTTCCAAGGAAGAGAGCTAACCGTCACAGAGGAAAGGTGAAGGCT 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTTCTCTTGGTTTCCTTCCAAGGAAGAGAGCTAACCGTCACAGAGGAAAGGTGAAGGCG 180
Query 180 TTCCCTAAGGATGACCAAACCAAGCCTTGCAAGTTCACAGCTTTCATGGGTTACAAAGCT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCCCTAAGGATGACCAAACCAAGCCTTGCAAGTTCACAGCTTTCATGGGTTACAAAGCT 240
Query 240 GGTATGACTCACATTGTCAGAGAAGTCGAGAAACCTGGATCTAAGCTTCACAAGAAGGAG 299
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 241 GGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAAGCTTCACAAGAAGGAG 300
Query 300 ACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTTGTTGTTGGAGTTGTTGCC 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 ACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCC 360
Query 360 TATGTGAAGACTCCGAGAGGTTTGAGGTCTTTGAACACTGTTTGGGCACAGCATTTGAGT 419
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 TATGTGAAGACTCCTAGAGGTTTGAGGTCTTTGAACACTGTCTGGGCACAGCATTTGAGT 420
Query 420 GAGGAGGTTAGGAGAAGGTTCTACAAGAACTGGGCTAAGTCTAAGAAGAAGGCTTTCACT 479
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGGAGGTCAGGAGAAGGTTCTACAAGAACTGGGCTAAGTCTAAGAAGAAGGCTTTCACT 480
Query 480 GGGTACGCTAAGCAGTATGAAAGTGAGGAGGGCAAGAAGGGTATTCAGGCTCAGCTTGAG 539
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 481 GGGTACGCTAAGCAGTATGACAGTGAGGATGGCAAGAAGGGTATTCAGGCTCAGCTTGAG 540
Query 540 AAGATGAAGAAATACGCAACTGTTATCCGTGTTTTGGCCCACACTCAGATCAGGAAGATG 599
||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 541 AAGATGAAGAAGTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAGATCAGGAAGATG 600
Query 600 AAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATCCAGATCAATGGTGGTACCATT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATCCAGATCAATGGTGGTACCATT 660
Query 660 GCCCAGAAGGTCGACTTTGCCTACAGCTTCTTTGAGAAGCAGATCCCAATTGAAGCTGTC 719
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 GCCCAGAAGGTTGACTTTGCCTACAGTTTCTTTGAGAAGCAGATCCCAATTGAAGCTGTC 720
Query 720 TTCCAGAAGGATGAAATGATTGATATCATTGGTGTGACCAAGGGTAAGGGTTACGAAGGT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 TTCCAGAAGGATGAAATGATTGATATCATTGGTGTGACCAAGGGTAAGGGTTATGAAGGT 780
Query 780 GTTGTTACCCGTTGGGGTGTTACCCGTCTTCCTCGTAAGACTCACAGGGGTCTGCGTAAG 839
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 GTTGTTACTCGTTGGGGTGTTACCCGTCTTCCTCGTAAGACTCACAGAGGTCTGCGTAAG 840
Query 840 GTTGCTTGTATCGGTGCGTGGCATCCTGCTAGAGTGTCTTACACTGTTGCTAGGGCTGGT 899
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 841 GTTGCTTGTATTGGTGCGTGGCATCCTGCTAGAGTGTCCTACACTGTTGCTAGGGCTGGT 900
Query 900 CAGAATGGTTACCATCACCGTACTGAGCTGAACAAGAAGATTTACAGGTTGGGCAAGGTT 959
||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 901 CAGAACGGTTACCATCACCGTACTGAGCTTAACAAGAAGATTTACAGGTTGGGTAAGGTT 960
Query 960 GGTACTGAGGCACATTCAGCCATGACTGAATATGACAGGACTGAGAAGGATGTGACTCCA 1019
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGTACTGAGGCACACACAGCCATGACTGAATATGACAGGACTGAGAAGGATGTGACTCCA 1020
Query 1020 ATGGGAGGATTCCCACACTACGGTGTGGTGAAGGATGATTACTTGATGATTAAGGGGTGC 1079
|||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||
Sbjct 1021 ATGGGAGGCTTCCCACACTACGGTATTGTGAAGGATGACTACTTGATGATTAAGGGGTGC 1080
Query 1080 TGTGTTGGTCCCAAGAAGAGAGTTGTAACTCTCAGACAGTCACTACTCACCCAGACTTCC 1139
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1081 TGTGTTGGTCCCAAGAAGAGAGTTGTAACTCTCAGACAGTCACTTCTCACTCAGACTTCC 1140
Query 1140 CGTCTTGCCTTGGAGGAGATCAAACTCAAGTTCATTGACACCGCCTCCAATGGGGGACAT 1199
|||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 1141 CGTCTTGCCTTGGAGGAGATCAAACTCAAGTTTATTGACACCGCCTCCATTTTTGGACAT 1200
Query 1200 GGTCGCTTCCAGACCACCCTGGAGAAGATGAGGTTTTACGGTCGTACCAAGAATTAAGAG 1259
||||||||||||||| |||| |||||||||||||||||| ||| || ||| ||||||
Sbjct 1201 GGTCGCTTCCAGACCTCCCTTGAGAAGATGAGGTTTTACAACCGTGTCACGAAGTAAGAG 1260
Query 1260 TTGTTTTATCGCAATTCTTCTTAGAAAGTTTTATGTTTTGGTTATCTGTTGCTACTTGTC 1319
|||||||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||
Sbjct 1261 TTGTTTTATCACAATTCTTCTTAGAAAGTTTCATGTTT-GGTTATCTGTTGCTACTTATC 1319
Query 1320 TCAGAGAGATGTTATCCTTAAAACAATGCTATGCAGTTTTCTTTTG-TTTTAGTTTGTTA 1378
||||||| |||||||||| |||||||| |||| |||||||||||| |||||||||||||
Sbjct 1320 TCAGAGA--TGTTATCCTTTAAACAATGTTATGGAGTTTTCTTTTGCTTTTAGTTTGTTA 1377
Query 1379 CATTTTTGGAAGACAAAT-GATTTGCTTCTCAAGTTTTGTGACTTTTGATGTGTT-T--A 1434
| |||||||||| ||| |||||||||||||||||||| |||||| |||||||| | |
Sbjct 1378 CTTTTTTGGAAGTTAAAACGATTTGCTTCTCAAGTTTTGAGACTTT-GATGTGTTCTTTA 1436
Query 1435 TCATTTATGAAAA 1447
|||||||||||||
Sbjct 1437 TCATTTATGAAAA 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71334974445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5