BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473764
Length=1412
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43580.1 | Symbols: | Sphingomyelin synthetase family prote... 2041 0.0
> AT1G43580.1 | Symbols: | Sphingomyelin synthetase family protein
| chr1:16410532-16412728 REVERSE LENGTH=1523
Length=1523
Score = 2041 bits (1105), Expect = 0.0
Identities = 1300/1391 (93%), Gaps = 25/1391 (2%)
Strand=Plus/Plus
Query 1 AATTTCCGCATTTGTTGCAAATTTCAGACaaaaaaaaaaGC-TTTCCTT-T--TTATCAG 56
|||||||||| |||||||||||||||||| |||| | ||| || | || ||||
Sbjct 4 AATTTCCGCAATTGTTGCAAATTTCAGAC--AAAACTTTCCTTTTTTTTGTCCTTTTCAG 61
Query 57 TCTTTG-TCCGTCTTCTACCTCCACCATCAAATCC-G-G-----T-GA-C--C-GATGAC 103
|| ||| ||||||||| ||| ||||| |||||||| | | | | | | ||||||
Sbjct 62 TCATTGTTCCGTCTTCGACCACCACCGTCAAATCCGGCGACCCATCAACCTTCAGATGAC 121
Query 104 TAGAGGTGGACTTGGGATCGCTGCGCTGTCATACGTGGCAATCGATTACATGCGTTACGT 163
|| |||||||||||| || || ||| |||||||||||| |||||||||||||||||||||
Sbjct 122 TAAAGGTGGACTTGGAATAGCCGCGATGTCATACGTGGTAATCGATTACATGCGTTACGT 181
Query 164 GTCACCAGTGTGGCATTCTCGTCTTATGCCAGTTCTTTGGTCGGTTCTTGCTATCGCCGT 223
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 182 GTCACCGGTGTGGCATTCTCGTCTTATGCCAGTTCTTTGGTCTGTTCTTGCTATCGCCGT 241
Query 224 GGTCACTCGTGTTCTGTTCTATAAACACTGGTCTAAAGAGCTACGAGCAGCTATTCCTTT 283
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CGTCACTCGTGTTCTGTTCTATAAACACTGGTCTAAAGAGCTACGAGCAGCTATTCCTTT 301
Query 284 TCTTGGTTCTGTCGTATT-CTTGCTCTGTGCTCTTCTCTTTGAAGCTCTTTGTGTTCGCT 342
||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 302 CCTTGGTTCTATCGTATTCCTT-CTCTGTGCTCTTCTCTTTGAAGCTCTTTGTGTTCGCT 360
Query 343 CTGTTACTGCTGTTCTTGGCTTAGATTGGCACCGGGAAACGCCTCCACTTCCTGATACAG 402
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 CTGTTACTGCTGTTCTTGGCTTAGATTGGCACCGGGAAACACCTCCACTTCCTGATACAG 420
Query 403 GCCAATGGTTCTTACTTGCACTAAACGAGAGCCTTCCCGGGACTA-TTGTGGAAATCTTG 461
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 421 GCCAATGGTTCTTACTTGCACTAAACGAGAGCCTTCCCGGGAC-ACTTGTGGAAATCCTA 479
Query 462 AGAGCTCATATCATTGGATTGCATCATTTTCTTATGCTGTTTATAATGTTGGGTTTCTCG 521
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 AGAGCACATATCATTGGATTGCATCATTTTCTTATGTTGTTTATAATGTTGGGTTTCTCG 539
Query 522 GTAGCATTCGACTCAGTGAAAGCTCCAGGTTTAGGATTAGGCGCGAGATACATATTCACG 581
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTGGTGTTCGACTCAGTGAAAGCTCCAGGTTTAGGATTAGGCGCGAGATACATATTCACG 599
Query 582 ATGGGAGTTGGACGTCTTTTAAGAGCTATTACCTTTGTATCTACTATATTACCTTCAGCT 641
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 600 ATGGGAGTTGGACGTCTTTTAAGAGCTATAACCTTTGTATCAACTATATTACCTTCAGCT 659
Query 642 AGACCTTGGTGTGCTTCAGCCCGGTTCAACAGTGTACCTTCTCATCCTCATCGTTGGGCT 701
|||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||
Sbjct 660 AGACCTTGGTGTGCTTCAGCCCGGTTTAACAATGTACCTTCTCAGCCTCATCGTTGGGCT 719
Query 702 CAGAAATATTATGTCCCCTATGCTAATGACCCTGCTGCTATAAGACAGCTCCTTCATTGG 761
||||||||||||||||| ||||||||||| |||||||| || ||| ||||||||||||||
Sbjct 720 CAGAAATATTATGTCCCTTATGCTAATGATCCTGCTGCAATTAGAAAGCTCCTTCATTGG 779
Query 762 GATGCAGCTTACGCTGATCCAGGAAGATACATTGGTGACTATAGAGCTGATTGGGGTTCA 821
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 780 GATGCAGCTTATGCTGATCCAGGAAGTTACATTGGTGACTATAGAGCTGATTGGGGTTCA 839
Query 822 ATGAGCTTCCTTAGTGAGTTCTTGAGACCGAGTTACTCTGAAGGGTCTTCTTGGTTTGCT 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ATGAGCTTCCTTAGTGAGTTCTTGAGACCGAGTTACTCTGAAGGGTCTTCTTGGTTTGCT 899
Query 882 CTGCTAAAGAAAGCTGGAGGTGGTTGTAATGATCTCATGTACAGTGGTCATATGCTTGTA 941
|| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 900 CTATTAAAGAAAGCCGGAGGTGGTTGTAATGATCTCATGTATAGTGGTCATATGCTTGTA 959
Query 942 GCTGTCCTAACCGCAATGGCTTGGACGGAGGCTTATGGAGGTTTCTCTTCTGCAATGATA 1001
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GCTGTCTTAACCGCTATGGCTTGGACGGAGGCTTATGGAGGTTTCTCTTCTGCAATGATA 1019
Query 1002 TGGTTGTTCGTGGCACACAGCGCACAGAGAGAAATACGAGAGCGCCACCATTACACGGTA 1061
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1020 TGGTTGTTCGTGGCACACAGCGCACAGAGAGAAATACGAGAGCGACACCATTACACAGTA 1079
Query 1062 GACTGCATTGTGGCGATTTATGTTGGTATCCTTCTCTGGAAAATGACAGGTTTCATTTGG 1121
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1080 GACTGTATTGTGGCGATATATGTTGGTATCCTTCTCTGGAAAATGACGGGTTTTATCTGG 1139
Query 1122 TCAGCCGAGAGAAAAACAAAGCAGACGAAACTAGAGAAGATTCAGAACAGTCTGATTCAC 1181
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1140 TCAGCCGAGAGAAAAACGAAGCAGACGAAACTAGAGAAGATTCAGAATAGTCTGATTCAC 1199
Query 1182 GCTGCAAAGGATGGGGACATGGAGACTGTAAGGAGACTTGTGGAGGAGATAGAGGTAAGC 1241
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GCTGCAAAGGATGGAGACATAGAGACTGTAAGGAGACTTGTGGAGGAGATAGAGGTAAGC 1259
Query 1242 TCCT-GGGTGGAGAAGCAGAGTAATGTCATCTCGAACCGAACAATGACTGTGTTTGCGTG 1300
|| | ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1260 TC-TAGGGTGGAGAAGCAGAGTAAAGTCATCTCGAACCGGACAATGACTGTGTTTGCGTG 1318
Query 1301 TGCCACAGTGATCACAACACTTACTATAGTGATTCTGGCGTTGACTTTGACAAGCGACGG 1360
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1319 TGCCACAGTGATCACAACACTCACTATAGTGATTCTGGCATTGACTTTGACAAGCGACGG 1378
Query 1361 CTAAAAGAGAC 1371
|||||||||||
Sbjct 1379 CTAAAAGAGAC 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69577955370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5