BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473765
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43610.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 776 0.0
AT1G43600.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 774 0.0
> AT1G43610.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr1:16424578-16425345 FORWARD
LENGTH=768
Length=768
Score = 776 bits (420), Expect = 0.0
Identities = 549/610 (90%), Gaps = 13/610 (2%)
Strand=Plus/Plus
Query 3 GAAGAAGAAGCTTCACCTAGTCCTTGACTTGGACCACACGCTAATCCACACGGTTCTTGT 62
|||||||||||||||| ||||||||||||| |||||||||||| ||||| | ||||| ||
Sbjct 147 GAAGAAGAAGCTTCACTTAGTCCTTGACTTAGACCACACGCTACTCCACTCTGTTCTGGT 206
Query 63 TTCGGACCTTTCTGAACGCGAGAAGTATCTACTGGAAGAAGCTGATTCAAGGCAAGATCT 122
||| ||||| || ||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 207 TTCAGACCTATCCAAACGCGAGAAGTATCTACTCGAAGAAACTGATTCAAGGCAAGATCT 266
Query 123 ATGGAGATTCAACAAAGACAGTCCCTACGAATTTATCATAAAGCTACGACCTTTTGTTCA 182
||||||| |||| |||| || |||||||||||||||||||||||||||||| ||||
Sbjct 267 ATGGAGACGCAACGTAGACGGT---TACGAATTTATCATAAAGCTACGACCTTTTCTTCA 323
Query 183 TGAATTTCTCTTAGAAGCTAACAAGCTATTCACAATGCACGTTTACACAATGGGTAATTC 242
||| |||||||||||||| || ||||| |||||||||||||||||||||||||||| ||
Sbjct 324 TGAGTTTCTCTTAGAAGCCAATAAGCTCTTCACAATGCACGTTTACACAATGGGTAGTT- 382
Query 243 CT-GTTACGCTCAGGATGTGTTGAAGTTGATTGATCCGGATAAAGTATACTTT-GGAAAT 300
|| ||||||| || | ||||||||| |||||||||| ||||||||||||||| |||||
Sbjct 383 CTAGTTACGCAAAGCAGGTGTTGAAGCTGATTGATCCTGATAAAGTATACTTTGGGAAA- 441
Query 301 CGAGTTATAACCAGAGAAGCAAGTCCTTGTAATAAGACACTTGATCTTCTTGTGGCTGAT 360
||||||||||| |||||||||||||||| ||||||| ||||||||||||||| |||||||
Sbjct 442 CGAGTTATAACTAGAGAAGCAAGTCCTTTTAATAAGTCACTTGATCTTCTTGCGGCTGAT 501
Query 361 ACACGTAGAGTGGTAATTGTGGATGATACGATTTC-TGTTTGGCCTCATCACAAGAGAAA 419
| |||||||||||| ||||||||||||||| ||| |||||||||| ||||||||||||
Sbjct 502 AAACGTAGAGTGGTCATTGTGGATGATACG-GTTCATGTTTGGCCTTTTCACAAGAGAAA 560
Query 420 CTTGTTGCAGATCACCAAATACATCTATTTTAGAGTCGATGGTACCAAGTGGGATTCGTA 479
|||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 561 CTTGTTGCAGATCACCAAATACATTTATTTTAAAGTCGATGGAACCAAGTGGGATTCGTA 620
Query 480 CGCAGAAG-AGAAGAAAGACGAGAGTCGAAAG-AGTGGATCATTGGCGAATGTTCTGAAG 537
|||||||| | |||||||| ||||||| |||| | |||||||||||| |||||||||||
Sbjct 621 CGCAGAAGCA-AAGAAAGATGAGAGTC-AAAGCAATGGATCATTGGCCAATGTTCTGAAA 678
Query 538 TTCCTTGAAGATGTTCACAAAAGATTTGAAGAGGATTTAGATTCTAAAGATTTGAGGCTA 597
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 679 TTCCTTGAAGTTGTTCACAAAAGATTTGAAGAGGATTTAGGTTTTAAAGATTTGAGGCTA 738
Query 598 TTGATACCTT 607
||||||||||
Sbjct 739 TTGATACCTT 748
> AT1G43600.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr1:16415357-16416022 FORWARD
LENGTH=666
Length=666
Score = 774 bits (419), Expect = 0.0
Identities = 567/636 (89%), Gaps = 19/636 (3%)
Strand=Plus/Plus
Query 3 GAAGAAGAAGCTTCACCTAGTCCTTGACTTGGACCACACGCTAATCCACACGGTTCTTGT 62
||||||||||||||| |||||||||||||||||||||||||| ||||| | ||||| ||
Sbjct 45 GAAGAAGAAGCTTCATTTAGTCCTTGACTTGGACCACACGCTACTCCACTCTGTTCTGGT 104
Query 63 TTCGGACCTTTCTGAACGCGAGAAGTATCTACTGGAAGAAGCTGATTCAAGGCAAGATCT 122
||| ||||| ||| ||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 105 TTCAGACCTATCTAAACGCGAGAAGTATCTACTCGAAGAAACTGATTCAAGGCAAGATCT 164
Query 123 ATGGAGATTCAACAAAGACAGTCCCTACGAATTTATCATAAAGCTACGACCTTTTGTTCA 182
||||||| |||| |||| || ||||| |||||||||||||||||||||||| ||||
Sbjct 165 ATGGAGACGCAACGTAGACGGT---TACGAGTTTATCATAAAGCTACGACCTTTTCTTCA 221
Query 183 TGAATTTCTCTTAGAAGCTAACAAGCTATTCACAATGCACGTTTACACAATGGGTAATTC 242
||| |||||||||||||| || ||||| |||||||||||||||||||||||||||| ||
Sbjct 222 TGAGTTTCTCTTAGAAGCCAATAAGCTCTTCACAATGCACGTTTACACAATGGGTAGTT- 280
Query 243 CT-GTTACGCTCAGGATGTGTTGAAGTTGATTGATCCGGATAAAGTATACTTT-GGAAAT 300
|| ||||||| || | ||||||||| |||||||||| ||||||||||||||| |||||
Sbjct 281 CTAGTTACGCAAAGCAGGTGTTGAAGCTGATTGATCCTGATAAAGTATACTTTGGGAAA- 339
Query 301 CGAGTTATAACCAGAGAAGCAAGTCCTTGTAATAAGACACTTGATCTTCTTGTGGCTGAT 360
||||||||||| |||||||||||||||| ||||||| ||||||||||||||| |||||||
Sbjct 340 CGAGTTATAACTAGAGAAGCAAGTCCTTTTAATAAGTCACTTGATCTTCTTGCGGCTGAT 399
Query 361 ACACGTAGAGTGGTAATTGTGGATGATACGATTTC-TGTTTGGCCTCATCACAAGAGAAA 419
| |||||||||||| ||||||||||||||| ||| |||||||||| ||| ||||||||
Sbjct 400 AAACGTAGAGTGGTGATTGTGGATGATACG-GTTCATGTTTGGCCTTTTCATAAGAGAAA 458
Query 420 CTTGTTGCAGATCACCAAATACATCTATTTTAGAGTCGATGGTACCAAGTGGGATTCGTA 479
|||||||||||||||||||||| | ||||||| ||||||||| |||||||||||||||||
Sbjct 459 CTTGTTGCAGATCACCAAATACGTTTATTTTAAAGTCGATGGAACCAAGTGGGATTCGTA 518
Query 480 CGCAGAAG-AGAAGAAAGACGAGAGTCGAAAG-AGTGGATCATTGGCGAATGTTCTGAAG 537
|||||||| | |||||||| ||||||| |||| | |||||||||||| |||||||||||
Sbjct 519 CGCAGAAGCA-AAGAAAGATGAGAGTC-AAAGCAATGGATCATTGGCTAATGTTCTGAAA 576
Query 538 TTCCTTGAAGATGTTCACAAAAGATTTGAAGAGGATTTAGATTCTAAAGATTTGAGGCTA 597
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 577 TTCCTTGAAGATGTTCACAAAAGATTTGAAGAGGATTTAGGTTTTAAAGATTTGAGGCTA 636
Query 598 TTGATACCTTATCCTTGTAGACAATGCTGCTTCTGA 633
|||||||||| ||||||||||||||| ||||
Sbjct 637 TTGATACCTT------GTAGACAATGCTGCTACTGA 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5