BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473769
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43630.1 | Symbols: | Protein of unknown function (DUF793) ... 1666 0.0
> AT1G43630.1 | Symbols: | Protein of unknown function (DUF793)
| chr1:16436371-16437755 REVERSE LENGTH=1385
Length=1385
Score = 1666 bits (902), Expect = 0.0
Identities = 1116/1218 (92%), Gaps = 19/1218 (2%)
Strand=Plus/Plus
Query 103 TATTTCAAAGATGCCAGAGACAGAGTATTCGTTTGGAAGGTCATTACTGAGTTTGCGTCG 162
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||| ||
Sbjct 150 TATTTCAAAGATGCCAGAGACAGAATATTCGTTTGGAAGGTCATTCCTTAGTTTGCGCCG 209
Query 163 GGACCAAGCACACTTAATGGAT-CAATC-TGCCTTCCCCGAGCCTATGAGCATGGAGGTA 220
||||||||||||||||||||| ||| | | ||||| | |||||||||| ||||||||||
Sbjct 210 AGACCAAGCACACTTAATGGATCCAA-CAT-CCTTCTCTGAGCCTATGACCATGGAGGTA 267
Query 221 GAGTTAGATTCTTTTCAAAGACAAGTTGCGGAAAAATTCATCGATCTTAATGCTTCCGCG 280
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 268 GAGTTAGATTCTTTTCAAAGACAAGTTGCGGAAAAATTCATCGATCTTAATGCCTCCGCG 327
Query 281 GCTGATGATGAGATCCTATCACTTGAATGGATAGGGAAACTTCTTGATTCTTTTCTTTGT 340
| ||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 GATGAGGCTGAGATCCTCTCACTTGAATGGATAGGGAAACTTCTTGATTCTTTTCTTTGT 387
Query 341 TGCCAAGAAGATTTCCGAGTTATAATATTCAACCATAAGTCTCAGCTCCTTAAACAACCA 400
||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||
Sbjct 388 TGCCAAGAAGATTTCCGAGTTATAATATTCAACCACAAACCTCAGCTCCTCAAACAACCA 447
Query 401 ATGGACCGATTGATAGAAGACTACTTCGAAAGGAGTGTTAAAGCTCTTGATGTATGTAAT 460
|||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||| |||
Sbjct 448 ATGGACCGCTTGATAGAAGAATACTTCGAGAGGAGTGTAAAAGCTCTTGATGTATGCAAT 507
Query 461 GCGATCCGTGATGGCATCGAGCAAATCCGACAATGGCAAAAACTGATTGAAATTGTTATA 520
||||| |||||||||||||||||||||||||| ||||| ||||| |||||||| || |||
Sbjct 508 GCGATACGTGATGGCATCGAGCAAATCCGACAGTGGCAGAAACTAATTGAAATCGTAATA 567
Query 521 TCCGCTTTGGACACGAGTCGAAAACAACAACTTGGAGAAGGAGAAATCCACCGTGCAAAG 580
|| ||||||||||||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct 568 TCGGCTTTGGACACGA-AC-CAAA-GACAACTTGGAGAAGGAGAAATCCACCGTGCAAAG 624
Query 581 AAAGCTTTAATTGATTTGGCGATTGGAATGCTAGACGAGAAAGAGTCTTCAAACACATTG 640
|||||||| ||||||||||| ||||||||||| ||||||||||| ||||| |||||
Sbjct 625 AAAGCTTTGATTGATTTGGCAATTGGAATGCTCGACGAGAAAGACTCTTCTAACAC---- 680
Query 641 GCACACCGTAATCGCTCTTTCGCACGCAACAAAGACCATAATCAACACATTGGCTACATT 700
| |||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct 681 -C-CACCGTAATCGCTCTTTCACACGCAACAAGGACCATAATCAACACATTGGCTATATC 738
Query 701 AGGTCACTTTCTTGGAGCGTTTCCCGGTCATGGTCAGCCGCTAGGCAGTTACAAGGCATT 760
||||||||||||||||| ||||| ||||| ||||| || | ||||||||||||||||||
Sbjct 739 AGGTCACTTTCTTGGAGTGTTTCTCGGTCGTGGTCGGCATCAAGGCAGTTACAAGGCATT 798
Query 761 GGAAATAACTTAGCAACGCCTCGAGCAAGCGATGTCATGGCTACTAATGGCCTAGCCCTC 820
||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||| |||
Sbjct 799 GGAAATAACTTAGCAACCCCTCGAGCCAGCGATGTTATGGCGACTAATGGCCTAGCTCTC 858
Query 821 ACTGTCTATACGATGACATCAATATTATTGTTTGTAACATGGGTTCTTGTCGCAGCAATA 880
|| || ||||| |||||||||||| | ||||||||||| ||||||||||||||||| |||
Sbjct 859 ACAGTGTATACAATGACATCAATACTGTTGTTTGTAACTTGGGTTCTTGTCGCAGCCATA 918
Query 881 CCTTGTCAAGACCGTGGTTTACATGTCCATTTCTATTTCCCTAGGCATTTCCAATGGGCA 940
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 CCTTGTCAAGATCGTGGTTTACATGTCCATTTCTATTTCCCTAGGCATTTCCAATGGGCA 978
Query 941 GTACCAGTCATGTCCTTGCACGATAAGATCATGGAGGAATCaaagaaaagagacaaaaag 1000
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 979 GTACCAGTCATGTCCTTGCACGATAAGATTATGGACGAATCAAAGAAAAGAGACAAAAAG 1038
Query 1001 aaaaagGGTTGTGGACTACTTAGAGAGATTAATCAAATCGAGAGAAGCTCGAGAATGTTA 1060
|| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1039 AAGAAGGGTTGTGGACTACTTAGGGAGATTAATCAAATCGAGAGAAACTCGAGAATGTTA 1098
Query 1061 AGTGATTTGATCGATTCGGACAGCTTCTCATTAACAGATGAGAA--G-AGTTTAGAGGTG 1117
||||||||||| |||||||||| ||||||||||||||||| || | | ||||||||||
Sbjct 1099 AGTGATTTGATTGATTCGGACAATTTCTCATTAACAGATGAAAAATGTACTTTAGAGGTG 1158
Query 1118 AAGGAGAGAGTTCAAGAATTGATGAATGTGTGTGAAGCTATGAAAG-ATGGTTTGGATCC 1176
||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |||||
Sbjct 1159 AAGGAGAGAGTTCAAGAATTGATGAATGTGTGTGAAGCTAT-AAAGGAGGGTTTAGATCC 1217
Query 1177 ATTTGATAGGAAAGTGAGGAATGTCTTTCACCAAATTGTTCGTACTCGCACTGAGGCTCT 1236
||||||||||||||||||| ||||||| ||||||||||||||||||||||| || |||||
Sbjct 1218 ATTTGATAGGAAAGTGAGGGATGTCTTCCACCAAATTGTTCGTACTCGCACCGAAGCTCT 1277
Query 1237 TGATTCACTTGGAAAGCTTCGAAATCAAGAATAGGACATTTTGCGATATGTTTTCATCTT 1296
|||||||||||||||||||| ||||||||||||| |||||||| ||||||| || || ||
Sbjct 1278 TGATTCACTTGGAAAGCTTCAAAATCAAGAATAGAACATTTTGAGATATGTGTTAATATT 1337
Query 1297 TTGTGGAGTTTTGTTTTA 1314
| ||||||||||||||||
Sbjct 1338 T-GTGGAGTTTTGTTTTA 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64658301960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5