BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473770
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43640.1 | Symbols: AtTLP5, TLP5 | tubby like protein 5 | ch... 1327 0.0
> AT1G43640.1 | Symbols: AtTLP5, TLP5 | tubby like protein 5 |
chr1:16439435-16441844 REVERSE LENGTH=1594
Length=1594
Score = 1327 bits (718), Expect = 0.0
Identities = 946/1050 (90%), Gaps = 39/1050 (4%)
Strand=Plus/Plus
Query 1 Tgagaaaaaacagcaaagataatcagagagagc----agaa-aaaaagaa-aacagagaT 54
||||||||||||||||||| ||||||||||| | | || ||||| || |||||||||
Sbjct 1 TGAGAAAAAACAGCAAAGAAAATCAGAGAGATCAAAAAAAAGAAAAAAAAGAACAGAGAT 60
Query 55 TCTTTTAAACTAACGAAGACATAGCGTTTTTCTGAAGCAGAAGCTTTGGTATTCGGAAAA 114
|||||| |||||||||||||||| ||||| ||| ||| |||| |||||||||||||||||
Sbjct 61 TCTTTTGAACTAACGAAGACATATCGTTTCTCTAAAGTAGAATCTTTGGTATTCGGAAAA 120
Query 115 ATGTCGTTTGGT-AGTATTGTTCGTGATGTTAGAGATAGTATAGGAAGCTTTTCGAGACG 173
||||||||| | ||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 121 ATGTCGTTT-CTGAGTATTGTTCGTGATGTTAGAGATACTGTAGGAAGCTTTTCGAGACG 179
Query 174 TAGTTTCGAAGTGAGAGTGTCTAAT-GG--GACTCATCAGAGGAGTAAATCTCACGGTGC 230
||||||||| |||||||| |||||| || ||||||||||||||||||||||||| | |
Sbjct 180 TAGTTTCGACGTGAGAGTATCTAATGGGACGACTCATCAGAGGAGTAAATCTCAC-G-G- 236
Query 231 ATCTGTTGAGACACATATTGAAGATCTTGTTGTAATCAAGAACACTCGTTGGGCTAATTT 290
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 237 ---TGTTGAGGCACATATTGAAGATCTTATTGTAATCAAGAACACTCGTTGGGCTAATTT 293
Query 291 ACCGGCTGCGCTGTTACGAGATGTGATGAAAAAGTTGGATGATAGCAAGAGCACTTGGCC 350
|||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct 294 ACCGGCTGCGCTATTACGAGATGTGATGAAAAAGTTGGATGAAAGCGAGAGTACTTGGCC 353
Query 351 TGCTCGTAAACAAGTTGTTGCTTGTGCTGGTGTTTGCAAGACATGGAGACTAATGTGCAA 410
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 354 TGCACGTAAACAAGTCGTTGCTTGTGCTGGTGTCTGCAAGACATGGAGACTAATGTGCAA 413
Query 411 AGATATTGTGAAAAGTCCTGAGTTCTCAGGAAAACTCACATTTCCAGTTTCATTGAAACA 470
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 414 AGATATTGTGAAAAGTCCTGAGTTCTCAGGCAAACTCACATTTCCAGTTTCGTTGAAACA 473
Query 471 GCCCGGGCCTAGGGACGGAACCATACAATGTTTTATCAAAAGGGACAAGTCTAATATGAC 530
||||||||||||||| |||| ||||||||||| ||||||||| ||||||||||| |||||
Sbjct 474 GCCCGGGCCTAGGGATGGAATCATACAATGTTATATCAAAAGAGACAAGTCTAACATGAC 533
Query 531 TTACCATCTTTACCTTTCTCTTAGTCCTGT-ACTAACCT-TTGTCA-----AA-TTTGTA 582
|||||| |||||||||||||||||||||| | || | | ||| | || ||| |
Sbjct 534 TTACCACCTTTACCTTTCTCTTAGTCCTGCCA-TA-CTTGTTGAAAGTGGGAAGTTTCTT 591
Query 583 C-------A--GC-CTTACTTA-A-CTACATACACAGAGTATGTGATATCAATGGATGCA 630
| | || || || | | ||||||||||||||||||| |||||||||||||||
Sbjct 592 CTCTCGGCAAAGCGCTCACGGAGAGCTACATACACAGAGTATGTAATATCAATGGATGCA 651
Query 631 GACAACATATCAAGATCAAGCAGCACATACATTGGCAAACTGAGGTCTAACTTTCTAGGG 690
|||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 652 GACAACATTTCAAGATCAAGCAGCACTTACATTGGCAAACTGAAGTCTAACTTTCTAGGG 711
Query 691 ACAAAATTTATAGTATATGATACGGCTCCTGCATACAACAGTAGCCAGATATTGTCCCCA 750
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 712 ACAAAATTTATAGTATATGATACGGCTCCTGCGTACAACAGTAGCCAGATATTGTCCCCA 771
Query 751 CCAAACCGAAGTCGTAGGTTCAACTCCGAGAAAGTCTCTCCCAAGGTCCCCTCTGGAAGT 810
|||||||| |||||||| ||||||||| ||||||| |||||||| ||||| |||||||||
Sbjct 772 CCAAACCGGAGTCGTAGTTTCAACTCCAAGAAAGTGTCTCCCAAAGTCCCTTCTGGAAGT 831
Query 811 TACAACATCGCTCAAGTTACATACGAGCTTAACGTGTTTGGAACCCGTAGACCTCGCAGG 870
|||||||| |||||||||||||||||||| ||| || ||||||||||| ||||||| ||
Sbjct 832 TACAACATTGCTCAAGTTACATACGAGCTGAACTTGCTTGGAACCCGTGGACCTCGTAGA 891
Query 871 ATGCACTGCACTATGCACTCTATCCCTTCCTTAGCTCTAGAACCCGGCGGTACTGTCCCT 930
||| |||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 892 ATGAACTGCATTATGCACTCTATCCCCTCCTTAGCTCTAGAACCCGGAGGTACTGTCCCT 951
Query 931 GGCCAACCTGAGTTTCTACAACGTTCCCTTGATGAATCTTTCCGCAGCATCGGTTCCTCA 990
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 AGCCAACCTGAGTTTCTACAACGTTCCCTTGATGAATCTTTCCGCAGCATCGGTTCCTCA 1011
Query 991 AAGATAGTCGACCACTCGGGAGATTTCACC 1020
||||||||| ||||||||||||||||||||
Sbjct 1012 AAGATAGTCAACCACTCGGGAGATTTCACC 1041
Score = 422 bits (228), Expect = 6e-117
Identities = 346/400 (87%), Gaps = 20/400 (5%)
Strand=Plus/Plus
Query 1067 AAGGAAAGGAACGACCTTTGGTACTGAAAAATAAGCCGCCGAGGTGGCACCAAAAGTTGC 1126
||||||||| ||||||||||||||||||| ||| ||||| ||||||| |||| |||||
Sbjct 1058 AAGGAAAGGTGCGACCTTTGGTACTGAAAACTAAACCGCCAAGGTGGCTCCAACCGTTGC 1117
Query 1127 AATGCTGGTGCCTTAACTTCAGAGGGAGAGTGACAGTAGCTTCAGTAAAAAACTTCCAGT 1186
||| |||||||||||||||| |||||||||||| |||||||| || || ||||||||||
Sbjct 1118 GATGTTGGTGCCTTAACTTCAAAGGGAGAGTGACTGTAGCTTCTGTCAAGAACTTCCAGT 1177
Query 1187 TGGTATCCGCTGCAACGGTTCAGCCC----------G-G-TGCTGGAGCATT-G--ACCA 1231
|| | ||||||||||||||||||||| | | || ||||||||| | || |
Sbjct 1178 TGATGTCCGCTGCAACGGTTCAGCCCGGTAGTGGTAGTGATGGTGGAGCATTGGCTACGA 1237
Query 1232 ---CATCGGTATCATCACAGAAGCCAGGGCAAACAGACCATGATGAGATAATACTACAGT 1288
||||| ||||| ||||| |||||| |||| || |||||||| ||||||||||||| |
Sbjct 1238 GGCCATCGTTATCACCACAGCAGCCAGAGCAATCAAACCATGATAAGATAATACTACACT 1297
Query 1289 TTGGGAAAGTGGGTAAGGATATGTTCACTATGGACTATCGTTATCCTCTCTCTGCCTTTC 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 TTGGGAAAGTGGGTAAGGATATGTTCACTATGGACTATCGTTATCCTCTCTCTGCCTTTC 1357
Query 1349 AAGCATTTGCCATTTGCTTGAGCAGCTTTGATACTAAATTGGCATGTGAATAAAAGTAGA 1408
|||| |||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1358 AAGCGTTTGCCATTTCCCTGAGCACCTTTGATACTAAATTGGCATGTGAATAAAAGTAGA 1417
Query 1409 AAGATCATAAGATGGAGTTCAAA-TGAATAGGAACCGTTT 1447
|||||||||||| ||| || ||| | ||||||||||||||
Sbjct 1418 AAGATCATAAGAGGGACTTAAAACT-AATAGGAACCGTTT 1456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73895202240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5