BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473774
Length=2254
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43690.1 | Symbols: | ubiquitin interaction motif-containin... 3397 0.0
> AT1G43690.1 | Symbols: | ubiquitin interaction motif-containing
protein | chr1:16478247-16482837 FORWARD LENGTH=2320
Length=2320
Score = 3397 bits (1839), Expect = 0.0
Identities = 2101/2222 (95%), Gaps = 39/2222 (2%)
Strand=Plus/Plus
Query 52 TTATCAGAG-AAAAGATTCGAATTGAGTTTCTTCATGATTTGGGCAAAGCTAATCTGATC 110
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 107 TTATCAGAGAAAAAGATTCGAATTGAGTGTCTTCATGATTTGGGCAAAGCTAATCTGATC 166
Query 111 TTGCGGAGACAACAACAAAAATT-TGTGTTTTTTATTACCAAATCGTAACGG-AAGTGTT 168
||||||||||||||||||||||| | |||||||| ||||||| ||||||||| |||||||
Sbjct 167 TTGCGGAGACAACAACAAAAATTGTCTGTTTTTT-TTACCAATTCGTAACGGAAAGTGTT 225
Query 169 CAAAGTTACGATCTTTGGA---TCCGGGC-AAATCTCTATCTTTTCAATGGCGGATCATC 224
||||||| | ||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct 226 CAAAGTTCCAATCTTTGGATCCTCCGAGCAAAATCTCTATCTTTTCAATGGCGGATCATC 285
Query 225 AAGAAGACGAAGATTTGAAATTGGCTC-TACAGATGAGTATGCAATACAATCCTCCTGAG 283
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 286 AAGAAGACGAAGATTTGAAATTGGCTCTTA-AGATGAGTATGCAATACAATCCTCCTGAG 344
Query 284 CCAAAACGGAGCAAACCCATT---GAAGAAGAAACTGGATCCGGATCTCAATCTGGTGGT 340
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 345 CCAAAACGGAGCAAACCCATTGAAGAAGAAGAAACTGGATCCGGATCTCAATCTGGTGGT 404
Query 341 GAATCACCGGAGGCGAAATCTCGGCGGTTGCAGCGAGAGCTTATGGCTGCTGCTGCTGAG 400
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 405 GAATCACCGGAGGCGAAATCTCGTCGGTTGCAGAGAGAGCTTATGGCTGCTGCTGCTGAG 464
Query 401 AAACGTATGGTTCTGTTTCCTAAGAGTCCTTCTCCTGTGAACAAAGATAGGGTTTTGCCA 460
|| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 465 AAGCGTATGGTTTTGTTTCCTAAGAGTCCTTCTCCTGTTAACAAAGCTAGGGTTTTGCCA 524
Query 461 ATTAG-G--GTTGGTGGTGATAAGGATGATGAAGTTGTGAAGAGTGTGGGATC-TGATTT 516
||||| | |||||||||||||| | |||| | | |||| ||||||||| || |||
Sbjct 525 ATTAGTGTTGTTGGTGGTGATAA-G--GATG-A---G-GAAG-TTGTGGGATCTTG-TTT 574
Query 517 GGGGAAGGAGTTATC-GATGGAAGAGTCTGATCAGTTGTTTTCAATGGTGTTTGGGAATG 575
|||||||||||| || | ||||||||||||||||||||||||| || |||||||||||||
Sbjct 575 GGGGAAGGAGTTGTCTG-TGGAAGAGTCTGATCAGTTGTTTTCGATTGTGTTTGGGAATG 633
Query 576 AGGTTTCGAAAAGTGTACTTGCTCAATGGACTAATCAGGGCATAAGGTTTAGCCCTGATC 635
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 634 AGGTTTCGAAAAGTGTTCTTGCTCAATGGACTAATCAAGGCATAAGATTTAGCCCTGATC 693
Query 636 CTGAAACTACTATAGGATTAGTGCAGCATGAAGGTGGGCCCTGCGGTGTTTTAGCAGCAC 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 CTGAAACTACTATAGGATTAGTGCAGCATGAAGGTGGGCCCTGCGGTGTTTTAGCAGCAC 753
Query 696 TACAAGCATTTGTTCTTAAATACCTTCTTTACTTTCCGGGTGACAGAGTAGCTTCCCCAA 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TACAAGCATTTGTTCTTAAATACCTTCTTTACTTTCCGGGTGACAGAGTAGCTTCCCCCT 813
Query 756 GTATGGGTGTCTGGACATTATCTAAAGATCGTCATGTTGTATCTGATTCCTTCTCTTCTG 815
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 814 GTATGGGTGTCTGGACATTATCTAAAGATCGTCATGTTGTGTCTGACTCCTTCTCTTCTG 873
Query 816 TAACCGAAGAAGCAAAAACAAGGGCCCTTGTTAGAAGCATGTGTGAGATTCTATTTATGT 875
|||| |||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||
Sbjct 874 TAACTGAAGAAGCAAAAACAAAGGCCCTTGTCAGAAGTATGTGTGAGATTCTATTTATGT 933
Query 876 GTGGAAACAACAACCGCGCTGTAATAGCAAGTTTCACTAATTTTGAGGATTCCAGTACTA 935
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 934 GTGGAGACAACAACCGCGCTGTAATAGCAAGTTTCACTAATTTTGAGGATTCCAGTAGTA 993
Query 936 ATCAGAAAGATGAGGCAATGGCTAGTGGGCTCCCCATTGAATCTGCTTCAGATTTGCAGA 995
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 994 ATCAAAAAGATGAGGCAATGGCTGGTGGGCTCCCCATTGAATCTGCTTCAGATTTGCAGA 1053
Query 996 AGATCTTAAGGTTTGAGACATTCACTACTCAAGCCAGTGCCCTTAATAAGCTAGAAGGCA 1055
||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1054 AGATCTTAAGGTTCGAGACATTCACAACTCAAGCCAGTGCCCAAAATAAGCTAGAAGGCA 1113
Query 1056 CAATAACTGCTTTCCAAAGTCGCATGGGTGCTTTGCTGTTCCTAATTTCTGCTTTACTCT 1115
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 CAATAACTGCTTTTCAAAGTCGCATGGGTGCTTTGCTGTTCCTAATTTCTGCTTTACTCT 1173
Query 1116 CCCGTGGACTGGATTCCGTTCAAGCCGACAGGGATGATCCAAACCTCCCCCTAGTCACTG 1175
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1174 CCCGAGGACTGGATTCAGTTCAAGCCGACAGGGATGATCCAAACCTCCCCCTAGTAACTG 1233
Query 1176 CACCATTTGGACATGCCTCCCAGGAAATTGTAAACCTACTGTTGTGTGGAGAAGCGGTTC 1235
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1234 CACCATTTGGACATGCCTCCCAGGAAATTGTAAACCTGCTGCTGTGTGGAGAAGCGGTTC 1293
Query 1236 CTAATGTGTTTGATGGAAGGATGGATCTTGGAGGCGGCATGTTTCTTAAAGGCATATCTA 1295
||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1294 CTAATGTATTTGATGGACGGATGGATCTTGGAGGCGGCATGTTTCTGAAAGGCATATCTA 1353
Query 1296 AGAATGTGGATGTGGGCTTCCTCACGTTGCTCGAGTCTCTCAATTTCTGCAAAGTCGGTC 1355
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1354 AGAATGTAGATGTGGGCTTCCTCACGTTGCTCGAGTCTCTCAACTTCTGCAAAGTCGGTC 1413
Query 1356 AGAATCTCAAGTGTCCCAAATGGCCAATATGGGTTATTGGCAGCGAGTCTCATTACACCG 1415
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1414 AGAATCTCAAATGTCCCAAATGGCCAATATGGGTTATTGGCAGTGAGTCTCATTACACCG 1473
Query 1416 TCCTGTTTGCACTCGACCCATCCGTCCAAGAAGAAAACGTACTTGAGCTGAGAGAGTCTC 1475
|| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1474 TCTTGTTTGCACTTGACCCATCCGTCCAAGAAGAAAACGAACTTGAGCTGAGAGAGTCTC 1533
Query 1476 AGATAAGAAGAGCTTTCGATGCAAGAGACGAAAGCGGAGGAGGAGGCTTCATCAGC-GTG 1534
||||||||||||||||||||||||||||| |||||||||||||||| ||||| | | |||
Sbjct 1534 AGATAAGAAGAGCTTTCGATGCAAGAGACCAAAGCGGAGGAGGAGGTTTCATAA-CTGTG 1592
Query 1535 GAGGCCTTTCACCAAGTTGTTCAGGAAACAAACATCAGACTCCCAA-CAGAGAAGCTCAA 1593
||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |
Sbjct 1593 GAGGCCTTTCACCAAGTTGCTCAGGAAACAAACATCAGACTCCCAATCA-AGAAGCTCGA 1651
Query 1594 CGATATCTGCGCCACGGGTTTCATCGTGTGGAGCGAGTTATGGCAAGTGATCTTGGAGCT 1653
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1652 CGACATCTGCGCCACGGGTTTCATCGTGTGGAGCGAGTTATGGCAAGTTATCTTGGAACT 1711
Query 1654 AGACCGAAATTTGGGAGGGATAAAGGATTCAACAGGAATGATGGGAAAGAAAGTGTTTGA 1713
||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 1712 AGACCAAAATTTGGGAGGGATAAAAGATGCAACAGGACTGATGGGAAAGAAAGTGTTTGA 1771
Query 1714 TATTTATCACTTCAACGGGATTGCCAAATCCGATATAAACGGTGGTGGTCAATCAATGGC 1773
||| |||||||||||||| |||||||| |||||||||||||||||||||||| |||||||
Sbjct 1772 TATCTATCACTTCAACGGAATTGCCAAGTCCGATATAAACGGTGGTGGTCAAGCAATGGC 1831
Query 1774 TGTGGAAGGTGGGACGGTTCCTATGCAGAGGCCAAGGCTGACAAAACTAAACGTAGCTGT 1833
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct 1832 TGTGGAAGGTGGGATGGTTCCTATGCAAAGGCCAAGGCTGACAAAACTAAACGTATCGGT 1891
Query 1834 TCCTCCAAAATGGACACCAGAAGAGTACATGTCATGTGCACTGCCGCCGAGCAGCTCTGA 1893
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1892 TCCTCCAAAATGGACACCAGAAGAGTACATGACATGTGCACTGCCGCCGAGCAGCTCTGA 1951
Query 1894 GAAAGACTCAGAAGTGAATCAGCCTAAACCGGTACAGCATGCACCATTGGTGGATTGTAT 1953
|||||||||||||||||||||||| |||||||| || ||||||||| |||||||||||||
Sbjct 1952 GAAAGACTCAGAAGTGAATCAGCCAAAACCGGTCCAACATGCACCACTGGTGGATTGTAT 2011
Query 1954 CAGAACTCGGTGGTCGCGTGCCGCTTGTAGCTGGTCTGGAGATCCTCCAAGTATAGTCTG 2013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2012 CAGAACTCGGTGGTCGCGTGCCGCTTGTAGCTGGTCTGGAGATCCTCCAAGTATAGTCTG 2071
Query 2014 AAGAATGTTGTATTATGAGAAAGCTTGAGCGTT-ATTCTGGCTCGTTGGATTCTAAAGCa 2072
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
Sbjct 2072 AAGAATGTTGTATTATGAGAAAGCTTGAGCGTTTATTCTGGCTCATTGGATTCTAAAG-A 2130
Query 2073 aaaaaaaCGGGAAACTGCTGATTTGATTTGGCGGTTTAGACGCGCGTCTGAACTTTCTTT 2132
|| ||||||| ||||||||||| ||||||||||||| | || ||||||||||||||||||
Sbjct 2131 AAGAAAACGG-AAACTGCTGATCTGATTTGGCGGTT-A-ACACGCGTCTGAACTTTCTTT 2187
Query 2133 GCGTTGTCCGttttttttCATGTTGTGTATTGATGTAGAATTTTTGTTATCTATTATTGA 2192
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2188 GCGTTGTCCGTTTTTTT-CATGTTGTGTATTGATGTAGAATTTTTGTTATCTATTATTGA 2246
Query 2193 ACATTATTGAGACAAATGAATATTTTAATTGTTGGATATAATTGCTTTCAATAACATTGA 2252
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 2247 ACATTATTGAGACAAATGAATATTTCAATTGTTGGATAAAATTGCTTTCAATAACATTGA 2306
Query 2253 TC 2254
||
Sbjct 2307 TC 2308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111846814260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5