BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473775
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43700.1 | Symbols: VIP1, SUE3 | VIRE2-interacting protein 1... 1844 0.0
> AT1G43700.1 | Symbols: VIP1, SUE3 | VIRE2-interacting protein
1 | chr1:16484231-16486241 FORWARD LENGTH=1371
Length=1371
Score = 1844 bits (998), Expect = 0.0
Identities = 1190/1276 (93%), Gaps = 40/1276 (3%)
Strand=Plus/Plus
Query 1 CCTACTTAGTACTTACCTG-CCCTCTCGACAAAATTTCTTCTGTACTTTCACATTTCTGT 59
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 8 CCTACTTAGTACTTACCTGCCCCTCTCGACAAAATTTCTTTTGTACTTTCACATTTCTCT 67
Query 60 GAAAT-CTCTCGGTAGGTTTGTGAAAACCTCGCCGCCGGGaaaaaaaaaaaTCAATGGAA 118
| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 68 GTAATAAACTCGGTAGGTTTGCGAAAACCTCGCCGCCGGGAAAAAAAAAAATCAATGGAA 127
Query 119 GGAGGA-G--GAGGACCAAATCAAACGATTCTCAGTGAAATAGAACATATGCCTGAAGCT 175
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 GGAGGAGGAAGAGGACCAAATCAAACGATTCTCAGTGAAATAGAACATATGCCTGAAGCT 187
Query 176 CCACGTCAACGTATCTCTCATCACCGTCGAGCTCGCTCTGAAACCTTCTTCTCCGGCGAA 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 CCACGTCAACGTATCTCTCATCACCGTCGAGCTCGCTCTGAAACCTTCTTCTCCGGCGAA 247
Query 236 TCAATCGACGATCTCCTCTTATTCGATCCTTCTGATATCGATTTCTCTTCCCTAGACTTC 295
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 248 TCAATCGACGATCTCCTCTTATTCGATCCTTCCGATATCGATTTCTCTTCTCTAGACTTC 307
Query 296 CTCAATGCT---CCACCA-C-C-AC-A--ACAACAACAACCACAAGCTTCTCCGATGTCC 346
||||| ||| |||||| | | || | |||||||||||| ||||||||||| ||||||
Sbjct 308 CTCAACGCTCCACCACCACCACAACAATCACAACAACAACCGCAAGCTTCTCCCATGTCC 367
Query 347 GTTGATTCACCTTCTGAAGAAACTTCATCCAACGGTGTTGTTCCTCCTAACCCTCTTCCT 406
|||| | ||| |||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 368 GTTG----A--TTCGGAAGAAACCTCATCGAACGGTGTTGTTCCTCCTAATTCTCTTCCT 421
Query 407 CCGAAACCCGAAGCTCGATTCGGTCGCCATGTTCGTAGCTTCTCGGTTGATTCAGATTTC 466
|| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 422 CCAAAACCCGAAGCTAGATTCGGTCGCCATGTTCGTAGCTTCTCGGTTGATTCCGATTTC 481
Query 467 TTCGATGATTTAGGAGTTACTGAGGAACAATATGTTGGGAAATCTTTAGCTACGAGTTCA 526
||||||||||| || |||||||||| | | | | | | | ||||||| ||||||
Sbjct 482 TTCGATGATTTGGGTGTTACTGAGG-A-GA-A-G-T------T-TATAGCTACAAGTTCA 529
Query 527 GGAGAGAAGAAGAAAAGGAATCATCATCATAACAGGAGTAATTCTATGGATGGAGAGATG 586
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 530 GGAGAGAAGAAGAAAGGGAATCATCATCATAGCAGGAGTAATTCTATGGATGGAGAGATG 589
Query 587 AGTTCGGCGTCGTTTAATATCGAATCGATTTTAGCTTCTGTTAGTGGTAAAGATAGTGGG 646
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 590 AGTTCGGCGTCGTTTAATATCGAATCGATTTTAGCTTCTGTGAGTGGTAAAGATAGTGGG 649
Query 647 AAGAAGAATATGGGTATGGGTGGTGATAGACTTGCTGAGCTTGCTTTGCTTGATCCTAAA 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 AAGAAGAATATGGGTATGGGTGGTGATAGACTTGCTGAGCTTGCTTTGCTTGATCCTAAA 709
Query 707 AGAGCTAAAAGGATTTTAGCGAATAGACAATCTGCGGCGAGGTCGAAAGAGAGGAAGATT 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 AGAGCTAAAAGGATTTTAGCGAATAGACAATCTGCGGCGAGGTCGAAAGAGAGGAAGATT 769
Query 767 AGGTATACTGGTGAGTTGGAGAGGAAGGTTCAGACACTTCAGAATGAAGCAACTACATTG 826
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 770 AGGTATACTGGTGAGTTAGAGAGGAAGGTTCAGACACTTCAGAATGAAGCTACTACATTG 829
Query 827 TCTGCTCAAGTCACTATGTTGCAGAGAGGAACGTCAGAGCTGAACACTGAAAATAAACAC 886
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 830 TCTGCTCAAGTCACTATGTTACAGAGAGGAACATCAGAGCTGAACACTGAAAATAAACAC 889
Query 887 CTCAAAATGCGGCTTCAAGCTTTAGAGCAACAAGCTGAACTTAGGGATGCTTTGAATGAA 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 CTCAAAATGCGGCTTCAAGCTTTAGAGCAACAAGCTGAACTTAGGGATGCTTTGAATGAA 949
Query 947 GCGCTGCGGGATGAACTGAACCGCCTTAAGATGGCAGCTGGAGAAATTCCTCAGGGGAAT 1006
||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||
Sbjct 950 GCGCTGCGGGATGAACTGAACCGACTTAAGGTGGTAGCTGGAGAAATTCCTCAGGGGAAT 1009
Query 1007 GGAAATTCATACAACCGTGCTCAATTCTCATCTCAGCAATCGGCAATGAATCAGTTTGGG 1066
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GGAAATTCTTACAACCGTGCTCAATTCTCATCTCAGCAATCGGCAATGAATCAGTTTGGG 1069
Query 1067 AACAACAA-GAACCAGCAGATGAGCACAAACGGGCAGCCATCACACCCAAGCTTCATGGA 1125
||||| || |||||| |||||||| ||||||||||||||||| | |||||||| ||||||
Sbjct 1070 AACAA-AACGAACCAACAGATGAGTACAAACGGGCAGCCATCGCTCCCAAGCTACATGGA 1128
Query 1126 TTTCACCAAGAGAGGCTGAGTTCGTGGCACCTCTAAATGTTGGCTGAGTTATCAATACGT 1185
|||||||||||||||||||||||||| ||||| || ||||| |||||||||| |||||||
Sbjct 1129 TTTCACCAAGAGAGGCTGAGTTCGTGTCACCTATATATGTTTGCTGAGTTATAAATACGT 1188
Query 1186 TATATTCATTTCGGGCTGCA-TATTTGATGTATGTAA---GTATGTATGTATGCATGTAT 1241
|||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||
Sbjct 1189 TATATTCATTTCGGGCTGCAATATTTGATGTATGTAAAAAGTATGTATGTATCCATGTAT 1248
Query 1242 TAATG-CTTTTGTGTT 1256
|||| ||||||||||
Sbjct 1249 -AATGGCTTTTGTGTT 1263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63202486155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5