BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473781
Length=489
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43790.1 | Symbols: TED6 | tracheary element differentiation... 776 0.0
> AT1G43790.1 | Symbols: TED6 | tracheary element differentiation-related
6 | chr1:16575895-16576417 FORWARD LENGTH=523
Length=523
Score = 776 bits (420), Expect = 0.0
Identities = 472/495 (95%), Gaps = 11/495 (2%)
Strand=Plus/Plus
Query 1 CCACCTCAAGAAATAAATCATC--AGCCTCACACTTCATACACAA-TCAATGGCCTCCAC 57
|||||||||||||||||||||| |||||||||| ||| |||||| | ||||||||||||
Sbjct 10 CCACCTCAAGAAATAAATCATCAGAGCCTCACACATCAAACACAAGT-AATGGCCTCCAC 68
Query 58 GGATTCATCAGTTTACCGTCCCACACCAACTCCAGACCATGACACTACTGTTGTAGTAGT 117
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 GGA-T--TCAGTTTACCGTCCCACACCAACTCCAGACCATGACACTACTGTTGTAGTAGT 125
Query 118 TGTGTTTGTCTCTTTGGGTTGTGTCATGTTCTTGGCGTTTCTAGCTTTTGTTATCTGGTT 177
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 126 TGTGTTTGTTTCTTTGGGTTGTGTCATGTTCTTGGCGTTTCTAGCGTTTGTTATCTGGTT 185
Query 178 CTTGATCAAGAAGAGATCCAGGAAGCACCGTGAGAAATCTGAGGCGGTTCGTGTGGATGA 237
||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||
Sbjct 186 CTTGATCAAGAAGAGATCCAGGAAGCACCGTGAGAGATCTGAAGCGGTTCGCGTGGATGA 245
Query 238 GCACTTTAAGATGAAGGAAGCTATAGTCGAAGGACCTAATGGACAAAAGTCTGTGGTGTT 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 ACACTTTAAGATGAAGGAAGCTATAGTCGAAGGACCTAATGGACAAAAGTCTGTGGTGTT 305
Query 298 ATCAGTTGAGGATGATGTTAAGATCGAAGACGCGATCAAGAGAGATGAGAAAGATCTGAA 357
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 306 ATCAGTTGAGGATGATGTTAAGATCGAAGACGCGATCAAGAGAGAAGAGAAAGATCTGAA 365
Query 358 GAAAGATGGTGGAGTTGGATCATCAGTCGTTTCCCGTTCGTGAATGAGCTTTCTTCATTC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GAAAGATGGTGGAGTTGGATCATCAGTCGTTTCCCGTTCGTGAATGAGCTTTCTTCATTC 425
Query 418 ATAATGTTGCCAATCTATTTATT-AGTATTATAATTGTG-TT-TGTGTGAATCATTTGTT 474
|||||||| || ||||||||||| | ||||| ||||||| || |||||||||||||||||
Sbjct 426 ATAATGTTACCTATCTATTTATTTA-TATTAAAATTGTGGTTGTGTGTGAATCATTTGTT 484
Query 475 TGGTGAAATAAAAAA 489
|||||||||||||||
Sbjct 485 TGGTGAAATAAAAAA 499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23308644208
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5