BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473785
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43890.1 | Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-... 1219 0.0
> AT1G43890.1 | Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-C1,
RAB18 | RAB GTPASE HOMOLOG B18 | chr1:16646732-16648639
FORWARD LENGTH=994
Length=994
Score = 1219 bits (660), Expect = 0.0
Identities = 760/809 (94%), Gaps = 3/809 (0%)
Strand=Plus/Plus
Query 88 aaaaaaGGTTCGATTTTTATCGATGGGTTCTTCGTCAGGACAACCCGAATTTGATTACTT 147
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 90 AAAAAAGGTTGGATTTTGATCGATGGGTTCTTCGTCAGGACAACCCGAATTTGATTACTT 149
Query 148 GTTTAAGGTTTTATTGATCGGAGATTCTGGTGTTGGAAAGAGTTCTCTTTTGTTGAGTTT 207
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 150 GTTTAAGGTTTTATTGATCGGAGATTCTGGTGTTGGAAAGAGCTCTCTTTTGTTGAGTTT 209
Query 208 CACATCTAATACGTTTGATGATCTTTCTCCAACAATTGGTGTTGATTTTAAGGTTAAGTA 267
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 210 CACATCTAATACCTTTGATGATCTTTCTCCAACGATTGGTGTGGATTTTAAGGTTAAGTA 269
Query 268 TCTGACAATTGGGGAAAAGAAACTCAAGCTTGCGATTTGGGATACAGCTGGGCAAGAGAG 327
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 TCTGACAATTGGAGAAAAGAAACTCAAGCTTGCGATTTGGGATACAGCTGGGCAAGAGAG 329
Query 328 ATTTAGGACTCTAACAAGTTCGTATTACAGAGGAGCTCAGGGTATAATTATGGTATATGA 387
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 ATTTAGGACGCTAACAAGTTCGTATTACAGAGGAGCTCAGGGTATAATTATGGTATATGA 389
Query 388 TGTGACACGACGAGATACATTCACAAACCTATCTGATATATGGGCTAAGGAAATCGACCT 447
|||||||||| |||| || |||||||||||||| || |||||||||||||||||||||||
Sbjct 390 TGTGACACGAAGAGACACGTTCACAAACCTATCAGACATATGGGCTAAGGAAATCGACCT 449
Query 448 CTACTCGACCAATCAGGACTGCATCAAGATGCTTGTTGGGAATAAAGTTGATAAGGAGAG 507
||| ||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 450 CTATTCGACTAATCAGGATTGCATTAAGATGCTTGTCGGGAATAAAGTTGATAAGGAGAG 509
Query 508 TGAAAGAGCTGTCTCGAAAAAAGAAGGCATAGACTTTGCTCGGGAGTACGGATGTTTGTT 567
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 TGAAAGAGCTGTTTCTAAAAAAGAAGGCATAGACTTTGCTCGGGAGTACGGATGTTTGTT 569
Query 568 TCTGGAATGTAGTGCAAAAACTCGGGTTAATGTGGAGCAATGTTTTGAAGAGCTTGTTCT 627
|||||| ||||||||||| ||||| || || || ||||||||||||||||||||||||||
Sbjct 570 TCTGGAGTGTAGTGCAAAGACTCGAGTCAACGTTGAGCAATGTTTTGAAGAGCTTGTTCT 629
Query 628 TAAGATATTGGAAACACCGAGTCTTACTGCTGAAGGTTCGTCTGGCGGGAAGAAGAACAT 687
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 630 TAAGATATTGGAAACGCCGAGTCTTACTGCTGAAGGTTCGTCTGGCGGAAAGAAGAACAT 689
Query 688 CTTCAAACAAAACCCAGCACAAACCAGCAGTGCTTCGTCGAGCTACTGCTGTTCGTCTTA 747
||||||||||||||| ||||| |||| |||| | ||||||||||||||||| ||||||||
Sbjct 690 CTTCAAACAAAACCCCGCACAGACCACCAGTACCTCGTCGAGCTACTGCTGCTCGTCTTA 749
Query 748 GACATGGCTTTACGGTTTATGACAAAATTACACTCGTT-CTCATCATCTTGTTCTTGATT 806
||||||| ||||| |||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 750 GACATGGTTTTACAGTTTATGACAAA-TTACACTC-TTGCTCATCATCTTGTTCTTGATT 807
Query 807 GTCTTTTTGCTTCCCAAAACCGCAGCATCTTGGATGTATATCTTAACCCTGATTTCAAAG 866
|||| |||| || || |||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 808 GTCTCTTTGTTTTCCTAAACCGCAGCATCTTGGATGTAAATCTCAACCCTGATTTGAAAG 867
Query 867 TTGTGTTCCCTAGTTTCCAATCTGGGATT 895
|||||||| |||||||| ||||| |||||
Sbjct 868 TTGTGTTCACTAGTTTCGAATCTCGGATT 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43703707890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5