BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473787
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43860.1 | Symbols: | sequence-specific DNA binding transcr... 1799 0.0
> AT1G43860.1 | Symbols: | sequence-specific DNA binding transcription
factors | chr1:16622068-16624469 REVERSE LENGTH=1373
Length=1373
Score = 1799 bits (974), Expect = 0.0
Identities = 1100/1162 (95%), Gaps = 3/1162 (0%)
Strand=Plus/Plus
Query 1 AAAA-TTAGTGGCGGCGAGAGGGAAACCCAAATTCACGAGAGAGAAGAATGTCTAAGACG 59
|||| ||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||||
Sbjct 37 AAAATTTAGTGGCGGCGAGAGGGAAACCAAAATTCGCGAGAGAGAAGTATGTCGAAGACG 96
Query 60 CTGGTGCAGCCTGTAGGTCAAAAGAGGTTGACGAATGTTGCAGTGGTTCGTCTCAAAAAG 119
|||||||| || ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 97 CTGGTGCAACCGGTAGGGCAAAAGAGGTTGACTAATGTTGCAGTGGTTCGTCTCAAAAAG 156
Query 120 CAAGGCAATCGCTTCGAGATCGCTTGTTACAAGAATAAGGTCCTTTCATGGCGGTCTGGC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 CAAGGCAATCGCTTCGAGATCGCTTGTTACAAGAATAAGGTCCTTTCATGGCGGTCTGGC 216
Query 180 GTGGAGAAGGATATAGATGAAGTGCTTCAGTCACATACTGTTTATTCAAATGTTTCGAAA 239
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 217 GTGGAGAAGGATATAGATGAAGTGCTACAGTCGCATACTGTTTATTCAAATGTTTCGAAA 276
Query 240 GGAGTTCTTGCCAAATCTAAAGACTTGATGAAGGCGTTTGGATCAGATGATCATACGAAA 299
||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 277 GGAGTTCTTGCAAAATCGAAAGACTTGATGAAGTCGTTTGGATCAGATGATCATACGAAA 336
Query 300 ATATGCATCGATATTTTGGAGAAAGGAGAGCTTCAAGTTGCTGGAAAAGAGAGAGAATCA 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 337 ATATGCATCGATATTTTGGAGAAAGGAGAGCTTCAAGTTGCTGGAAAAGAAAGAGAATCA 396
Query 360 CAGTTCTCAAGTCAGTTTCGGGATATTGCAACGATTGTTATGCAGAAAACCATCAACCCT 419
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 397 CAGTTCTCAAGCCAGTTTCGGGATATAGCAACGATTGTTATGCAGAAAACTATCAACCCT 456
Query 420 GAAACCCAACGCCCTTATACCATCGGCATGGTGGAGCGCCTAATGCATGAAATTCATTTC 479
||||| ||||| |||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 457 GAAACACAACGACCTTATACCATCAGCATGGTAGAGCGCCTAATGCATGAAATTCATTTT 516
Query 480 GCGGTTGATCCTCATAGCAATTCCAAGAAGCAGGCGCTTGATGTCATCCGTGAGCTGCAA 539
|| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 517 GCTGTTGATCCTCATAGTAATTCCAAGAAGCAGGCACTTGATGTCATCCGTGAGCTGCAA 576
Query 540 AAGCAGTTCCCTATAAAGCGTTCTCCGATGAGACTGCGCCTCACTGTTCCTGTTCAAAAC 599
||||| |||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 577 AAGCACTTCCCTATAAAGCGTTCTCCAATGAGACTGCGTCTTACTGTTCCTGTTCAAAAT 636
Query 600 TTCCCCTCACTAT-TGGAGAAGCTAAAAGAATGGGACGCTAGCGTTGTCTCCAAAGACGA 658
|||||||| || | |||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 637 TTCCCCTCGCT-TCTGGAGAAGCTAAAAGAATGGGATGGTAGTGTTGTCTCCAAAGACGA 695
Query 659 ATCTGGAACACAGATGTCCACTGTTTGCGAGATGGAACCAGGCCTATTCCGAGAGTGTGA 718
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 696 ATCTGGAACACAGATGTCCACTGTCTGCGAGATGGAACCGGGCCTATTCCGAGAGTGTGA 755
Query 719 TTCTCATGTGAGAAATATGCAGGGGAGACTAGAAATACTCGCTGTATCAGTTCATGCAGA 778
||| |||||||| | ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 756 TTCCCATGTGAGGAGTATCCAGGGAAGACTAGAAATACTCGCTGTATCAGTTCATGCAGA 815
Query 779 AGGTGATACAAACATGGATCATTACGATGAGCATGATGATATGGCACTGCAAACCCACAA 838
|||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 816 AGGTGACACAAGCATGGATCATTACGATGAGCATGATGATATGGCATTGCAAACCCACAA 875
Query 839 GCCGTTGTTACCTGCTGATACTGAGACTAAGGATTTGACCGATCCCGTCATCGAGCTTAG 898
|||||||||||||||||| |||||||||||||||||||||||||||||| | || |||||
Sbjct 876 GCCGTTGTTACCTGCTGAGACTGAGACTAAGGATTTGACCGATCCCGTCGTTGAACTTAG 935
Query 899 CAAGAAACTGCAGAAGCAAGAGATAAGTACTGCAGATACCATAAAGCAAGAAGGAGGAGA 958
||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||
Sbjct 936 CAAGAAACTGCAGAAGCAAGAGATAAGTACTACAGATAACATAAAGCAAGAAGGTGGAGA 995
Query 959 AGAAAAGAAGGGGACCAAGTGCAGCACTTGCAACACGTTCGTTGGGGAGGCTAAGGAATA 1018
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 996 AGAAAAGAAGGGGACCAAGTGCAGCACTTGCAACACGTTCGTTGGAGAGGCTAAGCAATA 1055
Query 1019 TAGAGAACACTGTAAGAGTGATTGGCACAAACACAACCTTAAGCGTAAGACTCGTAAACT 1078
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1056 CAGAGAGCACTGTAAGAGTGATTGGCACAAACACAACCTTAAGCGTAAGACTCGGAAACT 1115
Query 1079 CCCTCCTCTTACTGCTGAAGAATGCATGTCTGAGATTGACATGGACGACTCTAGAGCAGA 1138
||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 CCCTCCTATTAGTGCTGACGAATGCATGTCTGAGATTGACATGGACGACTCTAGAGCAGA 1175
Query 1139 TTTGAAAGACTACTCTTTCTGA 1160
||||||||||||||||||||||
Sbjct 1176 TTTGAAAGACTACTCTTTCTGA 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5