BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473790

Length=687
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G20600.1 | Symbols:  | AP2/B3-like transcriptional factor fa...   191    8e-48


> AT1G20600.1 | Symbols:  | AP2/B3-like transcriptional factor 
family protein | chr1:7133111-7134416 FORWARD LENGTH=893
Length=893

 Score =  191 bits (103),  Expect = 8e-48
 Identities = 115/121 (95%), Gaps = 0/121 (0%)
 Strand=Plus/Plus

Query  426  GTTGATGTCGAGCGACGTCGATAAAGATCAAAGCAGGCTCATGTTATCTAAGGAGCAAGT  485
            ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct  384  GTTGATGTCGAGCGACGTCGATACAGATCAAAGCAGGCTCATGTTATCGAAGGAGCAAGT  443

Query  486  GAATGAGAAGATGCTTCCTTTTCTAGAAGAATCAGAGGATCCGGTAAAAGGGTTTGTTGT  545
            ||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct  444  GAAGGAGAAGATGCTTCCTTTTCTAGAAGAATCAGAGGATCCGGTAAAGGGGGTTGATGT  503

Query  546  T  546
            |
Sbjct  504  T  504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33255005314


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5