BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473791

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G03175.1 | Symbols:  | Protein kinase superfamily protein | ...   270    7e-72
  AT2G40120.1 | Symbols:  | Protein kinase superfamily protein | ...   254    7e-67


> AT4G03175.1 | Symbols:  | Protein kinase superfamily protein 
| chr4:1402187-1402864 REVERSE LENGTH=420
Length=420

 Score =  270 bits (146),  Expect = 7e-72
 Identities = 166/176 (94%), Gaps = 0/176 (0%)
 Strand=Plus/Plus

Query  307  GAGAGCAATAAGATTGAATACATAATCACAGAAGAATTATGCTTGGAAGAACAATTACAT  366
            ||||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||| 
Sbjct  241  GAGAGCAATGAGATTGAATACATAATCACAGAAGAATCAAGCTTGGAAGAACAACTACAA  300

Query  367  GTTAGTGATGAATTGTTCTTAGATTTTGTAAAGAGTCTACTTGAGATCAATCCATTGAGA  426
            ||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||
Sbjct  301  GTTAGTGATGAATTGTTCTTAGATTTTGTAAGGACTCTACTTGAGATCAATCCTTTGAGA  360

Query  427  CGTCCAACAGCTCTCGAGGTACTTAACCACCCTTGGCTCTCTTCCTCTTCTTACAA  482
            ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct  361  CGTCCAACAGCTCTCGAGGCACTTAACCACCCTTGGCTCTCTTCTTCTTCTTACAA  416


 Score =  176 bits (95),  Expect = 2e-43
 Identities = 115/125 (92%), Gaps = 0/125 (0%)
 Strand=Plus/Plus

Query  128  CAGTAGCGATGATATTGGTTCGGATTGTTACGGTTTTAGGTCTTCTAGAAACAGAGATGC  187
            |||||||||||||||||| | |||||||| | |||||||||| | | |||||||||||||
Sbjct  116  CAGTAGCGATGATATTGGCTAGGATTGTTGCAGTTTTAGGTCCTATCGAAACAGAGATGC  175

Query  188  TAGAGAAAGGTCAAGAGACACATAAATACTTCACTAAAGAGTATGATCTCTACCACTTAA  247
            || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  176  TAAAGAAAGGTCAAGAGACACATAAATACTTCACCAAAGAGTATGATCTCTACCACTTAA  235

Query  248  ATGAG  252
            | |||
Sbjct  236  ACGAG  240


 Score = 95.3 bits (51),  Expect = 5e-19
 Identities = 58/61 (95%), Gaps = 1/61 (2%)
 Strand=Plus/Plus

Query  1   GCTCCTGAAGTGATTCTCGGGCTTCCATATGACGAAAA-ATTGATTTGTGGTCTTTTGGG  59
           |||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct  7   GCTCCTGAAGTGATTCTCGGGCTTCCATATGACGAAAAGATCGATTTGTGGTCTCTTGGG  66

Query  60  T  60
           |
Sbjct  67  T  67


> AT2G40120.1 | Symbols:  | Protein kinase superfamily protein 
| chr2:16754939-16757592 REVERSE LENGTH=2245
Length=2245

 Score =  254 bits (137),  Expect = 7e-67
 Identities = 167/181 (92%), Gaps = 3/181 (2%)
 Strand=Plus/Plus

Query  307   GAGAGCAATAAGATTGAATACATAATCACAGAAGAATTATGCTTGGAAGAACAATTACAT  366
             ||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| 
Sbjct  1865  GAGAGCAATGAGATTGAATACATAATCACAGAAGAATCAAGCTTGGAAGAACAATTACAA  1924

Query  367   GTTAGTGATGAATTGTTCTTAGATTTTGTAAAGAGTCTACTTGAGATCAATCCATTGAGA  426
             ||||||||||||||||||||||||||||||| || ||||||||| |||||||| ||||||
Sbjct  1925  GTTAGTGATGAATTGTTCTTAGATTTTGTAAGGACTCTACTTGATATCAATCCTTTGAGA  1984

Query  427   CGTCCAACAGCTCTCGAGGTACTTAACCACCCTTGGCTCTCTTCCTCTTC-T-T-ACAAT  483
             |||||||||||||| |||| |||||||||||||||||||||||| ||||| | | |||||
Sbjct  1985  CGTCCAACAGCTCTAGAGGCACTTAACCACCCTTGGCTCTCTTCTTCTTCATCTTACAAT  2044

Query  484   T  484
             |
Sbjct  2045  T  2045


 Score =  183 bits (99),  Expect = 1e-45
 Identities = 207/255 (81%), Gaps = 24/255 (9%)
 Strand=Plus/Plus

Query  1     GCTCCTGAAGTGATTCTCGGGCTTCCATATGACGAAAA-ATTGATTTGTGGTCTTTTGGG  59
             |||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct  1631  GCTCCTGAAGTGATTCTCGGGCTTCCATATGACGAAAAGATCGATTTGTGGTCTCTTGGG  1690

Query  60    T-T-TTTCATCAAAAACTTTATCTCACATACTGAAGAAACTAACTAGTAACACAAATAAA  117
             | | ||| | | | |||    |||  | | |||  | |  |  || ||  | |     ||
Sbjct  1691  TGTATTTTAGC-AGAAC----TCT-GC-T-CTGGTG-AGGT-TCT-GTTTC-C-----AA  1733

Query  118   ATGTATCAATCAGTAGCGATGATATTGGTTCGGATTGTTACGGTTTTAGGTCTTCTAGAA  177
             | |    || |||||||||||||||||| | |||||||| | |||||||||| | |||||
Sbjct  1734  ACG----AAGCAGTAGCGATGATATTGGCTAGGATTGTTGCAGTTTTAGGTCCTATAGAA  1789

Query  178   ACAGAGATGCTAGAGAAAGGTCAAGAGACACATAAATACTTCACTAAAGAGTATGATCTC  237
             ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct  1790  ACAGAGATGCTAGAGAAAGGTCAGGAGACACATAAATACTTCACCAAAGAGTATGATCTC  1849

Query  238   TACCACTTAAATGAG  252
             ||||||||||| |||
Sbjct  1850  TACCACTTAAACGAG  1864



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23157941767


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5