BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473794
Length=1796
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2516 0.0
> AT1G43980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:16687637-16689502 REVERSE LENGTH=1866
Length=1866
Score = 2516 bits (1362), Expect = 0.0
Identities = 1655/1799 (92%), Gaps = 9/1799 (1%)
Strand=Plus/Plus
Query 1 ATGCCGTCATCTTTCTACTTCTCGCGTCTCGTAGACCGCTCTTTGCTCTCAAAGTGTCCG 60
|||||||| ||| |||||||||||||||||||| |||||||||| |||||||||| |||
Sbjct 1 ATGCCGTCCTCTCTCTACTTCTCGCGTCTCGTAAACCGCTCTTTACTCTCAAAGTCTCCA 60
Query 61 ACTTTAACCAGAATCGTCCATGCCCAGCTCCTCAAAGCTGGTTTCATACGCACAACTTAT 120
|||||| ||| ||||||||||||||||||||| ||||||| ||| ||||||| ||||||
Sbjct 61 ACTTTAGCCAAAATCGTCCATGCCCAGCTCCTGGAAGCTGGATTCGTACGCACTACTTAT 120
Query 121 TGGGGAAACCGTTGCCTTCAGCTCTACTTCAAATCCGGCGCCGTCATCGATGCTTTCCGA 180
|||||||| || |||||||||||||||||||||||||| |||||||| |||| ||| |
Sbjct 121 TGGGGAAATCGCTGCCTTCAGCTCTACTTCAAATCCGGATCCGTCATCAATGCCCTCCAA 180
Query 181 TTGTTCGACGATATTCCTGATAAGAACACTATATCATGGAACGTTTGCTTGAAGGGCTTG 240
|||||||||||||||||||||||||||| ||| | |||||||||||||| ||||| |||
Sbjct 181 CTGTTCGACGATATTCCTGATAAGAACACCATAACCTGGAACGTTTGCTTAAAGGGTTTG 240
Query 241 TTTAAAAATGGTTTTCTCAATAACGCACTTGACCTGTTCGATGAAATGCCTGAACGAGAT 300
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 TTTAAAAATGGTTATCTCAATAACGCACTTGACCTGTTCGACGAAATGCCTGAACGAGAT 300
Query 301 GTTGTTAGCTGGAATACAATGATTTCAGGGTTTGTTTCTTGTGGGTTTCCTGAATATGCG 360
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
Sbjct 301 GTTGTTAGCTGGAATACAATGATTTCAGGGTTGGTTTCTTGTGGGTTTCATGAATATGGG 360
Query 361 ATTAGGGTTTTCTTTGATATGCAGAGATGGGTGATTCGACCAACGGAGTTTACGTTTTCG 420
|||||||||||||| |||||||||||||||| |||| |||||||||||||||| ||||||
Sbjct 361 ATTAGGGTTTTCTTCGATATGCAGAGATGGGAGATTAGACCAACGGAGTTTACTTTTTCG 420
Query 421 ATTCTAGCTTCTCTTGTTTCTTGTGTTCGTCATGGGGAACAGATTCATGGTAATGCTATT 480
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 ATTCTAGCTTCTCTTGTTACTTGTGTTCGACATGGGGAACAGATTCATGGTAATGCTATT 480
Query 481 TGTAGTGGCGTTAGTAAGTCTAATTTGGTGGTGTGGAATTCACTGATGGATATGTATAGA 540
|||||||| || |||| || ||||||||| |||||||| || | |||||||||||||||
Sbjct 481 TGTAGTGGTGTGAGTAGGTATAATTTGGTTGTGTGGAACTCTGTTATGGATATGTATAGA 540
Query 541 AGAATAGGAGTTTTTGATTATGCGATATCGGTGTTTTTAACTATGGAGGATAGAGATGTT 600
||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 541 AGATTAGGAGTTTTTGATTACGCGTTATCGGTGTTTTTAACTATGGAGGATAGAGATGTT 600
Query 601 GTCTCGTGGAACTGTTTGATTTTGTCTTGTTCTGATTCTGGTAACAAAGAAGTGGCTTTG 660
|||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 601 GTCTCGTGGAACTGTTTGATTTTGTCTTGTTCCGATTCTGGTAATAAGGAAGTGGCTTTG 660
Query 661 GATCAGTTTTGGTTAATGAGAGAAATGGAGAATAAACCTGATGAATATACAGTTTCGATG 720
|||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 661 GATCAGTTTTGGTTGATGAGAGAAATGGAGATTCAACCTGATGAATATACAGTTTCGATG 720
Query 721 GTTGTGTCTATTTGCTCTGATTTACAAGATTTGTGCAAGGGTAAGCAGGCTATTGCTCTT 780
||||||||||||||||||||||||| ||| || | ||||||||||||||| ||||||||
Sbjct 721 GTTGTGTCTATTTGCTCTGATTTACGAGAACTGAGTAAGGGTAAGCAGGCTCTTGCTCTT 780
Query 781 TGCATCAAGATGGGGTTTTTATTTAACAACATTGTTTTAGGATCTGGGATTGACATGTTT 840
|| ||||||||||||||||||| ||||| |||||||||||| |||||||||| ||||||
Sbjct 781 TGTATCAAGATGGGGTTTTTATCTAACAGTATTGTTTTAGGAGCTGGGATTGATATGTTT 840
Query 841 TCCAAATGCAACAGATTGGATGATTCGGTTAAGCTTTTTAGACAGTTGGAGAAATGGGAT 900
|||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 841 TCCAAATGTAACAGATTGGATGATTCGGTTAAACTTTTTAGAGAGTTGGAGAAATGGGAT 900
Query 901 TCGGTGTTGTGCAATTCCATGATCGGTAGCTATTCGTGGCATTGTTGTGGAGAAGATACT 960
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 901 TCAGTGTTGTGCAATTCCATGATCGGTAGCTATTCGTGGCATTGTTGTGGAGAAGATGCT 960
Query 961 CTTAC-GCTCTTTATTGTTGCAATGAGGCAGAGCATTAGTCCCGATAAGTTCACGTTTAG 1019
||| | ||||||||| |||| |||| |||||| |||| || |||||||||||||| ||
Sbjct 961 CTT-CGGCTCTTTATCCTTGCCATGACGCAGAGTGTTAGGCCTGATAAGTTCACGTTCAG 1019
Query 1020 TAGCGTTCTGAGCTCGATGAATGCCGTGATGCTAGGTCACGGAGCACAAGTTCATGCTTT 1079
||||||||||||||| |||||||| |||||||||| |||||||||| | |||||| ||||
Sbjct 1020 TAGCGTTCTGAGCTCAATGAATGCTGTGATGCTAGATCACGGAGCAGACGTTCATTCTTT 1079
Query 1080 GGCTACTAAGTTAGGGTTTGATTCGGACACGACAGTAGCCACCTCACTCATGGAGATGTA 1139
|| || ||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||
Sbjct 1080 GGTTATTAAGTTAGGGTTTGATTTGGATACGGCAGTAGCTACCTCACTCATGGAGATGTA 1139
Query 1140 CTTCAAAACCGGTTCAGTTGATTCAGCAATGGGAGTGTTTGCCATAACAGATGAAAAAGA 1199
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 1140 CTTCAAAACCGGTTCAGTTGATTTAGCAATGGGAGTGTTTGCCAAAACAGATGGAAAAGA 1199
Query 1200 TTTGATCTTTTGGAACACAGTGATTATGGGTTTGGCGAGAAACAGCAGAGCAGTTGAGTC 1259
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1200 TTTGATCTTTTGGAACACAGTGATAATGGGCTTGGCGAGAAACAGTAGAGCAGTTGAGTC 1259
Query 1260 CCTTTCTGTTTTCAATCAATTGCTGATGGACGAAAGAGGTCTGAAACCGGATAGAGTGAC 1319
|||| | |||||||||||||||||||| || || | |||||||||| |||||||||||
Sbjct 1260 CCTTGCCATTTTCAATCAATTGCTGATGAAC-CAA-A-GTCTGAAACCCGATAGAGTGAC 1316
Query 1320 TTTCATGGGTATCTTAGTAGCTTGTTGTTATGCGGGCTTTGTTAATAAAGGAATTCAGAT 1379
|| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1317 GTTAATGGGTATCTTAGTAGCTTGTTGTTATGCTGGCTTTGTTAATGAAGGAATTCAGAT 1376
Query 1380 ATTCTCTTCAATGGAAAAGACTCATGGTGTTGATCCTGGCAACGAGCATTACGCCTGTAT 1439
||||||||||||||||||| ||||||| ||| |||| || ||||||||||||||||||||
Sbjct 1377 ATTCTCTTCAATGGAAAAGGCTCATGGAGTTAATCCCGGGAACGAGCATTACGCCTGTAT 1436
Query 1440 AATCGAATTGCTTTGCAGAG-CAGGTATGATCAATGAAGCAAAGGACATTGCTGACAAGA 1498
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1437 AATCGAATTGCTTTGCAGAGTC-GGTATGATCAATGAAGCAAAGGACATTGCTGACAAGA 1495
Query 1499 TACCTTTTGAACCAAGCTCTCATATCTGGGAACCGATTCTCTGTGCATCTGTAGATGTTG 1558
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 1496 TACCTTTTGAACCAAGCTCTCATATCTGGGAACCGATTCTCTGTGCATCTCTTGATCTTG 1555
Query 1559 GAGACACGAGACTCGCTGAAAGTGTAGCGAAAA-TAATGATAGAATCGGAACCAAAGTCA 1617
||||||| ||||||||||| | ||||||||||| || || ||||||| ||||||||||||
Sbjct 1556 GAGACACAAGACTCGCTGAGACTGTAGCGAAAACTA-TGTTAGAATCTGAACCAAAGTCA 1614
Query 1618 TCGTTTCCTTACCTGGTTCTGATTAAGCTATACGAGATGACATGGCGCTGGGAAAATTCA 1677
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1615 TCTTTTCCTTACCTGGTTCTGATTAAGATATACGAGATGACATGGCGCTGGGAAAATTCA 1674
Query 1678 GTGAAGTTAAGATACATCATGAATGAACATAAATTGAAATCGACTCAAGGATCGAGCAAG 1737
||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1675 GTGAAGTTAAGATACGCCATGAATGAACATAAGTTGAAATCGGCTCAAGGATCGAGCAAG 1734
Query 1738 ATCGGTATAAAGAGCAGTGTGTACAGCTTCGAAGCTGAACAGTTGCAAATTCACGGAGG 1796
||| ||||| |||||||||||| ||||||||| ||||| |||||||||||||| |||||
Sbjct 1735 ATCAGTATAGAGAGCAGTGTGTTCAGCTTCGAGGCTGACCAGTTGCAAATTCATGGAGG 1793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88854964650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5