BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473796
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44080.1 | Symbols: | F-box family protein with a domain of... 1530 0.0
AT2G26160.1 | Symbols: | F-box family protein with a domain of... 337 2e-91
> AT1G44080.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr1:16753944-16755670 REVERSE
LENGTH=1044
Length=1044
Score = 1530 bits (828), Expect = 0.0
Identities = 973/1045 (93%), Gaps = 2/1045 (0%)
Strand=Plus/Plus
Query 1 ATGGGTAAAGTTGGGTGGTCTGATTTACATGAAGATCTCATAGATTTGTTAGCTAATAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGGTAAAGTTGGGTGGTCTGATTTACATGAAGATCTCATAGATTTGTTAGCCAATAAT 60
Query 61 TTATCTTCAAACATCAATCTCCTCCGTTTCCGTAGCATCTGTAAACCCTGGCGTTCCACG 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTATCTTCCAACATCAATCTCCTCCGTTTCCGTAGCATCTGTAAACCCTGGCGTTCCACG 120
Query 121 ATTGCGACCAAGAAGCGTCTCCATAACCACTTTGAACGTAACCTTCCTACTTTCAAGAAG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTGCGACCAAGAAGCGTCTCCATAACCACTTTGAACGTAACCTTCCTACTTTCAAGAAG 180
Query 181 ACAAAGACTGTTGTCTCTCCCACCACTTTCTTCCGTGTAACTCTCCCTTCTCCATGTCCT 240
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 181 AAAAAGACTGTTGTCTCTCCCTCCACTTTCTTCCGTGTAACTCTCCCTTCTCCATGTCGT 240
Query 241 AACAAAGGGTGGCTGATTAAAAACAGACAAGTCTCTGAATCTAGTAAGAATAATCTCTTG 300
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 AACAAAGGATGGCTGATTAAAAACAGACAAGTCTCTGAATCTAGTAAAAATAATCTCTTG 300
Query 301 TGTCCTCTGTCTGGCAAGCCCATCACCCCTTCCGACAAAACCCTAGACCTTATGAAGCTC 360
| |||||| |||||||| |||| ||||||||||||||||||||||||||| ||||| ||
Sbjct 301 TCTCCTCTTTCTGGCAAAACCATAACCCCTTCCGACAAAACCCTAGACCTTTTGAAGGTC 360
Query 361 G-GTGTTTCGGAAATTCGTCAATCTTACAACTCTTCTGCGAATTCGGCTAGAGTTGTTTT 419
| ||||||| || ||||||||||||||||||| ||| ||| |||||| ||||||||||||
Sbjct 361 GAGTGTTTCAGAGATTCGTCAATCTTACAACTATTC-GCGGATTCGGATAGAGTTGTTTT 419
Query 420 CCTAAACAATATGTTTTTCGTAGTTGACTTCAAAAACGAAATTTGGTGTTGCAAAAGCGG 479
|||| ||||| | ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 420 CCTAGACAATGTCTTTTTCGTAGTTGACTTCAAAAACGAAATTTGGTGTTGCAAGAGTGG 479
Query 480 AGAAGAAAGTATACGTTGGACAAGAATAAACAATGAAGAAGCTGAAGGTTTTTTGGATAT 539
|||||||| || || |||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 480 AGAAGAAACTAGACATTGGACAAGAATCAACAATGAAGAAGCTAAAGGTTTTTTGGATAT 539
Query 540 TATACTTCACAAAGGAAAGGTCTATGCATTCGACTTAACCGGAGCAATTTGGTGGATTAG 599
|||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 540 TATACTTCACAAAGGAAAAATCTATGCATTAGACTTAACAGGAGCAATTTGGTGGATTAG 599
Query 600 TTTATCTGAACTCAGCATATATCAATTCGGACCTTCAACTCCATTAGACTACTACGACAT 659
|||||||||||||||||||||||||| |||||||||||||||| | |||| |||||| ||
Sbjct 600 TTTATCTGAACTCAGCATATATCAATACGGACCTTCAACTCCAGTGGACTTCTACGAAAT 659
Query 660 TGATAATTGCAAAGAAAAGAGATTCGTCGAGTATTGTGGAGATCTCTGCGTTATTCATCG 719
|||||||||||||||||||||| |||| |||||||||||||| || |||||| |||||||
Sbjct 660 TGATAATTGCAAAGAAAAGAGACTCGTGGAGTATTGTGGAGAACTATGCGTTGTTCATCG 719
Query 720 TTTCTGTAAGAAATTTCGCGTAAATCGAGTTCTTAGAGAGAGAACCGTTGGTTTTAAGGT 779
|||| |||||||||| ||||||| |||||||||| |||||||||||| ||||||||||
Sbjct 720 ATTCTATAAGAAATTTTGCGTAAAGCGAGTTCTTACCGAGAGAACCGTTTGTTTTAAGGT 779
Query 780 TTACAAGATGGACAAGAATTTGGTAAAATGGGTTGAGGTCAGTTCCTTGGGAGACAAGGC 839
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 780 TTATAAGATGGACAAGAATTTGGTAGAATGGGTTGAGGTCAGTTCCTTGGGAGACAAGGC 839
Query 840 ACTCATTGTGGCTACGGATAGTTGTTTTTTGGTCTTAGCCTCCGAGTACTATGGATGTTT 899
|||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACTCATTGTGGCGACGGACAATTGTTTTTTGGTCTTAGCCTCCGAGTACTATGGATGTTT 899
Query 900 GGAGAATGCTATCTACTTCAATGACGGGGAAGATGTTAGTGTGTTTAAGCTTGATGATGG 959
|||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |
Sbjct 900 GGAGAATGCTATTTACTTCAACGACCGGGAAGATGTTAGTGTGTTTAAGCTTGATGATTG 959
Query 960 TAGCATCATTAACAAGCAGATTGATTCTTCTTCTTCATCTTCTCATGAGAGTTGTTTCCA 1019
|||||| |||| |||||| ||| ||||||||||||||||||||||| | |||||||||||
Sbjct 960 TAGCATTATTACCAAGCAAATTAATTCTTCTTCTTCATCTTCTCATCAAAGTTGTTTCCA 1019
Query 1020 GATGTTCTCTGCTCCTTTTCTCTGA 1044
|||||| ||| || ||||| |||||
Sbjct 1020 GATGTTTTCTACTTCTTTTTTCTGA 1044
> AT2G26160.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr2:11137978-11139451 REVERSE
LENGTH=1474
Length=1474
Score = 337 bits (182), Expect = 2e-91
Identities = 418/527 (79%), Gaps = 36/527 (7%)
Strand=Plus/Plus
Query 407 CTAGAGTTGTTTTCCTAAACAATATGTTTTTCGTAGT-TGACTTCAAAAACGAAATTTGG 465
||||||||||||||||| ||||| || |||||| ||| ||| | || |||| |||
Sbjct 449 CTAGAGTTGTTTTCCTAGACAATCTGATTTTCGCAGTCGGAC-AGGATGACAAAATCTGG 507
Query 466 TGTTGCAAAAGCGGAGAAGAAAGTA-TACG--T-TGGACAAGAATAAACAATGAAGAAGC 521
|| ||||| || |||||||| |||| || | | ||||||| ||| || || | |||
Sbjct 508 TGCTGCAAGAGTGGAGAAGAGAGTAGTA-GAATATGGACAAAAATCAA-AA--ACCAAGT 563
Query 522 TGAAGGTTTTTTGGATATTATACTTCACAAAGGA-AAGGTCTATGCATTCGACTTAACCG 580
||||| ||| ||||| ||||||||||| |||||| || |||||||| || ||| ||||||
Sbjct 564 TGAAGATTTCTTGGACATTATACTTCATAAAGGACAA-GTCTATGCCTTAGACCTAACCG 622
Query 581 GAGCAATTTGGTGGATTAGTTTATCTGAACTCAGCAT-ATATCAATTCGGACCTTCAACT 639
| ||||||||||||||||||||||| |||||| | | ||||||| |||||||| |
Sbjct 623 GCGCAATTTGGTGGATTAGTTTATCACCGCTCAGCCTCCT-TCAATTCACACCTTCAATT 681
Query 640 CCATTAGACTACTAC-GACATTGATAATTGCAAAGAAAAGAGATTCGTCGAGTATTGTGG 698
||| | |||||| || || | ||||| |||| | | |||||| |||| |||||||||||
Sbjct 682 CCAATGGACTACGACGGATA-TGATAGTTGC--A-ACAAGAGACTCGTTGAGTATTGTGG 737
Query 699 AGATCTCTGCGTTATTCATC--GTT-TCTGT-AAGAAATTTCGCGTAAAT-CG-AGTTCT 752
|||||| ||| ||||||||| || || | |||||| || || || || || |
Sbjct 738 AGATCTATGCATTATTCATCAACTTCGCT-TAAAGAAA----GCTTATATCCGAAGGAGT 792
Query 753 TAGAGAGAGAACCGTTGGTTTTAAGGTTTACAAGATGGACAAGAATTTGGTAAAATGGGT 812
| | || | || ||||||||||||||||| ||||||||| || || ||| |||||||||
Sbjct 793 CA-A-AG-G-ACAGTTGGTTTTAAGGTTTATAAGATGGACGAGTATGTGGCAAAATGGGT 848
Query 813 TGAGGTCAGTTCCTTGGGAGACAAGGCACTCATTGTGGCTACGGATAGTTGTTTTT-TGG 871
|||||| || ||||||||||||||||||||||||||||||| ||| ||||||||| ||
Sbjct 849 TGAGGTTAGGTCCTTGGGAGACAAGGCACTCATTGTGGCTAGGGACAGTTGTTTTACTGT 908
Query 872 TCTTAGCCTCCGAGTACTATGGATGTTTGGAGAATGCTATCTACTTC 918
| | ||||||||||||| ||||||||||| | ||| |||||||||||
Sbjct 909 TGT-AGCCTCCGAGTACCATGGATGTTTGAACAATTCTATCTACTTC 954
Score = 200 bits (108), Expect = 2e-50
Identities = 248/313 (79%), Gaps = 19/313 (6%)
Strand=Plus/Plus
Query 80 TCCTCCGTTTCCGTAGCATCTGTAAACCCTGGCGTTCCACGATTGCGACCA-AGAAGCGT 138
|||||||| | |||||||||||||||||||||||||| || ||||| || |||| |
Sbjct 80 TCCTCCGTGTACGTAGCATCTGTAAACCCTGGCGTTCGGCGGCTGCGA-CACCGAAGAG- 137
Query 139 CTCCATAACCACTTTG-AACGTAACCTTCCTACTTTCAAGAAGACAAAGACTGTTGTCTC 197
|| | || || ||| | ||||||| | ||||| || | |||||||| ||||
Sbjct 138 CT---T--TCA--ATGCAACCT-TCCTTCCT-CCAACAAGATGATAGAGACTGTTCTCTC 188
Query 198 TCCCACCACTTTCTTCCGTGTAACTCTCCCTTCTCCATGTCCTAACAAAGGGTGGCTGAT 257
||||||||||||||||||||||||| ||||||| ||||| || ||||||| ||||||||
Sbjct 189 TCCCACCACTTTCTTCCGTGTAACTGGCCCTTCTTCATGTTCTTACAAAGGATGGCTGAT 248
Query 258 TAAAAACAGACAAGTCTCTGAATCTAGTAAGAATAATCTCTTGTGTCCTCTGTCTGGCAA 317
| || || ||||||||||||||| ||||||| ||||||||||| |||| | | | || |
Sbjct 249 CAGAACCAAACAAGTCTCTGAATCCAGTAAGATTAATCTCTTGTCTCCTTTCTTTCGCCA 308
Query 318 GC-CCATCACCCCTTC-CGACAAAACCCTAGACCTTATGAAGCTCG-GTGTTTCGGAAAT 374
|| || | |||||||| | ||||| ||||||||||| |||| | | | ||||| || ||
Sbjct 309 GCTCC-TAACCCCTTCACAACAAA-CCCTAGACCTTTTGAAATTTGAG-GTTTCAGAGAT 365
Query 375 TCGTCAATCTTAC 387
||| |||||||||
Sbjct 366 TCGCCAATCTTAC 378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51188595793
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5