BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473796 Length=1044 Score E Sequences producing significant alignments: (Bits) Value AT1G44080.1 | Symbols: | F-box family protein with a domain of... 1530 0.0 AT2G26160.1 | Symbols: | F-box family protein with a domain of... 337 2e-91 > AT1G44080.1 | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr1:16753944-16755670 REVERSE LENGTH=1044 Length=1044 Score = 1530 bits (828), Expect = 0.0 Identities = 973/1045 (93%), Gaps = 2/1045 (0%) Strand=Plus/Plus Query 1 ATGGGTAAAGTTGGGTGGTCTGATTTACATGAAGATCTCATAGATTTGTTAGCTAATAAT 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 ATGGGTAAAGTTGGGTGGTCTGATTTACATGAAGATCTCATAGATTTGTTAGCCAATAAT 60 Query 61 TTATCTTCAAACATCAATCTCCTCCGTTTCCGTAGCATCTGTAAACCCTGGCGTTCCACG 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTATCTTCCAACATCAATCTCCTCCGTTTCCGTAGCATCTGTAAACCCTGGCGTTCCACG 120 Query 121 ATTGCGACCAAGAAGCGTCTCCATAACCACTTTGAACGTAACCTTCCTACTTTCAAGAAG 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTTGCGACCAAGAAGCGTCTCCATAACCACTTTGAACGTAACCTTCCTACTTTCAAGAAG 180 Query 181 ACAAAGACTGTTGTCTCTCCCACCACTTTCTTCCGTGTAACTCTCCCTTCTCCATGTCCT 240 | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 181 AAAAAGACTGTTGTCTCTCCCTCCACTTTCTTCCGTGTAACTCTCCCTTCTCCATGTCGT 240 Query 241 AACAAAGGGTGGCTGATTAAAAACAGACAAGTCTCTGAATCTAGTAAGAATAATCTCTTG 300 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 241 AACAAAGGATGGCTGATTAAAAACAGACAAGTCTCTGAATCTAGTAAAAATAATCTCTTG 300 Query 301 TGTCCTCTGTCTGGCAAGCCCATCACCCCTTCCGACAAAACCCTAGACCTTATGAAGCTC 360 | |||||| |||||||| |||| ||||||||||||||||||||||||||| ||||| || Sbjct 301 TCTCCTCTTTCTGGCAAAACCATAACCCCTTCCGACAAAACCCTAGACCTTTTGAAGGTC 360 Query 361 G-GTGTTTCGGAAATTCGTCAATCTTACAACTCTTCTGCGAATTCGGCTAGAGTTGTTTT 419 | ||||||| || ||||||||||||||||||| ||| ||| |||||| |||||||||||| Sbjct 361 GAGTGTTTCAGAGATTCGTCAATCTTACAACTATTC-GCGGATTCGGATAGAGTTGTTTT 419 Query 420 CCTAAACAATATGTTTTTCGTAGTTGACTTCAAAAACGAAATTTGGTGTTGCAAAAGCGG 479 |||| ||||| | ||||||||||||||||||||||||||||||||||||||||| || || Sbjct 420 CCTAGACAATGTCTTTTTCGTAGTTGACTTCAAAAACGAAATTTGGTGTTGCAAGAGTGG 479 Query 480 AGAAGAAAGTATACGTTGGACAAGAATAAACAATGAAGAAGCTGAAGGTTTTTTGGATAT 539 |||||||| || || |||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 480 AGAAGAAACTAGACATTGGACAAGAATCAACAATGAAGAAGCTAAAGGTTTTTTGGATAT 539 Query 540 TATACTTCACAAAGGAAAGGTCTATGCATTCGACTTAACCGGAGCAATTTGGTGGATTAG 599 |||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||| Sbjct 540 TATACTTCACAAAGGAAAAATCTATGCATTAGACTTAACAGGAGCAATTTGGTGGATTAG 599 Query 600 TTTATCTGAACTCAGCATATATCAATTCGGACCTTCAACTCCATTAGACTACTACGACAT 659 |||||||||||||||||||||||||| |||||||||||||||| | |||| |||||| || Sbjct 600 TTTATCTGAACTCAGCATATATCAATACGGACCTTCAACTCCAGTGGACTTCTACGAAAT 659 Query 660 TGATAATTGCAAAGAAAAGAGATTCGTCGAGTATTGTGGAGATCTCTGCGTTATTCATCG 719 |||||||||||||||||||||| |||| |||||||||||||| || |||||| ||||||| Sbjct 660 TGATAATTGCAAAGAAAAGAGACTCGTGGAGTATTGTGGAGAACTATGCGTTGTTCATCG 719 Query 720 TTTCTGTAAGAAATTTCGCGTAAATCGAGTTCTTAGAGAGAGAACCGTTGGTTTTAAGGT 779 |||| |||||||||| ||||||| |||||||||| |||||||||||| |||||||||| Sbjct 720 ATTCTATAAGAAATTTTGCGTAAAGCGAGTTCTTACCGAGAGAACCGTTTGTTTTAAGGT 779 Query 780 TTACAAGATGGACAAGAATTTGGTAAAATGGGTTGAGGTCAGTTCCTTGGGAGACAAGGC 839 ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 780 TTATAAGATGGACAAGAATTTGGTAGAATGGGTTGAGGTCAGTTCCTTGGGAGACAAGGC 839 Query 840 ACTCATTGTGGCTACGGATAGTTGTTTTTTGGTCTTAGCCTCCGAGTACTATGGATGTTT 899 |||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 840 ACTCATTGTGGCGACGGACAATTGTTTTTTGGTCTTAGCCTCCGAGTACTATGGATGTTT 899 Query 900 GGAGAATGCTATCTACTTCAATGACGGGGAAGATGTTAGTGTGTTTAAGCTTGATGATGG 959 |||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| | Sbjct 900 GGAGAATGCTATTTACTTCAACGACCGGGAAGATGTTAGTGTGTTTAAGCTTGATGATTG 959 Query 960 TAGCATCATTAACAAGCAGATTGATTCTTCTTCTTCATCTTCTCATGAGAGTTGTTTCCA 1019 |||||| |||| |||||| ||| ||||||||||||||||||||||| | ||||||||||| Sbjct 960 TAGCATTATTACCAAGCAAATTAATTCTTCTTCTTCATCTTCTCATCAAAGTTGTTTCCA 1019 Query 1020 GATGTTCTCTGCTCCTTTTCTCTGA 1044 |||||| ||| || ||||| ||||| Sbjct 1020 GATGTTTTCTACTTCTTTTTTCTGA 1044 > AT2G26160.1 | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr2:11137978-11139451 REVERSE LENGTH=1474 Length=1474 Score = 337 bits (182), Expect = 2e-91 Identities = 418/527 (79%), Gaps = 36/527 (7%) Strand=Plus/Plus Query 407 CTAGAGTTGTTTTCCTAAACAATATGTTTTTCGTAGT-TGACTTCAAAAACGAAATTTGG 465 ||||||||||||||||| ||||| || |||||| ||| ||| | || |||| ||| Sbjct 449 CTAGAGTTGTTTTCCTAGACAATCTGATTTTCGCAGTCGGAC-AGGATGACAAAATCTGG 507 Query 466 TGTTGCAAAAGCGGAGAAGAAAGTA-TACG--T-TGGACAAGAATAAACAATGAAGAAGC 521 || ||||| || |||||||| |||| || | | ||||||| ||| || || | ||| Sbjct 508 TGCTGCAAGAGTGGAGAAGAGAGTAGTA-GAATATGGACAAAAATCAA-AA--ACCAAGT 563 Query 522 TGAAGGTTTTTTGGATATTATACTTCACAAAGGA-AAGGTCTATGCATTCGACTTAACCG 580 ||||| ||| ||||| ||||||||||| |||||| || |||||||| || ||| |||||| Sbjct 564 TGAAGATTTCTTGGACATTATACTTCATAAAGGACAA-GTCTATGCCTTAGACCTAACCG 622 Query 581 GAGCAATTTGGTGGATTAGTTTATCTGAACTCAGCAT-ATATCAATTCGGACCTTCAACT 639 | ||||||||||||||||||||||| |||||| | | ||||||| |||||||| | Sbjct 623 GCGCAATTTGGTGGATTAGTTTATCACCGCTCAGCCTCCT-TCAATTCACACCTTCAATT 681 Query 640 CCATTAGACTACTAC-GACATTGATAATTGCAAAGAAAAGAGATTCGTCGAGTATTGTGG 698 ||| | |||||| || || | ||||| |||| | | |||||| |||| ||||||||||| Sbjct 682 CCAATGGACTACGACGGATA-TGATAGTTGC--A-ACAAGAGACTCGTTGAGTATTGTGG 737 Query 699 AGATCTCTGCGTTATTCATC--GTT-TCTGT-AAGAAATTTCGCGTAAAT-CG-AGTTCT 752 |||||| ||| ||||||||| || || | |||||| || || || || || | Sbjct 738 AGATCTATGCATTATTCATCAACTTCGCT-TAAAGAAA----GCTTATATCCGAAGGAGT 792 Query 753 TAGAGAGAGAACCGTTGGTTTTAAGGTTTACAAGATGGACAAGAATTTGGTAAAATGGGT 812 | | || | || ||||||||||||||||| ||||||||| || || ||| ||||||||| Sbjct 793 CA-A-AG-G-ACAGTTGGTTTTAAGGTTTATAAGATGGACGAGTATGTGGCAAAATGGGT 848 Query 813 TGAGGTCAGTTCCTTGGGAGACAAGGCACTCATTGTGGCTACGGATAGTTGTTTTT-TGG 871 |||||| || ||||||||||||||||||||||||||||||| ||| ||||||||| || Sbjct 849 TGAGGTTAGGTCCTTGGGAGACAAGGCACTCATTGTGGCTAGGGACAGTTGTTTTACTGT 908 Query 872 TCTTAGCCTCCGAGTACTATGGATGTTTGGAGAATGCTATCTACTTC 918 | | ||||||||||||| ||||||||||| | ||| ||||||||||| Sbjct 909 TGT-AGCCTCCGAGTACCATGGATGTTTGAACAATTCTATCTACTTC 954 Score = 200 bits (108), Expect = 2e-50 Identities = 248/313 (79%), Gaps = 19/313 (6%) Strand=Plus/Plus Query 80 TCCTCCGTTTCCGTAGCATCTGTAAACCCTGGCGTTCCACGATTGCGACCA-AGAAGCGT 138 |||||||| | |||||||||||||||||||||||||| || ||||| || |||| | Sbjct 80 TCCTCCGTGTACGTAGCATCTGTAAACCCTGGCGTTCGGCGGCTGCGA-CACCGAAGAG- 137 Query 139 CTCCATAACCACTTTG-AACGTAACCTTCCTACTTTCAAGAAGACAAAGACTGTTGTCTC 197 || | || || ||| | ||||||| | ||||| || | |||||||| |||| Sbjct 138 CT---T--TCA--ATGCAACCT-TCCTTCCT-CCAACAAGATGATAGAGACTGTTCTCTC 188 Query 198 TCCCACCACTTTCTTCCGTGTAACTCTCCCTTCTCCATGTCCTAACAAAGGGTGGCTGAT 257 ||||||||||||||||||||||||| ||||||| ||||| || ||||||| |||||||| Sbjct 189 TCCCACCACTTTCTTCCGTGTAACTGGCCCTTCTTCATGTTCTTACAAAGGATGGCTGAT 248 Query 258 TAAAAACAGACAAGTCTCTGAATCTAGTAAGAATAATCTCTTGTGTCCTCTGTCTGGCAA 317 | || || ||||||||||||||| ||||||| ||||||||||| |||| | | | || | Sbjct 249 CAGAACCAAACAAGTCTCTGAATCCAGTAAGATTAATCTCTTGTCTCCTTTCTTTCGCCA 308 Query 318 GC-CCATCACCCCTTC-CGACAAAACCCTAGACCTTATGAAGCTCG-GTGTTTCGGAAAT 374 || || | |||||||| | ||||| ||||||||||| |||| | | | ||||| || || Sbjct 309 GCTCC-TAACCCCTTCACAACAAA-CCCTAGACCTTTTGAAATTTGAG-GTTTCAGAGAT 365 Query 375 TCGTCAATCTTAC 387 ||| ||||||||| Sbjct 366 TCGCCAATCTTAC 378 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51188595793 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5