BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473798
Length=1991
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44100.1 | Symbols: AAP5 | amino acid permease 5 | chr1:1676... 2455 0.0
> AT1G44100.1 | Symbols: AAP5 | amino acid permease 5 | chr1:16764405-16767685
REVERSE LENGTH=2151
Length=2151
Score = 2455 bits (1329), Expect = 0.0
Identities = 1575/1693 (93%), Gaps = 20/1693 (1%)
Strand=Plus/Plus
Query 263 CTTCTTCTGGTC-TaaaaaaaTTCAAGATCTAAACGAGAAGaa-aaaaaaCAAGTAAAAA 320
|||||||||||| ||||||||||||||||||| ||||||| || | ||||||||| ||||
Sbjct 324 CTTCTTCTGGTCTTAAAAAAATTCAAGATCTATACGAGAA-AACACAAAACAAGT-AAAA 381
Query 321 CTTTTTCAACCGTTTTTCCTGTCGGTAACGTTTGGATTTTTATT-GTAAATTTTGGTCTT 379
|||||||||||||||||||||||||||| ||||||||| || || |||||||||||||||
Sbjct 382 CTTTTTCAACCGTTTTTCCTGTCGGTAAAGTTTGGATTCTTCTTAGTAAATTTTGGTCTT 441
Query 380 -TTGTC-AAGAAGAAGAAGAAGATGGTCGTTAAGAATGTTCAAGATTTGGATGTTCTTCC 437
||||| | || |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 442 ATTGTCGACCAA-AAGAAGAAGATGGTCGTTCAGAATGTTCAAGATTTGGATGTTCTTCC 500
Query 438 GAGGA-ATAGCTCCGATTTATTCGATGACGATGGTCGTCCCAAGCGAACCGGGACGGTGT 496
|| | ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 501 GA-AACATAGCTCGGATTCATTCGATGATGATGGTCGTCCCAAGCGAACCGGGACGGTGT 559
Query 497 GGACAGCAAGTGCACACATAATAACAGCAGTAATTGGGTCAGGAGTGTTGTCATTGGCAT 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 GGACAGCAAGTGCACACATAATAACAGCAGTAATTGGGTCAGGAGTGTTGTCATTGGCAT 619
Query 557 GGGCCGTTGCTCAGATTGGTTGGATTGGTGGTCCAGTGACTATGTTACTCTTTTCTTTCG 616
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 620 GGGCCGTTGCTCAGATTGGTTGGATTGGTGGTCCAGTGGCTATGTTACTCTTTTCTTTCG 679
Query 617 TTACTTATTACACATCTACCCTCCTCTGTTCTTGTTACCGTTCCGGTGACTCTGTTTCCG 676
|||||| ||||||||||||||| ||||||||||||||||| || |||||||||||| |||
Sbjct 680 TTACTTTTTACACATCTACCCTTCTCTGTTCTTGTTACCGATCTGGTGACTCTGTTACCG 739
Query 677 GCAAAAGAAACTACACTTACATGGACGCTATTCACGCCAACCTCGGTGGCATTAAGGTGA 736
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 740 GCAAAAGAAACTACACTTACATGGACGCTATTCACTCCAACCTCGGTGGGATTAAGGTGA 799
Query 737 AATTATGTGGAGTTGTGCAATATCTTAATCTCTTTGGTACTGCAATTGGATACACTATTG 796
|| |||||||||||||||||||| ||||||| |||||||| ||||||||||| || ||||
Sbjct 800 AAGTATGTGGAGTTGTGCAATATGTTAATCTATTTGGTACAGCAATTGGATATACAATTG 859
Query 797 CATCAGCTATAAGTTTGGTAGCAATCCAAAGGACAAGTTGCCAACAGATGAATGGAGGAA 856
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 860 CATCAGCTATAAGTTTGGTAGCAATCCAAAGGACAAGTTGCCAACAGATGAATGGACCAA 919
Query 857 ATCATCCTTGTCATGTGAATGGAAATGTTTACATGATTGCATTCGGTGTTGTACAAATCA 916
|| ||||||||||||| ||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 920 ATGATCCTTGTCATGTTAATGGAAATGTTTACATGATTGCGTTTGGTATTGTACAAATCA 979
Query 917 TATTCTCTCAGATTCCGGATTTTGATCAGTTATGGTGGCTTTCCATTGTCGCTGCGGTCA 976
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 TATTCTCTCAGATTCCTGATTTTGATCAGTTATGGTGGCTTTCCATTGTCGCTGCGGTCA 1039
Query 977 TGTCTTTTGGTTATTC-GACCATCGGGCTTGGCCTGGGTGTCTCTAGAGTGGTAGAGAAC 1035
||||||||| |||||| | |||| || |||||||| |||||||||| |||||||||||||
Sbjct 1040 TGTCTTTTGCTTATTCTG-CCATTGGACTTGGCCTTGGTGTCTCTAAAGTGGTAGAGAAC 1098
Query 1036 AAAGAAATTAAAGGTACTCTCACTGGAGTCACTGTTGGGACAGTGACACCGAGTGGGACA 1095
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1099 AAAGAAATTAAAGGTAGTCTCACTGGAGTCACTGTTGGGACAGTGACACTGAGTGGGACA 1158
Query 1096 GTGACACCGACGCAGAAAATTTGGAGAACATTTCAGTCTCTTGGAAACATTGCGTTTGCT 1155
|||||| || |||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1159 GTGACATCGTCGCAGAAAATATGGAGAACATTTCAGTCTCTTGGCAACATTGCGTTTGCG 1218
Query 1156 TACTCTTACTCGATGATTCTCATTGAAATTCAGGACACCGTAAAATCACCGCCAGCAGAA 1215
||||||||||||||||||||||| |||||||||||||| || ||||||||||| || |||
Sbjct 1219 TACTCTTACTCGATGATTCTCATCGAAATTCAGGACACGGTGAAATCACCGCCTGCCGAA 1278
Query 1216 GTAAACACTATGAGAAAAGCGACTTTTGTAAGTGTGGCAGTGACAACAATCTTCTACATG 1275
|||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1279 GTAAACACGATGAGAAAAGCGACTTTTGTAAGTGTGGCAGTGACTACAGTCTTCTACATG 1338
Query 1276 CTCTGTGGCTGTGTAGGGTATGCAGCATTTGGGGATACCGCACCCGGAAATCTCCTCGCT 1335
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1339 CTATGTGGCTGTGTAGGGTATGCAGCATTTGGGGATAACGCACCCGGAAATCTCCTCGCT 1398
Query 1336 AATGGAGGGTTCAGAAACCCATTTTGGTTGCTTGACATTGCCAATCTCGCTATAGTGATC 1395
|||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1399 CATGGAGGGTTTAGAAACCCATATTGGTTGCTTGACATTGCTAATCTCGCTATAGTGATC 1458
Query 1396 CATCTAGTCGGAGCTTACCAAGTCTATTGCCAACCCCTCTTTGCCTTTGTCGAGAAGGAA 1455
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1459 CATCTAGTCGGTGCTTACCAAGTCTATTGCCAACCCCTCTTTGCCTTCGTCGAGAAGGAA 1518
Query 1456 GCCGCTAGGAGGTTTCCAGAGAGCAAATTTGTCACAAATGAGATCAAGATCCAACTCTTT 1515
||| |||||||||||||||||||| |||| |||||||| ||||||||||||||||||||
Sbjct 1519 GCCTCTAGGAGGTTTCCAGAGAGCGAATTCGTCACAAAAGAGATCAAGATCCAACTCTTC 1578
Query 1516 CCGGGGAAACCCTTCAACTTGAACCTCTTCAGGCTCGTATGGAGGACAATCTTCGTGATG 1575
|||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1579 CCGGGGAAGCCCTTTAACTTGAATCTCTTCAGGCTCGTATGGAGGACGTTCTTCGTGATG 1638
Query 1576 ACAACAACGTTGATCTCAATGTTAATGCCTTTCTTTAACGATGTTCTTGGTCTTTTGGGG 1635
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct 1639 ACAACAACGTTGATCTCAATGTTAATGCCTTTCTTTAACGATGTAGTCGGTCTCTTGGGG 1698
Query 1636 GCCATCGGTTTTTGGCCTTTAACGGTTTACTTCCCGGTGGAAATGTACATTGTACAGAAG 1695
||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||
Sbjct 1699 GCCATTGGTTTTTGGCCTTTAACGGTTTATTTCCCAGTGGAAATGTACATTGCACAGAAG 1758
Query 1696 AATGTTCCGAGATGGGGCACAAAGTGGGTTTGTCTACAAGTCTTAAGTCTGGCCTGTCTT 1755
|||||||||||||||||||||||||||||||||||||||||||| ||| || | ||||||
Sbjct 1759 AATGTTCCGAGATGGGGCACAAAGTGGGTTTGTCTACAAGTCTTGAGTGTGACATGTCTT 1818
Query 1756 TTTGTATCCGTAGCCGCGGCTGCAGGATCTGT-AGTTGGCATTGTTAGTGATCTCAAGAT 1814
||||| |||||||||||||| || |||||||| | ||||||||||||||||||||||| |
Sbjct 1819 TTTGTGTCCGTAGCCGCGGCCGCGGGATCTGTTA-TTGGCATTGTTAGTGATCTCAAGGT 1877
Query 1815 CTACAAACCTTTCCAGTCAGATTTCTAAGATCATACGG-AAAATTAAACTCCTACAAAAA 1873
|||||||||||||||||| || |||| ||||||||||| |||| ||||||||| | ||||
Sbjct 1878 CTACAAACCTTTCCAGTCTGAATTCTGAGATCATACGGGAAAAATAAACTCCTGCTAAAA 1937
Query 1874 GGCTTAAGATTAGAATTGAATGTTTTAATGTTATCTTTGTATTAGTGAAATTAACTTTGT 1933
|| |||||||||||||||||||||||||||| || ||||||||||| | ||||||||
Sbjct 1938 GGGTTAAGATTAGAATTGAATGTTTTAATGTCATATTTGTATTAGT----T-AACTTTGT 1992
Query 1934 GTAAGTGCTCAAT 1946
||||||| |||||
Sbjct 1993 GTAAGTGTTCAAT 2005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98644070925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5