BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473799
Length=1570
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44110.1 | Symbols: CYCA1;1 | Cyclin A1;1 | chr1:16774865-16... 2148 0.0
> AT1G44110.1 | Symbols: CYCA1;1 | Cyclin A1;1 | chr1:16774865-16777247
REVERSE LENGTH=1618
Length=1618
Score = 2148 bits (1163), Expect = 0.0
Identities = 1451/1585 (92%), Gaps = 39/1585 (2%)
Strand=Plus/Plus
Query 1 CATTAAAACTCAGTTTCCTTTTTCAGAGATTCTCACAG-AG----ATTTTACCCT---AA 52
||||||||||| ||||||||||||||||||||||| || || |||||||||| ||
Sbjct 1 CATTAAAACTCTGTTTCCTTTTTCAGAGATTCTCAGAGAAGATTCATTTTACCCTAAGAA 60
Query 53 AAAAGATGTCGAACATTCATCAGAATCGGCGATCTTCGTTTTCCTCGTCGACGAAATCCT 112
|||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
Sbjct 61 AAAAAATGTCGAACATTCTTCAGAATCGGCGATCTTCGTTTTCCTCTTCGACGAAATCTT 120
Query 113 CACTAGCAAAGCGTCAAGCACCATCTTCGTCGGAAAATTCAGTGAAACCTATGGCGGTGA 172
|| |||| |||||||||||||||||||| ||||| ||||| || |||| |||| ||| ||
Sbjct 121 CATTAGCGAAGCGTCAAGCACCATCTTCATCGGAGAATTCTGTTAAACTTATGCCGGCGA 180
Query 173 TGACGAAAAAACGAGCACCGTTAAGTAATATCACTAATCaaaaaaaT-GGCTCACGATTA 231
||||||| |||||||||||||||||||| || || |||| ||||||| | ||||||||||
Sbjct 181 TGACGAAGAAACGAGCACCGTTAAGTAACATTACCAATC-AAAAAATCGCCTCACGATTA 239
Query 232 CCAAATTCATCATTTGATTCGGTACATTGTTCTAACAAGTCTGCGAAATTGAAGTTAGCA 291
|||| || | |||||||||||||||||| |||||||| |||||||||||| |||||
Sbjct 240 -CAAA---AT--TCTGATTCGGTACATTGTTCAAACAAGTCAGCGAAATTGAAGATAGCA 293
Query 292 CCAACACCACCTGTTTGCGTAAATGCCGGTTTCTCGAGCAATGTTTTACCTCTGCAACAA 351
| || | ||||||||| |||||| ||||||| ||| | | ||||||||||
Sbjct 294 -C--CA--A-GTGTTTGCGTTAATGCCAGTTTCTCTAGC-A------A--TCTGCAACAA 338
Query 352 AGTGTAGTTCCTCACAAAGTTGCTTCCTCACCTAGCAAATCTGATGATGGATCAGTATCA 411
|| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 339 AGCATAGTTCCTCACAAAGTTGCTTCTTCACCTAGCAAATCTGATGATGGCTCAGTATCA 398
Query 412 ATGGACGAGACAATGTCTTCAAGTGATTCTTACAAGAGTCCTCAAGTTGAGTATATCGAT 471
||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 399 ATGGACGAGACTAGGTCTTCAAGTGATTCCTACAAGAGTCCTCAAGTTGAGTATATCGAA 458
Query 472 AATGACGAAGTTTCCGCTGTTGTTTCGATTGAAAGGAAAGCATTGAGTAATCTGTACATA 531
|| ||||| ||||| ||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 459 AACGACGACGTTTCGGCTGTTGTTTCGATTGAGAGGAAAGCTTTGAGTAATCTGTTCATA 518
Query 532 ACGCCGACTTCAGAAACAATTGGTAATTATTGTAGTAGAGATGTGCTGTCTGATATGAAG 591
||||||| |||||||||||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 519 ACGCCGAATTCAGAAACAATTGATAATTATTGTAGTAGAGATGTGTTATCTGATATGAAG 578
Query 592 AAAATGGATAAGAATCAGATTGTTAACATTGATAGTAACAATGCTGATCCTCAGCTTTGT 651
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 579 AAAATGGATAAGAATCAGATTGTTAACATTGATAGTAACAATGGTGATCCTCAGCTTTGT 638
Query 652 GCTACATTTGCTTGTGACATCTATAAGCATCTTTGTGCCTCCGAGGCTAAGAAGCGGCCT 711
||||| |||||||||||||| |||||||||||| |||| || |||||||||||||| |||
Sbjct 639 GCTACGTTTGCTTGTGACATTTATAAGCATCTTCGTGCTTCTGAGGCTAAGAAGCGACCT 698
Query 712 GCGGTTGATTATATGGAGAGAGTTCAGAAAGACGTGAATTCGAGTATGCGTGGAATCCTT 771
| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 699 GATGTTGATTACATGGAGAGAGTTCAGAAAGATGTGAATTCGAGTATGCGTGGAAT-CTT 757
Query 772 -GTTGATTGGCTTATTGAGGTGTCAGAAGAGTATAGGCTTGTACCTGAGACGTTGTATTT 830
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 758 AGTTGATTGGCTTATTGAGGTGTCTGAAGAGTATAGGCTTGTACCGGAGACGTTGTATTT 817
Query 831 GACAGTGAACTATATAGATAGGTATCTATCTGGGAATGTGATTAGTAGGCAGAAACTTCA 890
||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 818 GACTGTGAACTATATAGATAGGTATTTATCTGGGAATGTGATTAGTAGACAGAAACTTCA 877
Query 891 GTTGCTTGGGGTGGCTTGTATGATGATAGCAGCAAAATATGAAGAGATATGTGCTCCACA 950
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 878 GTTGCTTGGTGTGGCTTGTATGATGATAGCAGCGAAATATGAAGAGATATGTGCTCCACA 937
Query 951 AGTTGAGGAGTTCTGCTACATCACTGATAATACGTATCTCAAAGATGAGGTTCTTGATAT 1010
|||||||||||| || ||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 938 AGTTGAGGAGTTTTGTTACATTACTGATAATACATATCTCAAAGATGAAGTTCTTGATAT 997
Query 1011 GGAATCTGATGTTCTGAATTACTTGAAGTTTGAAATGACAGCACCGACAACGAAATGCTT 1070
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||
Sbjct 998 GGAATCTGATGTTCTGAATTACTTGAAGTTTGAAATGACTGCACCAACTACGAAATGTTT 1057
Query 1071 TCTAAGACGCTTTGTTCGAGCTGCCCATGGGGTTCATGAGGCTCCATTGATGCAACTAGA 1130
|||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||
Sbjct 1058 TCTAAGACGCTTTGTTCGAGCTGCTCATGGTGTTCATGAAGCTCCATTGATGCAGCTAGA 1117
Query 1131 ATGTATGGCTAACTACATTGCGGAATTATCGCTTCTAGAGTACACTATGCTCTCTCATTC 1190
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1118 ATGTATGGCTAACTACATTGCGGAATTATCGCTACTAGAGTACACTATGCTCTCTCATTC 1177
Query 1191 ACCTTCACTAGTGGCTGCTTCCGCCATTTTCTTGGCTAAGTACATTCTAGACCCAACAAG 1250
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 TCCTTCACTAGTAGCTGCTTCCGCCATTTTCTTGGCTAAGTACATTCTAGACCCAACAAG 1237
Query 1251 AAGACCATGGAACTCGACTTTGCAACACTATACGCAATATAAAGCGATGGAGTTGAGAGG 1310
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 ACGACCATGGAACTCGACGTTGCAACACTATACGCAATATAAAGCGATGGAGTTGAGAGG 1297
Query 1311 ATGTGTGAAGGATCTTCAAAGATTGTGTAGTACCGCTCACGGCTCTACTCTACCTGCTGT 1370
||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct 1298 ATGTGTGAAGGATCTTCAACGATTGTGTAGTACTGCTCACGGCTCTACACTACCTGCTGT 1357
Query 1371 GAGAGAGAAATACAGTCAACACAAATACAAGTTTGTGGCAAAGAAGTTTTGTCCATCAAT 1430
|||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1358 TAGAGAGAAGTATAGTCAACACAAATACAAGTTTGTGGCGAAGAAGTTTTGTCCATCCGT 1417
Query 1431 AATCCCACAAGAGTTCTTCAACAACAGCTAAA--TCTTTTAATTTAACTTAGTTCCAATG 1488
|||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||
Sbjct 1418 AATCCCACAAGAGTTCTTCAACAACAGCTAAAAATCCTTTAATTTAACTTTGTTCCAATG 1477
Query 1489 ATGT-T-GGATTGA-TTGTTTGATTGTACATGATTTTGCTGTTGTTGGTCTATTTATAAA 1545
||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 TTGTGTTGGATTTAATTGTTTGATTGTACATGATTTTGCTGTTGTTGGTCTATTTATAAA 1537
Query 1546 AATTAGCTATCTACGATCTCACTTT 1570
| |||||||||||||||||||||||
Sbjct 1538 A-TTAGCTATCTACGATCTCACTTT 1561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77509641480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5