BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473802
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44160.1 | Symbols: | HSP40/DnaJ peptide-binding protein | ... 1927 0.0
AT1G44170.1 | Symbols: ALDH3H1, ALDH4 | aldehyde dehydrogenase ... 60.2 5e-08
> AT1G44160.1 | Symbols: | HSP40/DnaJ peptide-binding protein
| chr1:16794829-16796450 FORWARD LENGTH=1451
Length=1451
Score = 1927 bits (1043), Expect = 0.0
Identities = 1306/1425 (92%), Gaps = 50/1425 (4%)
Strand=Plus/Plus
Query 1 TAGATGAGAGCGTTTCTTATCTTGATTCTTAGATCTGTGCTCCGATCCTATCTGTTTCCG 60
|||||||||||||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 25 TAGATGAGAGCGTTTCTTATCTTGATTCTTTGATCTGTG-T----TCCTATCTGTTTCCG 79
Query 61 TCAATGGCAAAAGATTTGGTCTAAAAAAGGAAGTTACGAAAC-AGAAAACGTTTCAATTC 119
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 80 TCAATGGCAAAAGATTTGGTCTAAAAAAGGAAGTTACGAAACAAAAAAACGTTTCAATTC 139
Query 120 TCATTCATCTCCCAAAAACGTAtctctctctctctctctttctctttctctatctcCGCC 179
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 140 TCATTCATCTCTCAAAAACGTATCTCTCTGACTCTCTCTTTCTCTTTCTCTATCTCCGCC 199
Query 180 GTGAATGGCAACACAAGGGATGGCTCAGCCGTCGGCGAAGAAAAGAAGCTTCCTCCTCCG 239
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 200 GTGAATGGCAACACAAGGGATGGCTCAGCCTTCGGCGAAGAAAAGAAGCTTCCTCCTCCG 259
Query 240 TGATATCTTCAAACTTTGCCGATCAATCTCAAGGGTTTTTCCTCGTGAC-AAACCTAAAC 298
|||| |||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct 260 TGATCTCTTCAAACTTTGCCGATCAATCTCAAGGGTTTTGCCTCGTGACAAAACC-AAAC 318
Query 299 ATCATCATAAGGCT--A-A--ACAC----GAAACCAAACGTTTTGATGAAGAACCTAAAC 349
|||||||||||||| | | |||| |||||||||||| |||||||||||| |||||
Sbjct 319 ATCATCATAAGGCTAAACACGACACAAAGGAAACCAAACGTCTTGATGAAGAACATAAAC 378
Query 350 GGAATAAACCAAACGCCTTCGATTTTCGGGTTA-GTTTTCGATGTTGTCAAAATAATAAT 408
|||||| ||||||||||||||| ||||||| | | ||| | || ||||||||||
Sbjct 379 GGAATACACCAAACGCCTTCGAGTTTCGGGAAACGAAAGGGAT-TGGTAAAAATAATAAG 437
Query 409 GTGGAAGGTGTCAGTCTTTGTAAGGTTCGTAGTTATAGATTTGACAACACCAATACCAAT 468
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 GTGGAAGGTGTGAGTCTTTGTAAGGTTCGTAGTTATAGATTTGACAACACCAATACCAAT 497
Query 469 TTCGTGGGGAGCAAGAAATCTCTTTCAAGAAGTTGTAGCCAGAACACAGCCACAGCCACC 528
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 498 TTCGTGGGGAGCAAGAAATCTCTTTCAAGAAGTTGTAGCCAGAACACAGCCAC-G----- 551
Query 529 GGGGCCACGACGAATCCGACATTCCGGAGTTTATCGTTTATAGGGAGGAGCAAAAGCAGC 588
| | || ||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 552 GCGACCTCGACGAATCCGACGTTGCGGAGTTTATCGTTTATAGGGAGGAGCAAAAGCAGT 611
Query 589 AGCAATAGGATGACGGAATCCGGTGGATTTATGCCGACACTTATGAGATCGACAACCACG 648
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 612 AGCAACAGGATGACGGAATCTGGTGGATTTATGCCTACACTTATGAGATCGACAACCACG 671
Query 649 GTTCCAAGAAGCTTTGCCAACCCGATTTTGTATTCGAGTTCATCGGCCAAAGTGGCTAAA 708
||||||||||||||||| || |||||||||||||||||||| || || ||||||||||||
Sbjct 672 GTTCCAAGAAGCTTTGCAAATCCGATTTTGTATTCGAGTTCCTCTGCTAAAGTGGCTAAA 731
Query 709 CCGTCTCCAACAGAGAAGAAACTACGCTGTACGCTCGAGGAGCTATGTAACGGATGTACC 768
|| |||||||| |||||||||||| | || || ||||| |||||||| ||||||||||||
Sbjct 732 CCTTCTCCAACGGAGAAGAAACTAAGATGCACTCTCGAAGAGCTATGCAACGGATGTACC 791
Query 769 AAGAAGATCAAGATCACA-AGAGATGTTATTACTAGCTCAGGGCAAATGTGCGAGGAGGA 827
|||||||||||||||| | ||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 792 AAGAAGATCAAGATCA-AGAGAGATGTTATTACTAGCTTAGGGGAAAAGTGCGAGGAGGA 850
Query 828 AGAGACGGTGGAAATAAAAGTGAAACCGGGATGGAAAGGAGGGACGAAAGTAACATTTGA 887
||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 851 AGAGATGGTGGAAATAAAAGTTAAACCGGGATGGAAAGGAGGTACGAAAGTAACATTCGA 910
Query 888 AGGCAAAGGAAACGAAGCAATGGGGAGTGTACCGGCTGATTTGACATTCTTGATTGTTGA 947
|||||||||||||||||||||| | ||||||||||| |||||||||||| ||||||| ||
Sbjct 911 AGGCAAAGGAAACGAAGCAATGAGAAGTGTACCGGCAGATTTGACATTCGTGATTGTCGA 970
Query 948 GAAAGAGCATGAGGTGTTCAAAAGAGAAGGAGATGACCTCGAAATGGCGGTGGAAGTCTC 1007
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 971 GAAAGAGCATGAAGTGTTTAAAAGAGAAGGAGATGACCTCGAAATGGCGGTGGAAGTCTC 1030
Query 1008 TCTACTCGAAGCTTTAACGGGATGCGAGCTCTCTGTTGCTTTACTTGATGGTGACAATAT 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 TCTACTCGAAGCTTTAACGGGATGCGAGCTCTCTGTTGCTTTACTTGATGGTGACAATAT 1090
Query 1068 GAGTTTGAGGATAGAAGATGTTATTCACCCTGGATATGTTACAGTGGTTCAAGGCAAAGG 1127
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1091 GAGGTTGAGGATAGAAGATGTTATTCACCCTGGATATGTTACAGTGGTTCAAGGAAAAGG 1150
Query 1128 AATGCCAAATCTAAAGGAGAAAGGGAAGAGAGGAGATTTGAGAGTTCGGTTTCGGACTAA 1187
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 AATGCCAAATCTTAAGGAGAAAGGGAAGAGAGGAGATTTGAGAGTTCGGTTTCGGACTAA 1210
Query 1188 GTTCCCGCAACATCTTACAGATGAACAAAGGGCAGAGATTCATAGCATTCTTCAAGTCTC 1247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1211 GTTCCCGCAACATCTTACAGATGAACAAAGGGCAGAGATTCATAGCATTCTTCAAGACTC 1270
Query 1248 TTCTTGATTTGTTTGCTTA-AGACTTTCTTTCCCTTTATAGGGGAGCTTTTACAACATGG 1306
||||||||||||| ||| | ||| |||||||||| ||||||||||||||| |||||||||
Sbjct 1271 TTCTTGATTTGTT-GCT-ACAGATTTTCTTTCCCATTATAGGGGAGCTTTAACAACATGG 1328
Query 1307 TTTAGATGAAAA---TCCAAAGAGATTTTTACTCTTTTGT----------------AAAC 1347
||||||| |||| || ||||||||| |||||||||||| ||||
Sbjct 1329 TTTAGATAAAAAAAATC-AAAGAGATTCTTACTCTTTTGTGTCTTCTTTGTTTTGTAAAC 1387
Query 1348 AACCAAGTTGAAATGAAGAAACCGGTTTCCATAATCAACCGAAAA 1392
|||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1388 AACCAAGTTGGAATGAAGAAACCGGTTTCCATAATCAACCGAAAA 1432
> AT1G44170.1 | Symbols: ALDH3H1, ALDH4 | aldehyde dehydrogenase
3H1 | chr1:16796400-16800321 REVERSE LENGTH=1683
Length=1683
Score = 60.2 bits (32), Expect = 5e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Minus
Query 1361 TGAAGAAACCGGTTTCCATAATCAACCGAAAA 1392
||||||||||||||||||||||||||||||||
Sbjct 1683 TGAAGAAACCGGTTTCCATAATCAACCGAAAA 1652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68573944470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5