BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473805
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44170.1 | Symbols: ALDH3H1, ALDH4 | aldehyde dehydrogenase ... 1794 0.0
AT1G44160.1 | Symbols: | HSP40/DnaJ peptide-binding protein | ... 80.5 5e-14
> AT1G44170.1 | Symbols: ALDH3H1, ALDH4 | aldehyde dehydrogenase
3H1 | chr1:16796400-16800321 REVERSE LENGTH=1683
Length=1683
Score = 1794 bits (971), Expect = 0.0
Identities = 1165/1256 (93%), Gaps = 23/1256 (2%)
Strand=Plus/Plus
Query 426 GTATCTTTACTGAGAAACTCTATCAAGTTAGCTCTTAAGCAGCTAAAGAACTGGATGGCG 485
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 278 GTATCTCTACTGAGAAACTCTATCAAGTTGGCTCTTAAGCAGCTAAAGAACTGGATGGCT 337
Query 486 CCGGAGAAGGCCAAA-ACTTCTCTAACAACGTTTCCTGCATCGGCCGAGATTGTGTCTGA 544
|||||||||| |||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 338 CCGGAGAAGG-CAAAGACTTCTCTAACAACGTTTCCTGCATCCGCGGAGATTGTGTCTGA 396
Query 545 GCCTCTTGGTGTTGTGTTAGTTATCTCGGCTTGGAACTATCCCTTCCTGTTGTCTATTGA 604
|||||||||||||||| |||| |||||||||||||||||||| || ||||||||||||||
Sbjct 397 GCCTCTTGGTGTTGTGCTAGTGATCTCGGCTTGGAACTATCCTTTTCTGTTGTCTATTGA 456
Query 605 TCCTGTTATTGGTGCGATTTCTGCTGGGAATGCTGTTGTCTTGAAGCCATCGGAATTGGC 664
||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 457 TCCTGTTATTGGTGCAATTTCTGCTGGGAATGCTGTTGTTTTAAAGCCATCAGAATTGGC 516
Query 665 TCCAGCTTCGTCTGCTCTGCTTGCGAAGTTACTGGAACAGTATCTTGATTCTTCTGTGGT 724
|||||||||||| |||||||| | |||||||||||||||||||||||| |||||| |||
Sbjct 517 TCCAGCTTCGTCAGCTCTGCTCACTAAGTTACTGGAACAGTATCTTGATCCTTCTGCGGT 576
Query 725 GCGAGTTGTCGAAGGAGCTGTTACTGAAACAACTGCTCTGCTGGAGCAGAAGTGGGACAA 784
|||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 577 GCGAGTTGTCGAAGGAGCTGTTACCGAAACAAGTGCTCTGCTAGAGCAGAAGTGGGACAA 636
Query 785 GATATTCTACACAGGTAGTTCAAAAATTGGGCGTGTCATAATGGCGGCAGCTGCGAAGCA 844
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 637 GATATTCTACACAGGTAGTTCAAAAATCGGACGTGTCATAATGGCGGCAGCTGCGAAGCA 696
Query 845 TCTTACACCGGTTGTTCTGGAGCTTGGAGGAAAATCGCCTGTTGTTGTAGACTCGGATAC 904
||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 697 TCTCACACCGGTTGTTCTAGAGCTTGGAGGAAAATCTCCTGTCGTTGTAGACTCGGATAC 756
Query 905 CGATTTGAAAGTTACTGTGAGGCGGATAATCGCAGGCAAATGGGGTTGCAACAACGGACA 964
||||||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||
Sbjct 757 CGATTTGAAAGTTACCGTCAGGCGGATAATCGTAGGCAAATGGGGTTGTAACAACGGACA 816
Query 965 GGCGTGCATTTCGCCAGACTATATCTTGACGACAAAAGAATATGCTCCAAAAGTGATTGA 1024
||||||| ||||||| |||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 817 GGCGTGCGTTTCGCCGGACTATATCTTGACGACAAAAGAATATGCTCCTAAATTGATTGA 876
Query 1025 TGCCATGAAGAAAGAATTGGAGACGTTTTATGGGAAGAACCCTATGGAGTCTAAAGATAT 1084
|||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 877 TGCCATGAAGCTTGAATTGGAGAAATTTTATGGGAAGAACCCTATAGAGTCGAAAGATAT 936
Query 1085 GTCACGTATCGTAAACTCGACTCACTTTGATCGCTTGTCTAAGCTGTTAGATGAGAAGGA 1144
|||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||
Sbjct 937 GTCACGTATCGTAAACTCGAATCACTTTGATCGCTTGTCTAAGTTGTTAGACGAGAAGGA 996
Query 1145 AGTTTCTGACAAAATCGTCTACGGTGGTGAAAAGGACAAAGAAAATC-TGAAAATCGCTC 1203
||||||||||||||| ||||| |||||||||||||||| |||||| | ||||||| ||||
Sbjct 997 AGTTTCTGACAAAATTGTCTATGGTGGTGAAAAGGACAGAGAAAA-CTTGAAAATTGCTC 1055
Query 1204 CAACAATCTTGCTCGATGTACCATTAGATTCTCTGATCATGAGTGAAGAAAATATTTGGC 1263
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1056 CGACAATCTTGCTCGATGTACCATTAGATTCTCTGATCATGAGTGAAGAAA-TATTTGGC 1114
Query 1264 CCTCTCCTTCCAAT--TC----T---CA-C--G-A-GAGT--TTTGATATGATTCGCTCT 1307
|||||||||||||| || | || | | | ||| ||||| ||||||| |||
Sbjct 1115 CCTCTCCTTCCAATCCTCACGCTTAACAACTTGGAAGAGAGCTTTGACGTGATTCGTTCT 1174
Query 1308 CGACCTAAGCCACTTGCTGCATACTTGTTTACTCATAACAAGAAGCTGAAAGAGAGATTT 1367
||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||
Sbjct 1175 CGACCTAAGCCACTTGCGGCATACTTGTTTACACATAACAAGAAGTTGAAAGAGAGATTC 1234
Query 1368 GCAACGACAGTCTCCGCTGGAGGCATAGTGGTCAATGACATAGCTGTTCATCTTGCACTT 1427
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1235 GCAGCGACAGTCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCATCTTGCACTT 1294
Query 1428 CACACATTGCCATTCGGAGGAGTTGGCGAAAGTGGAATGGGTGCTTACCATGGTAAATTC 1487
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1295 CACACATTGCCATTCGGAGGAGTTGGTGAAAGTGGAATGGGTGCTTACCATGGTAAATTC 1354
Query 1488 TCATTTGATGCTTTTAGTCACAAGAAGGCTGTTCTCTACAGAAGCCTTTTCGGTGATTCA 1547
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1355 TCATTTGATGCTTTTAGTCACAAGAAGGCGGTTCTCTACAGAAGCCTTTTCGGTGATTCA 1414
Query 1548 GCAGTCAGGTATCCGCCTTACTCGAGAGGAAAGCTTAGATTGTTAAAAGCCCTTGTCGAT 1607
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 GCCGTCAGGTATCCGCCATACTCGAGAGGAAAGCTTAGATTGTTAAAAGCCCTTGTCGAC 1474
Query 1608 AGCAATATATTCGATATATTCAAAGCTC-TTCTCGGTTTATCTTAAACGGTAAAAA 1662
||||||||||||||| ||||||||| || ||||||||||| |||||||||||||||
Sbjct 1475 AGCAATATATTCGATTTATTCAAAG-TCCTTCTCGGTTTAGCTTAAACGGTAAAAA 1529
Score = 97.1 bits (52), Expect = 5e-19
Identities = 57/59 (97%), Gaps = 1/59 (2%)
Strand=Plus/Plus
Query 1683 ATGAATATTGAAGTCGATAAATAAAAG-TTTTCGGTTGATTATGGAAACCGGTTTCTTC 1740
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1624 ATGAATATTGAAGTTGATAAATAAAAGATTTTCGGTTGATTATGGAAACCGGTTTCTTC 1682
> AT1G44160.1 | Symbols: | HSP40/DnaJ peptide-binding protein
| chr1:16794829-16796450 FORWARD LENGTH=1451
Length=1451
Score = 80.5 bits (43), Expect = 5e-14
Identities = 48/50 (96%), Gaps = 1/50 (2%)
Strand=Plus/Minus
Query 1692 GAAGTCGATAAATAAAAG-TTTTCGGTTGATTATGGAAACCGGTTTCTTC 1740
||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1451 GAAGTTGATAAATAAAAGATTTTCGGTTGATTATGGAAACCGGTTTCTTC 1402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86043734130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5