BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473807
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44191.1 | Symbols: | ECA1 gametogenesis related family pro... 1491 0.0
> AT1G44191.1 | Symbols: | ECA1 gametogenesis related family protein
| chr1:16813654-16814733 REVERSE LENGTH=1080
Length=1080
Score = 1491 bits (807), Expect = 0.0
Identities = 993/1081 (92%), Gaps = 20/1081 (2%)
Strand=Plus/Plus
Query 1 ATGAAGAGCCTCATTTTCCTCGTACCTCTCCTTTGTCTCATCATTTCACCAACCACAACG 60
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1 ATGAAGAGCCTCATCTTCCTCGTACCAATCCTTTGTCTCGTCATTTCACCAACCACAACG 60
Query 61 ATTGCAAGTTGGCCAAAACCTTCGGAAGTCTCCAAAGAGGACATGCTGATGAATACCGAC 120
|| || ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 61 ATCGCTAGTTGGCCAAAACCTTCGGAAGTTTCCAATGAGGACATGTTGATGAATACCGAA 120
Query 121 CACAACCATTACTTTGGTAATAAATTGAACTACGAAGATTCCAAAGTCTGGAAATGTACA 180
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 121 CACAACCATTACTTTGGTAATAAATTGAACTTCAAAGATTCCAAAGTCTGGAAATGTACA 180
Query 181 TACAACAACGGATCTGGAGCCGCCGTCTCTATTTCCTACCCTGCACCTCCACATCCTCCG 240
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 181 TACAACAACGGATCTGGAGCTGCCGTCTCTATTTCCTACCCTTCACCTCCACATCCGCCG 240
Query 241 TCACCAAAGCTACCAACTCCGTCGTCTCGGCCTCCTTCACCTCTATCTCCAAAAAAGTCT 300
|| || |||| |||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 241 TCTCCGAAGCCACCAACTCCGTCGTCTCGGCCTCCGTCACCTCTATCACCGAAAAAGTCT 300
Query 301 CCACCACCGCCTAAACCATCACCGCCGCCACGAACTCCCAAAAAGTCTCCACCACC---T 357
|||||| ||||||||||||||||||| |||||||| |||||||| || |||||||| |
Sbjct 301 CCACCATCGCCTAAACCATCACCGCCACCACGAACCCCCAAAAAATCCCCACCACCGCCT 360
Query 358 AAGCCATCATCGCCTCCACCAACT-CCCAAAAAGTCTCCACCACCGCCTAAACCATCATC 416
|| ||||||||||| ||||||| | |||||||||||||||||||| |||||||| |||||
Sbjct 361 AAACCATCATCGCCGCCACCAA-TACCCAAAAAGTCTCCACCACCTCCTAAACCCTCATC 419
Query 417 GCCGCCACCAACTCCCAAAAAGTCTCCACCATCGCCTAAACCATCATCGCCGCCACCAAG 476
|||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 420 GCCGCCACCAACCCCCAAAAAGTCTCCACCACCGCCTAAACCATCATCCCCGCCACCAAG 479
Query 477 TCCCAAAAAGTCTCCGCCACCTCCTAAACCATCTCCGTCTCCTCCTAAACCATCTACGCC 536
||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| || ||
Sbjct 480 TCCCAAAAAGTCTCCACCACCTCCTAAACCATCCCCGTCTCCTCCAAAACCATCAACACC 539
Query 537 TCCACCAACTCCTAAGAAGTCTCCGCCCTCTCCT---AAACCATCATCACCACCACCAAG 593
||||||||| |||||||||||||| ||||||||| ||||| || ||||| ||||||||
Sbjct 540 TCCACCAACACCTAAGAAGTCTCCTCCCTCTCCTCCCAAACCCTCGTCACCGCCACCAAG 599
Query 594 CCCCAAAAAGTCTCCCCCGCCTCCTAAACCATCT--A---------AA-CCATCATCACC 641
|| ||||| ||||| |||||||||||||||||| | || |||||| | ||
Sbjct 600 TCCTAAAAAATCTCCACCGCCTCCTAAACCATCTCCATCTCCTCCTAAACCATCAACGCC 659
Query 642 GCCACCAACTCCTAAGAAGTCTCCGCCACCTCCCAAACCATCTCCGCCACCTCCTAAACC 701
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 660 ACCACCAACTCCTAAGAAGTCTCCGCCACCTCCCAAACCATCTCAGCCACCTCCTAAACC 719
Query 702 ATCTCCTCCACGTCGTAAACCATCTCCGCCGACTCCTAAACCATCAACAACTCCACCATC 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATCTCCTCCACGTCGTAAACCATCTCCGCCGACTCCTAAACCATCAACAACTCCACCATC 779
Query 762 TCCAAAAATTTCACCTCCGCGTCCAACTCCCAAGAAGTCTCCACCACCGCCACCAACTCC 821
||| ||| |||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 780 TCCTAAACCATCACCTCCGCGTCCAACTCCCAAGAAGTCTCCACCACCACCAACAACTCC 839
Query 822 GGCACATCGATATCAAAATCCGTGGGTGCATTTCGCGAGCTGCATTAGCGAATTTGGACC 881
| | | | | ||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 840 GTCGCCTAGTTATCAGGATCCGTGGGTGCATTTCGCGAACTGCATTAGCGAATTTGGACC 899
Query 882 GTCGGCAATATGTAAGCAACAGATGGAGGTAAGTTACTACAGAAGAGGGTTTCTTGTTAG 941
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 900 GTCGGCAATATGTAAGCAACAGATGGAAGTAAGTTACTACAGAAGAGGGTTTCTTGTTAG 959
Query 942 TGACTATTGCTGCAACCTTATTGTCAACATGAGACATGAATGTACCGATGTCATTTTGGG 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGACTATTGCTGCAACCTTATTGTCAACATGAGACATGAATGTACCGATGTCATTTTGGG 1019
Query 1002 CTTCTTCACCGATCCTTTCTTCGTTCCTCTTATTCGTTACACTTGTCATGTTAAGTATTA 1061
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1020 CTTCTTCACCGATCCTTTCTTCGTTCCACTTATTCGTTACACTTGCCATGTTAAGTATTA 1079
Query 1062 G 1062
|
Sbjct 1080 G 1080
Score = 289 bits (156), Expect = 5e-77
Identities = 308/377 (82%), Gaps = 27/377 (7%)
Strand=Plus/Plus
Query 340 AAAAAGTCTCCACCA---CCTAAGCCATCATCGCCTCCACCAACTCCCAAAAAGTCTCCA 396
||||||||||||||| ||||| |||||| |||| |||| ||| |||||||| || |||
Sbjct 292 AAAAAGTCTCCACCATCGCCTAAACCATCACCGCCACCACGAACCCCCAAAAAATCCCCA 351
Query 397 CCACCGCCTAAACCATCATCGCCGCCACCAACT-CCCAAAAAGTCTCCACCATCGCCTAA 455
||||||||||||||||||||||||||||||| | |||||||||||||||||| | |||||
Sbjct 352 CCACCGCCTAAACCATCATCGCCGCCACCAA-TACCCAAAAAGTCTCCACCACCTCCTAA 410
Query 456 ACCATCATCGCCGCCACCAAGTCCCAAAAAGTCTCCGCCACCTCCTAAACCATC-TCCGT 514
||| |||||||||||||||| |||||||||||||| ||||| ||||||||||| |||
Sbjct 411 ACCCTCATCGCCGCCACCAACCCCCAAAAAGTCTCCACCACCGCCTAAACCATCATCCC- 469
Query 515 CTCCTCCTAAA-CC-ATCTACGCCTCCACCAACTCCTAAGA--AGTCTCCGCCCTC-TCC 569
| || || || || | | | |||||||| ||||||| | | || ||| | || |||
Sbjct 470 CGCCACC-AAGTCCCAAAAA-GTCTCCACCACCTCCTAA-ACCA-TCCCCGTC-TCCTCC 524
Query 570 TAAACCATCATCACCACCACCAAGCCCCAAA-AAGTCTCC-CCCGCCTCCTAAACCATCT 627
||||||||| |||| ||||||| | || || |||||||| ||| | |||| || |
Sbjct 525 AAAACCATCAACACCTCCACCAA-CACCTAAGAAGTCTCCTCCCTC-TCCT---CC--C- 576
Query 628 AAACCATCATCACCGCCACCAACTCCTAAGAAGTCTCCGCCACCTCCCAAACCATCTCCG 687
||||| || ||||||||||||| |||||| || ||||| || ||||| |||||||||||
Sbjct 577 AAACCCTCGTCACCGCCACCAAGTCCTAAAAAATCTCCACCGCCTCCTAAACCATCTCCA 636
Query 688 CCACCTCCTAAACCATC 704
| ||||||||||||||
Sbjct 637 TCTCCTCCTAAACCATC 653
Score = 206 bits (111), Expect = 5e-52
Identities = 244/302 (81%), Gaps = 33/302 (11%)
Strand=Plus/Plus
Query 292 AAAAAGTCTCCACCACCGCCTAAACCATCA-CCGCCGCCACGAACTCCCAAAAAGTCTCC 350
|||||||||||||||||||||||||||||| || ||||||| || |||||||||||||||
Sbjct 436 AAAAAGTCTCCACCACCGCCTAAACCATCATCC-CCGCCACCAAGTCCCAAAAAGTCTCC 494
Query 351 ACCACCTAAGCCATCATCGCCTCCACCAACTCCCAAAAAGTCTCCACCACCGCCTAAACC 410
||||||| || | | |||| | ||| |||||| ||| |||||
Sbjct 495 ACCACCT---CC-TAA--------ACCATC-CCC-----GTCTCCTCCA------AAACC 530
Query 411 ATCATCGCCGCCACCAACTCCCAAAAAGTCTCCACCATCGCCT---AAACCATCATCGCC 467
|||| | || |||||||| || || |||||||| || || ||| ||||| || || ||
Sbjct 531 ATCAACACCTCCACCAACACCTAAGAAGTCTCCTCCCTCTCCTCCCAAACCCTCGTCACC 590
Query 468 GCCACCAAGTCCCAAAAAGTCTCCGCCACCTCCTAAACCATCTCCGTCTCCTCCTAAACC 527
|||||||||||| ||||| ||||| || ||||||||||||||||| ||||||||||||||
Sbjct 591 GCCACCAAGTCCTAAAAAATCTCCACCGCCTCCTAAACCATCTCCATCTCCTCCTAAACC 650
Query 528 ATCTACGCCTCCACCAACTCCTAAGAAGTCTCCGCC-CTCTCCTAAACCATCATCA-CCA 585
||| ||||| |||||||||||||||||||||||||| | |||| |||||||| ||| |||
Sbjct 651 ATCAACGCCACCACCAACTCCTAAGAAGTCTCCGCCAC-CTCCCAAACCATC-TCAGCCA 708
Query 586 CC 587
||
Sbjct 709 CC 710
Score = 143 bits (77), Expect = 4e-33
Identities = 288/381 (76%), Gaps = 50/381 (13%)
Strand=Plus/Plus
Query 433 AAAAAGTCTCCACCATCGCCTAAACCATCATCGCCGCCACCAAGTCCCAAAAAGTCTCCG 492
|||||||||||||||||||||||||||||| |||| |||| || |||||||| || ||
Sbjct 292 AAAAAGTCTCCACCATCGCCTAAACCATCACCGCCACCACGAACCCCCAAAAAATCCCCA 351
Query 493 CCACCTCCTAAACCATC-TC-C-GTCTCC--T-CCTAAA----C-C-A-----TC-TA-- 532
||||| ||||||||||| || | | | || | || ||| | | | || ||
Sbjct 352 CCACCGCCTAAACCATCATCGCCGCCACCAATACCCAAAAAGTCTCCACCACCTCCTAAA 411
Query 533 CGC-C-TC-C----ACCAACTCCTAAGAAGTCTCCGCC-CTCTCCTAAACCATCATCACC 584
| | | || | |||||| || || |||||||| || | | |||||||||||||| ||
Sbjct 412 CCCTCATCGCCGCCACCAACCCCCAAAAAGTCTCCACCAC-CGCCTAAACCATCATCCCC 470
Query 585 ACCACCAAGCCCCAAAAAGTCTCCCCCGCCTCCTAAACCATC----T-------AAA-CC 632
|||||||| |||||||||||||| || |||||||||||||| | ||| ||
Sbjct 471 GCCACCAAGTCCCAAAAAGTCTCCACCACCTCCTAAACCATCCCCGTCTCCTCCAAAACC 530
Query 633 ATCATCACCGCCACCAACTCCTAAGAAGTCTCCGCCA-C-C-TCCCAAACCATC-TC-C- 686
|||| |||| |||||||| |||||||||||||| || | | ||||||||| || || |
Sbjct 531 ATCAACACCTCCACCAACACCTAAGAAGTCTCCTCCCTCTCCTCCCAAACCCTCGTCACC 590
Query 687 GCCACC---TCCTAAACCATCTCCTCCACGTCGTAAACCATCTCCGCCGACTCCTAAACC 743
|||||| ||||||| |||||| || | || |||||||||||| | ||||||||||
Sbjct 591 GCCACCAAGTCCTAAAAAATCTCCACCGCCTCCTAAACCATCTCCATCTCCTCCTAAACC 650
Query 744 ATCAACAACTCCACCATCTCC 764
|||||| | |||||| ||||
Sbjct 651 ATCAACGCCACCACCAACTCC 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5