BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473807 Length=1062 Score E Sequences producing significant alignments: (Bits) Value AT1G44191.1 | Symbols: | ECA1 gametogenesis related family pro... 1491 0.0 > AT1G44191.1 | Symbols: | ECA1 gametogenesis related family protein | chr1:16813654-16814733 REVERSE LENGTH=1080 Length=1080 Score = 1491 bits (807), Expect = 0.0 Identities = 993/1081 (92%), Gaps = 20/1081 (2%) Strand=Plus/Plus Query 1 ATGAAGAGCCTCATTTTCCTCGTACCTCTCCTTTGTCTCATCATTTCACCAACCACAACG 60 |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1 ATGAAGAGCCTCATCTTCCTCGTACCAATCCTTTGTCTCGTCATTTCACCAACCACAACG 60 Query 61 ATTGCAAGTTGGCCAAAACCTTCGGAAGTCTCCAAAGAGGACATGCTGATGAATACCGAC 120 || || ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| Sbjct 61 ATCGCTAGTTGGCCAAAACCTTCGGAAGTTTCCAATGAGGACATGTTGATGAATACCGAA 120 Query 121 CACAACCATTACTTTGGTAATAAATTGAACTACGAAGATTCCAAAGTCTGGAAATGTACA 180 ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 121 CACAACCATTACTTTGGTAATAAATTGAACTTCAAAGATTCCAAAGTCTGGAAATGTACA 180 Query 181 TACAACAACGGATCTGGAGCCGCCGTCTCTATTTCCTACCCTGCACCTCCACATCCTCCG 240 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| Sbjct 181 TACAACAACGGATCTGGAGCTGCCGTCTCTATTTCCTACCCTTCACCTCCACATCCGCCG 240 Query 241 TCACCAAAGCTACCAACTCCGTCGTCTCGGCCTCCTTCACCTCTATCTCCAAAAAAGTCT 300 || || |||| |||||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct 241 TCTCCGAAGCCACCAACTCCGTCGTCTCGGCCTCCGTCACCTCTATCACCGAAAAAGTCT 300 Query 301 CCACCACCGCCTAAACCATCACCGCCGCCACGAACTCCCAAAAAGTCTCCACCACC---T 357 |||||| ||||||||||||||||||| |||||||| |||||||| || |||||||| | Sbjct 301 CCACCATCGCCTAAACCATCACCGCCACCACGAACCCCCAAAAAATCCCCACCACCGCCT 360 Query 358 AAGCCATCATCGCCTCCACCAACT-CCCAAAAAGTCTCCACCACCGCCTAAACCATCATC 416 || ||||||||||| ||||||| | |||||||||||||||||||| |||||||| ||||| Sbjct 361 AAACCATCATCGCCGCCACCAA-TACCCAAAAAGTCTCCACCACCTCCTAAACCCTCATC 419 Query 417 GCCGCCACCAACTCCCAAAAAGTCTCCACCATCGCCTAAACCATCATCGCCGCCACCAAG 476 |||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 420 GCCGCCACCAACCCCCAAAAAGTCTCCACCACCGCCTAAACCATCATCCCCGCCACCAAG 479 Query 477 TCCCAAAAAGTCTCCGCCACCTCCTAAACCATCTCCGTCTCCTCCTAAACCATCTACGCC 536 ||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| || || Sbjct 480 TCCCAAAAAGTCTCCACCACCTCCTAAACCATCCCCGTCTCCTCCAAAACCATCAACACC 539 Query 537 TCCACCAACTCCTAAGAAGTCTCCGCCCTCTCCT---AAACCATCATCACCACCACCAAG 593 ||||||||| |||||||||||||| ||||||||| ||||| || ||||| |||||||| Sbjct 540 TCCACCAACACCTAAGAAGTCTCCTCCCTCTCCTCCCAAACCCTCGTCACCGCCACCAAG 599 Query 594 CCCCAAAAAGTCTCCCCCGCCTCCTAAACCATCT--A---------AA-CCATCATCACC 641 || ||||| ||||| |||||||||||||||||| | || |||||| | || Sbjct 600 TCCTAAAAAATCTCCACCGCCTCCTAAACCATCTCCATCTCCTCCTAAACCATCAACGCC 659 Query 642 GCCACCAACTCCTAAGAAGTCTCCGCCACCTCCCAAACCATCTCCGCCACCTCCTAAACC 701 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 660 ACCACCAACTCCTAAGAAGTCTCCGCCACCTCCCAAACCATCTCAGCCACCTCCTAAACC 719 Query 702 ATCTCCTCCACGTCGTAAACCATCTCCGCCGACTCCTAAACCATCAACAACTCCACCATC 761 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 ATCTCCTCCACGTCGTAAACCATCTCCGCCGACTCCTAAACCATCAACAACTCCACCATC 779 Query 762 TCCAAAAATTTCACCTCCGCGTCCAACTCCCAAGAAGTCTCCACCACCGCCACCAACTCC 821 ||| ||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 780 TCCTAAACCATCACCTCCGCGTCCAACTCCCAAGAAGTCTCCACCACCACCAACAACTCC 839 Query 822 GGCACATCGATATCAAAATCCGTGGGTGCATTTCGCGAGCTGCATTAGCGAATTTGGACC 881 | | | | | ||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 840 GTCGCCTAGTTATCAGGATCCGTGGGTGCATTTCGCGAACTGCATTAGCGAATTTGGACC 899 Query 882 GTCGGCAATATGTAAGCAACAGATGGAGGTAAGTTACTACAGAAGAGGGTTTCTTGTTAG 941 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 900 GTCGGCAATATGTAAGCAACAGATGGAAGTAAGTTACTACAGAAGAGGGTTTCTTGTTAG 959 Query 942 TGACTATTGCTGCAACCTTATTGTCAACATGAGACATGAATGTACCGATGTCATTTTGGG 1001 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 TGACTATTGCTGCAACCTTATTGTCAACATGAGACATGAATGTACCGATGTCATTTTGGG 1019 Query 1002 CTTCTTCACCGATCCTTTCTTCGTTCCTCTTATTCGTTACACTTGTCATGTTAAGTATTA 1061 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 1020 CTTCTTCACCGATCCTTTCTTCGTTCCACTTATTCGTTACACTTGCCATGTTAAGTATTA 1079 Query 1062 G 1062 | Sbjct 1080 G 1080 Score = 289 bits (156), Expect = 5e-77 Identities = 308/377 (82%), Gaps = 27/377 (7%) Strand=Plus/Plus Query 340 AAAAAGTCTCCACCA---CCTAAGCCATCATCGCCTCCACCAACTCCCAAAAAGTCTCCA 396 ||||||||||||||| ||||| |||||| |||| |||| ||| |||||||| || ||| Sbjct 292 AAAAAGTCTCCACCATCGCCTAAACCATCACCGCCACCACGAACCCCCAAAAAATCCCCA 351 Query 397 CCACCGCCTAAACCATCATCGCCGCCACCAACT-CCCAAAAAGTCTCCACCATCGCCTAA 455 ||||||||||||||||||||||||||||||| | |||||||||||||||||| | ||||| Sbjct 352 CCACCGCCTAAACCATCATCGCCGCCACCAA-TACCCAAAAAGTCTCCACCACCTCCTAA 410 Query 456 ACCATCATCGCCGCCACCAAGTCCCAAAAAGTCTCCGCCACCTCCTAAACCATC-TCCGT 514 ||| |||||||||||||||| |||||||||||||| ||||| ||||||||||| ||| Sbjct 411 ACCCTCATCGCCGCCACCAACCCCCAAAAAGTCTCCACCACCGCCTAAACCATCATCCC- 469 Query 515 CTCCTCCTAAA-CC-ATCTACGCCTCCACCAACTCCTAAGA--AGTCTCCGCCCTC-TCC 569 | || || || || | | | |||||||| ||||||| | | || ||| | || ||| Sbjct 470 CGCCACC-AAGTCCCAAAAA-GTCTCCACCACCTCCTAA-ACCA-TCCCCGTC-TCCTCC 524 Query 570 TAAACCATCATCACCACCACCAAGCCCCAAA-AAGTCTCC-CCCGCCTCCTAAACCATCT 627 ||||||||| |||| ||||||| | || || |||||||| ||| | |||| || | Sbjct 525 AAAACCATCAACACCTCCACCAA-CACCTAAGAAGTCTCCTCCCTC-TCCT---CC--C- 576 Query 628 AAACCATCATCACCGCCACCAACTCCTAAGAAGTCTCCGCCACCTCCCAAACCATCTCCG 687 ||||| || ||||||||||||| |||||| || ||||| || ||||| ||||||||||| Sbjct 577 AAACCCTCGTCACCGCCACCAAGTCCTAAAAAATCTCCACCGCCTCCTAAACCATCTCCA 636 Query 688 CCACCTCCTAAACCATC 704 | |||||||||||||| Sbjct 637 TCTCCTCCTAAACCATC 653 Score = 206 bits (111), Expect = 5e-52 Identities = 244/302 (81%), Gaps = 33/302 (11%) Strand=Plus/Plus Query 292 AAAAAGTCTCCACCACCGCCTAAACCATCA-CCGCCGCCACGAACTCCCAAAAAGTCTCC 350 |||||||||||||||||||||||||||||| || ||||||| || ||||||||||||||| Sbjct 436 AAAAAGTCTCCACCACCGCCTAAACCATCATCC-CCGCCACCAAGTCCCAAAAAGTCTCC 494 Query 351 ACCACCTAAGCCATCATCGCCTCCACCAACTCCCAAAAAGTCTCCACCACCGCCTAAACC 410 ||||||| || | | |||| | ||| |||||| ||| ||||| Sbjct 495 ACCACCT---CC-TAA--------ACCATC-CCC-----GTCTCCTCCA------AAACC 530 Query 411 ATCATCGCCGCCACCAACTCCCAAAAAGTCTCCACCATCGCCT---AAACCATCATCGCC 467 |||| | || |||||||| || || |||||||| || || ||| ||||| || || || Sbjct 531 ATCAACACCTCCACCAACACCTAAGAAGTCTCCTCCCTCTCCTCCCAAACCCTCGTCACC 590 Query 468 GCCACCAAGTCCCAAAAAGTCTCCGCCACCTCCTAAACCATCTCCGTCTCCTCCTAAACC 527 |||||||||||| ||||| ||||| || ||||||||||||||||| |||||||||||||| Sbjct 591 GCCACCAAGTCCTAAAAAATCTCCACCGCCTCCTAAACCATCTCCATCTCCTCCTAAACC 650 Query 528 ATCTACGCCTCCACCAACTCCTAAGAAGTCTCCGCC-CTCTCCTAAACCATCATCA-CCA 585 ||| ||||| |||||||||||||||||||||||||| | |||| |||||||| ||| ||| Sbjct 651 ATCAACGCCACCACCAACTCCTAAGAAGTCTCCGCCAC-CTCCCAAACCATC-TCAGCCA 708 Query 586 CC 587 || Sbjct 709 CC 710 Score = 143 bits (77), Expect = 4e-33 Identities = 288/381 (76%), Gaps = 50/381 (13%) Strand=Plus/Plus Query 433 AAAAAGTCTCCACCATCGCCTAAACCATCATCGCCGCCACCAAGTCCCAAAAAGTCTCCG 492 |||||||||||||||||||||||||||||| |||| |||| || |||||||| || || Sbjct 292 AAAAAGTCTCCACCATCGCCTAAACCATCACCGCCACCACGAACCCCCAAAAAATCCCCA 351 Query 493 CCACCTCCTAAACCATC-TC-C-GTCTCC--T-CCTAAA----C-C-A-----TC-TA-- 532 ||||| ||||||||||| || | | | || | || ||| | | | || || Sbjct 352 CCACCGCCTAAACCATCATCGCCGCCACCAATACCCAAAAAGTCTCCACCACCTCCTAAA 411 Query 533 CGC-C-TC-C----ACCAACTCCTAAGAAGTCTCCGCC-CTCTCCTAAACCATCATCACC 584 | | | || | |||||| || || |||||||| || | | |||||||||||||| || Sbjct 412 CCCTCATCGCCGCCACCAACCCCCAAAAAGTCTCCACCAC-CGCCTAAACCATCATCCCC 470 Query 585 ACCACCAAGCCCCAAAAAGTCTCCCCCGCCTCCTAAACCATC----T-------AAA-CC 632 |||||||| |||||||||||||| || |||||||||||||| | ||| || Sbjct 471 GCCACCAAGTCCCAAAAAGTCTCCACCACCTCCTAAACCATCCCCGTCTCCTCCAAAACC 530 Query 633 ATCATCACCGCCACCAACTCCTAAGAAGTCTCCGCCA-C-C-TCCCAAACCATC-TC-C- 686 |||| |||| |||||||| |||||||||||||| || | | ||||||||| || || | Sbjct 531 ATCAACACCTCCACCAACACCTAAGAAGTCTCCTCCCTCTCCTCCCAAACCCTCGTCACC 590 Query 687 GCCACC---TCCTAAACCATCTCCTCCACGTCGTAAACCATCTCCGCCGACTCCTAAACC 743 |||||| ||||||| |||||| || | || |||||||||||| | |||||||||| Sbjct 591 GCCACCAAGTCCTAAAAAATCTCCACCGCCTCCTAAACCATCTCCATCTCCTCCTAAACC 650 Query 744 ATCAACAACTCCACCATCTCC 764 |||||| | |||||| |||| Sbjct 651 ATCAACGCCACCACCAACTCC 671 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52007764620 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5