BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473816
Length=1388
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44750.1 | Symbols: ATPUP11, PUP11 | purine permease 11 | ch... 1903 0.0
> AT1G44750.1 | Symbols: ATPUP11, PUP11 | purine permease 11 |
chr1:16892639-16895465 FORWARD LENGTH=1486
Length=1486
Score = 1903 bits (1030), Expect = 0.0
Identities = 1155/1216 (95%), Gaps = 6/1216 (0%)
Strand=Plus/Plus
Query 174 CAGGTAATCAAGAACCAATCTTGGTGAAAGAAGAGAGTGTGGTAGGTATACCAACACCAC 233
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 90 CAGGTAATCAAGAACCAATCTTGGTGAAAGAAGAGAGTGTGGTTGGTATACCAACACCAC 149
Query 234 TCTTGAAGCTTAAAAGTTGGCAATGGTGGGTTCTTGTGTCTATTAACATCTTTTTCCTTA 293
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 150 TCTTGAAGCTTAAAAGTTGGCAATGGTGGGTTCTTGTATCCGTTAACATCTTTTTCCTTA 209
Query 294 TTGGTGGTCAAGCTGCTTCGGTTCTTCTTGGTCGGTTTTACTATGATCAAGGTGGAAACA 353
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 210 TTGGTGGTCAAGCTGCTTCGGTTCTTCTTGGTAGGTTTTACTATGATGAAGGTGGAAACA 269
Query 354 GTAAATGGATGGCTACTCTTGTTCAAACCGCTGCTTTTCCTATCCTCTATATCCCGCTTT 413
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 270 GTAAATGGATGGCAACTCTTGTTCAAACGGCTGCTTTTCCTATACTCTATATCCCGCTTT 329
Query 414 TGCTACTTCCGTCTTCTTCGAG-TAGTGCCGAGTCTTCAGAGACTTCTTGTTCACTCAAG 472
||||||||||| |||||| | ||||| |||||||| |||| ||| ||||||||||||
Sbjct 330 TGCTACTTCCG---TCTTCG-GCTAGTGTAGAGTCTTCGGAGAGTTCGTGTTCACTCAAG 385
Query 473 TACATTGTTTTGATCTATGTTTTGCTCGGTGTGATCATTGCTGGTGACAACATGTTGTAC 532
|||||||||||||||||||||||||||||||||||||||||||| || || ||||| |||
Sbjct 386 TACATTGTTTTGATCTATGTTTTGCTCGGTGTGATCATTGCTGGAGATAATATGTTATAC 445
Query 533 TCTGTTGGACTTTTGTACCTCTCTGCTTCGACTTATTCGCTCATTTGCGCTACTCAGTTA 592
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 446 TCTGTTGGACTTTTGTACCTCTCTGCATCGACGTATTCGCTCATTTGCGCTACTCAGTTA 505
Query 593 GCTTTCAACGCGGTGTTCTCTTATTTCATCAACGCTCAGAAGTTCACTGCTTTGATTCTC 652
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 506 GCTTTCAACGCGGTGTTCTCTTATTTCATCAATGCTCAGAAGTTCACTGCTTTGATTCTC 565
Query 653 AACTCTGTTGTTCTCCTGTCGTTTTCCGCTGCTTTGATTGCCCTCAATGATGATGCAGAT 712
||||| ||||||||| ||||||| |||||||||||||| || |||||||||||||| |||
Sbjct 566 AACTCCGTTGTTCTCTTGTCGTTCTCCGCTGCTTTGATAGCTCTCAATGATGATGCGGAT 625
Query 713 ACTCCTTCTGGTGTCTCCAGGTCTAAGTATATTGTTGGGTTTGTGTGTACACTTGCTGCG 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 ACTCCTTCTGGTGTCTCCAGGTCTAAGTATATTGTTGGGTTTGTGTGTACACTTGCTGCG 685
Query 773 TCTGCTCTCTATTCTCTGTTGCTATCTCTTATGCAGTTCTCGTTCGAGAAGATTCTGAAG 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 TCTGCTCTCTATTCTCTGTTGCTATCTCTTATGCAGTTCTCGTTCGAGAAGATTCTGAAG 745
Query 833 AGGGAGACATTTTCTGTGGTTCTTGAAATGCAAATCTACACTTCTTTAGTGGCGACTTGT 892
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 AGGGAGACGTTTTCTGTGGTTCTTGAAATGCAAATCTACACTTCTTTAGTGGCGACTTGT 805
Query 893 GTCTCGGTTATTGGGCTTTTTGCTAGCGGGGAATGGAGAACGCTGCACGGGGAAATGGAA 952
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 806 GTTTCGGTTATAGGGCTTTTTGCTAGCGGGGAATGGAGAACGCTGCATGGGGAAATGGAA 865
Query 953 GGTTATCATAAAGGGCAAGCCTCTTATGTACTGACTTTGGTCTGGACAGCAGTTACGTGG 1012
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 866 GGTTATCATAAAGGGCAAGCCTCTTATGTACTGACCTTGGTCTGGACAGCAGTTACTTGG 925
Query 1013 CAAGTGTGTTCTGTAGGAGTGGTGGGTTTGATATTTCTGGTGACGTCGCTCTTCTCAAAC 1072
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 926 CAAGTGTGTTCTGTTGGAGTCGTGGGTTTGATATTTCTGGTGACGTCGCTCTTCTCAAAC 985
Query 1073 GTCATTAGTACGCTCTCTCTAGCTGTGACTCCACTCGCAGCTTTGGTTGTGTTCCGTGAT 1132
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 986 GTCATTAGTACGCTCTCTCTAGCTGTGACTCCACTAGCAGCTTTGGTTGTGTTCCGTGAT 1045
Query 1133 AAAATGAGTGGCGTTAAGATTATGGCAATGCTGATCGCTCTTTGGGGTTTCGCTTCTTAT 1192
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1046 AAAATGAGTGGTGTTAAGATTATGGCAATGCTGATCGCTATTTGGGGTTTCGCTTCTTAT 1105
Query 1193 GTTTACCAGAATCATATCGATGACTTGAAAGTTAGACGAGCACGACAACAAGCTCAAGCC 1252
||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1106 GTTTACCAGAATCATATTGATGACTTGAAAGTAAGACAAGCACGACAACAAGCTCAAGCC 1165
Query 1253 GGGCGGGTGGAACCGCCTTGTTGATTCTGCAATAATACAGGCAGAAATATTGGTTTAGGA 1312
|||||||| |||||||| |||||||||||| || || |||||||||| ||| ||||| |
Sbjct 1166 GGGCGGGTAGAACCGCCCTGTTGATTCTGCGATGATTCAGGCAGAAACATTAATTTAGAA 1225
Query 1313 TGCTATACGTTCTGATTTAGATAAGCAACAATAATTGTCACTGGTATGACAAGCTACTTG 1372
||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |
Sbjct 1226 GGCTATACGTTCTG-TTTAGATAAGCAACAATAATTGTCACTCGTAGGACAAGCTACTGG 1284
Query 1373 TCTTGTCATATTGTTT 1388
||||| ||||||||||
Sbjct 1285 TCTTGCCATATTGTTT 1300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68373142290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5