BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473817
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44760.1 | Symbols: | Adenine nucleotide alpha hydrolases-l... 1273 0.0
> AT1G44760.1 | Symbols: | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr1:16896686-16898612 REVERSE LENGTH=1035
Length=1035
Score = 1273 bits (689), Expect = 0.0
Identities = 829/892 (93%), Gaps = 27/892 (3%)
Strand=Plus/Plus
Query 1 CTACCAATTAAATCTCTCTCACTCTTCTCTTTCCATTTTCACATTTTCGAGTTTTACACC 60
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 2 CTACCAATTAAATCTCTCTTTTTCTTCTCTTACCATTTTCACATTTTCGAGTTTTACACC 61
Query 61 AAAGCCTCTTCACTttctctctctctagtctctctactatagtctcctactaggctacta 120
||||||||||||| | | |||||| |||||||||||||||||||||||| ||||||
Sbjct 62 AAAGCCTCTTCAC--T-T-TCTCTC---TCTCTCTACTATAGTCTCCTACTA-CCTACTA 113
Query 121 cctacttcttcttctctctcCCTTCATTCACTAC--AAAAAGCTTCGAGCTCTCATCACC 178
|||||||||| ||||||| | |||||||||||| |||||||||||||||| ||||||
Sbjct 114 -CTACTTCTTC-TCTCTCT-CTTTCATTCACTACATAAAAAGCTTCGAGCTCCCATCACT 170
Query 179 A-A-ACTCTCCAAAAATGCAATTTTCAAGAAACTCGATCCTTAGGCAACTAAGCAGAAAA 236
| | || ||||||| |||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 171 ATATACCCTCCAAAGATGCAATTTTCAAGAAACTCAATCCTTAGGCAACTAAGCCGAAAA 230
Query 237 GAAGGTTGGAGATCGGCTTCTAAAAGGTGGACTTCCGGTGATAGCTCAACAGCCTTCAAC 296
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 231 GAAGGTTGGAGATCGGCTTCTAAAAGGTGGACTTCCGGAGATAGCTCAACAGCCTTCAAC 290
Query 297 GACGACACAAACGGTGGTGATTGTGGTGGTGGCTACTCTTCAATGGAGGGTCTTTATGGG 356
|||||||| || ||| |||||||| ||||| ||||||||||||||||||||
Sbjct 291 GACGACAC-AA-----GTG---GTGGTGGT---TACTCATCAATGGAGGGTCTTTATGGA 338
Query 357 GTTTACTCCGGTGGTGATACGGCGGCAAGAAGTAAGAGAGTGATGGTTGTGGTTGATGAG 416
|||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 339 GTTTACTCCGGTGGAGACACGGCGGCGAGAAGTAAGAGAGTGATGGTTGTAGTTGATGAA 398
Query 417 ACTTCGAGGTCTAAGCATGCTATGATGTGGGCTTTGACTCATTTAACTAACAAAGGAGAT 476
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 399 AGTTCGAGGTCTAAGCATGCTATGATGTGGGCTTTGACTCATTTGACTAACAAAGGAGAT 458
Query 477 TTAATGACTCTTCTTCATGTTGTCTCTCCTCATGATGAAGCTTCTCCTTCTTTGGCTCAG 536
||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct 459 TTAGTGACTCTTCTTCATGTTGTGTCTCCTGATGATGAAGCTACTCCTTCTTTGGCTCAA 518
Query 537 TCCCTTGGTTCTCTTTGCAAAGCTTGTAAACCTGAGGTGGATGTGGAGGCATTGGTGATT 596
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 519 TCTCTTGGTTCTCTTTGCAAAGCTTGTAAACCCGAGGTGGATGTGGAGGCATTGGTGATT 578
Query 597 CAAGGACCAAAGCTAGCAACAGTGTTAAGCCAAGTAAAGAAACTTGAAGTCTCTGTTCTT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 CAAGGACCAAAGCTAGCAACAGTGTTAAGCCAAGTAAAGAAACTTGAAGTCTCTGTTCTT 638
Query 657 GTGTTGGGTCAGAAGAAATCTGCACCACTCATCTCTTGCTTATGTGGACCTAGTAGATCA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 639 GTGTTGGGTCAGAAGAAATCTGCACCACTCATCTCTTGCTTATGTGGACCTAGCAGATCA 698
Query 717 GAGGAGCTCGTGAATCGGTGCATCAACGGTGCAGATTGTTTGACGATTGGTGTGAGGAAG 776
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 699 GAGGAGCTCGTGAATCGTTGCATCAACGGTGCAGATTGTTTAACGATTGGTGTGAGAAAA 758
Query 777 CAATGCAAAGGTGTTGGTGGGTACTTGATCAATACACGATGGCAGAAGAATTTCTGGCTC 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 CAATGCAAAGGTGTTGGTGGGTACTTGATCAATACACGATGGCAGAAGAATTTCTGGCTC 818
Query 837 TTGGCCTAATCACAATTCTAATCTTATTAGATAAATTGTGTTAATTCTATGT 888
|||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 819 TTGGCCTAATCACAATTCTAATCTTATTAGATAATTTGTGTTAATTCTGTGT 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5