BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473819
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44770.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1705 0.0
> AT1G44770.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G49710.3);
Has 81 Blast hits to 81 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:16907539-16909495
REVERSE LENGTH=1197
Length=1197
Score = 1705 bits (923), Expect = 0.0
Identities = 1099/1180 (93%), Gaps = 28/1180 (2%)
Strand=Plus/Plus
Query 1 CAAACGACAAGTAGTTTCCTTCAGAATTTATCA-TATCCAGA---T----------ACGG 46
||||||||||||||||||||| ||||||||||| |||||||| | ||||
Sbjct 1 CAAACGACAAGTAGTTTCCTTTAGAATTTATCATTATCCAGATTTTCGAGAAGGAGACGG 60
Query 47 CgaagaagaagaagaagaTCAAAAACCATGACGAGCCACCACGCGATCGAAGTGACGAAG 106
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TGAAGAAGAAGAAGAAGATC-AAAACCATGACGAGTCACCACGCGATCGAAGTGACGAAG 119
Query 107 ACGGTGCTAGAAGTAGCCGACGTGGCTTGGACCGCCGTGGAAACATACCATAACCACCAC 166
|||||||| |||||||||||||| || |||||||| |||||||| |||||| ||||||||
Sbjct 120 ACGGTGCTGGAAGTAGCCGACGTAGCATGGACCGCGGTGGAAACTTACCATCACCACCAC 179
Query 167 CACCACCATGACGAGAATCACGAGTCAACGAATCCGATTACCGATCCACGAGATCGTGAA 226
|||||||| ||||| |||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 180 CACCACCAAGACGAAAATCACGAGTCAACGAATCCAATTTCTGATCCACGAGATCGTGAA 239
Query 227 TTAGAAGCTCTTCGACAAGAGAATCGTCGTCTCAGGACTTTGCTTGAAGCGAATCTTAAG 286
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 TTAGAAGCTCTTCGTCAAGAGAATCGTCGTCTCAGGACTTTGCTTGAATCGAATCTTAAA 299
Query 287 CTTTTTGAGACTCTCGCTGAATCTGCTGCGTTATCTCACGATTGCCCTAGCGACCTCTAT 346
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 300 CTCTTTGAGACTCTCGCTGAATCTGCTGCGTTCTCTCATGATTGCCCTAGCGACCTCTAT 359
Query 347 GCTCGGCTTGTATCGATGGTTACTTCGAA-AGATTTCTTGGCTAGATTAGAGAAACTAAG 405
||| |||||||| ||||||||||||| || |||||||||||||||||||||||| |||||
Sbjct 360 GCTAGGCTTGTAACGATGGTTACTTC-AAGAGATTTCTTGGCTAGATTAGAGAATCTAAG 418
Query 406 ACAAGCTTTATCTAATGGAACGCGA-AATCAATTTCCATTCAAGGAACCAACAGAAGATG 464
||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 419 ACAAGCTTTATCTAATGGAACTC-AGAATCAATTTCCATTCAAGGAACCAACAGAAGATG 477
Query 465 ATGTTAAGACTGTTGAAGTTCTTATAGAGATGGATCATCAAGAGCCAAGTTGGTGGGTTT 524
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ATGTGAAGACTGTTGAAGTTCTTATAGAGATGGATCATCAAGAGCCAAGTTGGTGGGTTT 537
Query 525 TGGTTACTGATGATATGGTTCCTAGTAATGTCGAGGAACAAAGCGCGATCGATAATGATC 584
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 538 TAGTTACTGATGATATGGTTCCTAGTAATGTCGAGGAACAAAGCGCGATCGATAACGAAC 597
Query 585 ATTACATTGTTGTGAATGAAGAACTTGTGGTTGATGCTGTTGCTCACTTCTTGGCTAAAT 644
|||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||
Sbjct 598 ATTACATTGTTGTGAATGAAGAACATGTGATTGATGCTGTTGCTCACTTTTTGGCTAAAT 657
Query 645 GTATTATGTCAAATCCCAAAGCTAAGAATCTCAAACCTGACGAGCTTCAGAAACTTTTGG 704
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 658 GTATTATGTCAAATCCCAAAGCTAAGAATCTCAAACCTGAAGAGCTTCAGAAACTTTTGG 717
Query 705 CCCAAGAAGTTACTGCTCTGAGCAAGGTAGGGAAGGTAGTGGATATATGGCATGCTGGGA 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TGCAAGAAGTTACTGCTCTGAGCAAGGTAGGGAAGGTAGTGGATATATGGCATGCTGGGA 777
Query 765 AAATGTTCTACACACTGTCCACTTGGGGACTTGCATTTGGAGGGTTGTACCAAGCTCGTG 824
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 778 AAATGTTCTACACACTGTCCACTTGGGGACTTGCATTTGGAGGGTTATACCAAGCTCGTG 837
Query 825 GTGCGCTGAAGATAGCTGCTAAGGGTGTTCATGCGACCAGCAAGGTTGTTCTTAGGGCTC 884
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GTGTGCTGAAGATAGCTGCTAAGGGTGTTCATGCGACCAGCAAGGTTGTTCTTAGGGCTC 897
Query 885 TCTGAAACGT-ATAAGAGGTCTATCTAATGCGATGGAAGCGG-A--GACGATCTGCAACT 940
| ||||| || |||||||||||||||||||||||| ||| || | || ||||| |||||
Sbjct 898 TTTGAAA-GTTATAAGAGGTCTATCTAATGCGATGAAAGTGGGAATGATGATCTTCAACT 956
Query 941 ATCTTTGGGTTTGTCTTTACTGTACGAGACTCT-TTTTTAAATTACTAGCATTGCTTGTG 999
|||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||| ||||
Sbjct 957 ATCTTTGGGTTTGTCTTT-CTGTGCGAGACTCTGTTTTTAAATTAATAGCATTGCGTGTG 1015
Query 1000 TAAATAGTGTATATAGGGTTTGATCAATGTTGTATTTTATATTGATTTCAAATTCGACAT 1059
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1016 TAAATAGTGTAAATAGGGTTTGATCAATGTTGTATTTCATATTGATTTCAAATTCGACAT 1075
Query 1060 TTGTTCTTTGATTCTCGTTTATAAAAGCAGACAATTTGTGAATATTGAACCAAC-TTTGC 1118
||||||||||||||||||||||||| ||||||||||||||||||| |||| || |||||
Sbjct 1076 TTGTTCTTTGATTCTCGTTTATAAACGCAGACAATTTGTGAATATCGAAC-AATGTTTGC 1134
Query 1119 AGTTACTCAACTTATCATAGATCGAAAACAGACCTGAAAA 1158
|||||||| |||||||| ||| ||| ||||||||||||||
Sbjct 1135 AGTTACTCTACTTATCAAAGACCGACAACAGACCTGAAAA 1174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56827016940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5