BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473822
Length=1582
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44820.1 | Symbols: | Peptidase M20/M25/M40 family protein ... 2176 0.0
AT1G44180.1 | Symbols: | Peptidase M20/M25/M40 family protein ... 1489 0.0
> AT1G44820.1 | Symbols: | Peptidase M20/M25/M40 family protein
| chr1:16926324-16928704 FORWARD LENGTH=1694
Length=1694
Score = 2176 bits (1178), Expect = 0.0
Identities = 1475/1612 (92%), Gaps = 46/1612 (3%)
Strand=Plus/Plus
Query 1 aaaaaaaCCTTTGAA----CTTCCATGGCGGTCGcttctcttctctggactctct-tcct 55
|||||||||||| || ||||||||||| | || |||||||||||||||| | || |
Sbjct 4 AAAAAAACCTTTCAACTTCCTTCCATGGCGATATCTCCTCTTCTCTGGACTCT-TATCAT 62
Query 56 cttctccatcatcttctcactccaatcctcttcctcctcctcctcAGATACACCAATCAC 115
||||||||| |||||||||||||||| | | ||||||||| ||| |||||||||||
Sbjct 63 CTTCTCCATAATCTTCTCACTCCAAT-C-C-TCCTCCTCCGAAGAAGACACACCAATCAC 119
Query 116 ACGATTCCAACAATACCTCAGATTCAACACCGCTCATCCAAACCCTAACTACACCGCACC 175
|||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 ACGATTCCAACAATACTTAAGATTCAACACAGCTCATCCAAACCCTAACTACACCGCACC 179
Query 176 AGTCTCATTCCTCATTAACCAAGCTCAATCCATCGGTCTCACTACTAAAACCATCGAATT 235
| |||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 180 AATCTCCTTCCTCATTAACCAAGCTCAATCAATCGGTCTCACTACCAAAACAATCGAATT 239
Query 236 CGTCTCTGGTAAACCAGTTCTCCTCCTCACATGGCTAGGCTCAAACCCTAACCTCCCATC 295
| ||||||| |||||| |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 240 CATCTCTGGCAAACCAATTCTTCTCATCACATGGCTAGGCTCAAACCCTAACCTCCCATC 299
Query 296 AATTCTCTTCAACTCTCACCTCGACTCAGTCCCCGCCGAATCCGAGAAATGGA-TTCATC 354
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||| | |||
Sbjct 300 AATTCTCTTCAACTCTCATCTCGATTCAGTCCCCGCCGAATCAGAGAAATGGACAT-ATC 358
Query 355 CACCGTTCTCAGCTCACAAAACCAACGATGGTCACATCTACGCTCGCGGCGCGCAAGACG 414
|||||||||||||||||||||||| ||| || |||||||||||||| || ||||||||||
Sbjct 359 CACCGTTCTCAGCTCACAAAACCATCGACGGCCACATCTACGCTCGAGGAGCGCAAGACG 418
Query 415 ACAAGTGTATCGGAGTTCAATATCTAGAATCAATCAGGAATTTGAAATCGAGAGGATTCG 474
||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 419 ACAAGTGTATCGGAGTTCAATATCTAGAATCAATCAGAAACTTGAAATCGAGAGGCTTC- 477
Query 475 T-TCCTCTTCGTACGATTCATATCTCTTATGTTCCTGAAGAAGAGATCGGTGGATTCGAC 533
| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 478 TCACCTCTCCGTACGATTCATATCTCTTACGTTCCTGAAGAAGAGATCGGTGGATTCGAC 537
Query 534 GGGATGATGGAATTCGCTGCGTCATCGGAGTTTAGGGATTTGAATTTGGGATTTGCTATG 593
||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 538 GGGATGATGAAATTCGCGGCGTCATCGGAGTTTAAGGATTTGAATTTGGGATTTGCTATG 597
Query 594 GATGAAGGACAAGCGAATCCTGGTGATGAATTTAGGGTTTTTTATGCTGATCGGGTTCCG 653
|||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 598 GATGAAGGACAAGCTAATCCTGGCGATGAATTTAGGGTTTTTTACGCTGATCGAGTTCCA 657
Query 654 TGGAATCTTGTTATTAAAGCTGAGGGGATTCCAGGTCATGGAGCTAAGCTTTATGATAAT 713
||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 658 TGGCATTTTGTTATTAAAGCTGAGGGGATTCCAGGTCATGGCGCTAAGCTTTATGATAAT 717
Query 714 TCAGCTATGGAGAATTTGATGAAGAGTGTTGAGTTGATTTCGAAGTTTAGAGAGACACAG 773
||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct 718 TCAGCTATGGAGAATTTGATGAAGAGTGTTGAGTTGATTTCTAGGTTTAGAGAGTCACAG 777
Query 774 TTTGATTTTGTTAAAGCTGGTAAAGCTGCGAATTCGGAGGTTATCTCTGTGAATCCAGTT 833
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 778 TTTGATTTTGTTAAAGCTGGTAAAGCTGCGTATTCGGAGGTTATCTCTGTGAATCCAGTT 837
Query 834 TATCTTAAAGCTGGAACTCCTTCTACTACTGGGTTTGTGATGAATATGCAGCCTTCAGAA 893
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 838 TATCTTAAAGCTGGAACTCCTACTACTACTGGGTTTGTGATGAATATGCAGCCTTCAGAA 897
Query 894 GCAGAGGCTGGATATGATTTAAGGTTGCCTCCAATGGCAGATCCTGATGCAATGAAGAAA 953
||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 898 GCAGAAGCTGGGTATGATTTAAGGTTGCCTCCAATGGCAGATCCTGATGTTATGAAGAAA 957
Query 954 AGGATTGCTGAAGAATGGGCTCCTTCTATTAGGAACATGACCTACACGATA-ATAGAGAA 1012
|| |||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||
Sbjct 958 AGAATTGCTGAAGAATGGGCTCCTTCTATTAGGAACATGACCTACTCGATACA-AGAGAA 1016
Query 1013 AGGAAAGTTAAGAGACCATTTAGGGCGACCTATAATGACTCCAGCAAATGATTCTAATCC 1072
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1017 AGGAAAGTTAAGAGATCATTTAGGGCGACCTATAATGACTCCAGTAAATGATTCTAATCC 1076
Query 1073 GTGGTGGTCTATCTTCAAGCAAGCTGTTGAAGCAACT-GGTGGAAAACTCGCAAAGCCTG 1131
|||||||||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 1077 TTGGTGGTCTATCTTCAAGCAAGCTGTTGAAGCAA-TGGGAGGAAAACTCGCAAAGCCTG 1135
Query 1132 AAATTTTGGCTTCCACTACAGACTCACGTTTTCTTCGCACTTTGGGAATTCC-AGTTTTC 1190
||||||||||||| |||||||| ||||| ||| ||||||||||||||||||| | ||||
Sbjct 1136 AAATTTTGGCTTCAACTACAGATTCACGCTTTATTCGCACTTTGGGAATTCCAACTTTT- 1194
Query 1191 GGGTTCTCTCCAATGACCAATACTCCTATTTTATTGCATGACCATAACGAGTTCCTAAAG 1250
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1195 GGGTTCTCTCCAATGACCAATACGCCTATTTTATTGCATGACCATAACGAGTTCCTAAAG 1254
Query 1251 GATACTGTATTCATGAAAGGAATAGAAGTATATGAATCGGTTATCAGCGCTTTAAGTTCC 1310
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1255 GATACTGTATTCATGAAAGGAATAGAAGTATATGAATCGGTTATCAGCGCTCTAAGTTCC 1314
Query 1311 TTTGAGGGAGTATCTGATCAAGTGATTTGAAGCATGTATCA-ATGCAAGCAATTGTGAAA 1369
|||||||||| ||||| |||||||||||||||||||||| | |||||| ||||||||| |
Sbjct 1315 TTTGAGGGAGAATCTGCTCAAGTGATTTGAAGCATGTAT-ATATGCAAACAATTGTGACA 1373
Query 1370 CGCCGCTTGAAGATGGTCAAGGCTCACATTTCTATGACCAA-AAAGTGTAGCAGCTGTTT 1428
| | |||| | ||||||||||||||||| |||||||||| ||| |||| ||||||||
Sbjct 1374 CACTGCTT-A---TGGTCAAGGCTCACATTGCTATGACCAAGAAAA-GTAGTAGCTGTTT 1428
Query 1429 CATCTGTAAGTTATTTTTATCGACATTTACTCTT-----AA-A---T---G-GCT-GATA 1474
||||||||||||||||||||| ||| |||||||| || | | | | | | ||
Sbjct 1429 CATCTGTAAGTTATTTTTATCAACACTTACTCTTGCTTTAACACCCTTAAGTGGTTGGTA 1488
Query 1475 ATAATCCTTTGTATATAT--CAAACATTTGATTTGTCTGCATAATTCTCAAA-TGCTGAA 1531
|||||||||||||||||| || |||||||||||| ||||||||||||| || | |||||
Sbjct 1489 ATAATCCTTTGTATATATATCAGACATTTGATTTGCCTGCATAATTCTCTAACT-CTGAA 1547
Query 1532 GAGAAA-TGTCATTGGTGCTTGGAGCATGATTTTACAAAGTGTTGATCTTTT 1582
|||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1548 GAGAAAATGTCATTGGTGCTTGGAGCATGATTTCACAAAGTGTTGATCTTTT 1599
> AT1G44180.1 | Symbols: | Peptidase M20/M25/M40 family protein
| chr1:16807953-16810413 REVERSE LENGTH=1594
Length=1594
Score = 1489 bits (806), Expect = 0.0
Identities = 1145/1309 (87%), Gaps = 21/1309 (2%)
Strand=Plus/Plus
Query 21 ATGGCGGTCGct-tc-tcttctctggactctcttcctcttctcca-tcatcttctcactc 77
|||||||| | | || |||||||||||||||||||||||||| || | |||||||| |||
Sbjct 1 ATGGCGGT-G-TCTCTTCTTCTCTGGACTCTCTTCCTCTTCT-CATTTATCTTCTCCCTC 57
Query 78 caatc-ctcttc--ctcctcctcctcAGATACACCAATCACACGATTCCAACAATACCTC 134
||||| | | | ||| |||||||||||||||||||| |||||| |
Sbjct 58 CAATCACACAGCAAAGAAGAAGAAGAAGACACACCAATCACACGATTCCAGCAATACTTA 117
Query 135 AGATTCAACACCGCTCATCCAAACCCTAACTACACCGCACCAGTCTC-ATTCCTCATTAA 193
|||||||||||||||||||||||||||||||||||||||||| |||| ||| || || |
Sbjct 118 AGATTCAACACCGCTCATCCAAACCCTAACTACACCGCACCAATCTCTTTTCTTC-TTGA 176
Query 194 CCAAGCTCA-ATCCATCGGTCTCACTACTAAAACCATCGAATTCG-TCTCTGGTAAACCA 251
||||| | ||| || ||||| ||| || ||||||||| || | || ||||||| |||
Sbjct 177 TCAAGC-AAGATCAATTGGTCTTACTTCTCGAACCATCGAGTTTGTTC-CTGGTAAGCCA 234
Query 252 GTTCTCCTCCTCACATGGCTAGGCTCAAACCCTAACCTCCCATCAATTCTCTTCAACTCT 311
||||| ||||||||||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 235 GTTCTTCTCCTCACATGGCTAGGCTCAAACCTTAACCTTTCTTCAATTCTCTTCAACTCT 294
Query 312 CACCTCGACTCAGTCCCCGCCGAATCCGAGAAATGGATTCATCCACCGTTCTCAGCTCAC 371
|| ||||| || || ||||| ||||||||||| ||||| |||||||| ||||||||||||
Sbjct 295 CATCTCGATTCTGTTCCCGCGGAATCCGAGAAGTGGATACATCCACCATTCTCAGCTCAC 354
Query 372 AAAACCAACGATGGTCACATCTACGCTCGCGGCGCGCAAGACGACAAGTGTATCGGAGTT 431
||||| ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 355 CGAACCATCGATGGTCATATCTACGCTCGCGGCGCGCAAGATGACAAGTGTATAGGAGTT 414
Query 432 CAATATCTAGAATCAATCAGGAATTTGAAATCGAGAGGATTCGT-TCCTCTTCGTACGAT 490
|| ||||||||| |||||||||| |||||||| ||| | ||| | |||||||||||||||
Sbjct 415 CAGTATCTAGAAGCAATCAGGAACTTGAAATCAAGAAGCTTC-TCTCCTCTTCGTACGAT 473
Query 491 TCATATCTCTTATGTTCCTGAAGAAGAGATCGGTGGATTCGACGGGATGATGGAATTCGC 550
||||||||||| || ||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 474 CCATATCTCTTACGTACCTGAAGAAGAGATCGGTGGATTCGGTGGGATGATGAAATTCGC 533
Query 551 TGCGTCATCGGAGTTTAGGGATTTGAATTTGGGATTTGCTATGGATGAAGGACAAGCGAA 610
||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 534 GGCGTCTTCGGAGTTTAAAGATTTGAATTTGGGATTTGTTATGGATGAAGGACAAGCGAG 593
Query 611 TCCTGGTGATGAATTTAGGGTTTTTTATGCTGATCGGGTTCCGTGGAATCTTGTTATTAA 670
||| || ||||| || ||||| ||||| ||||| || ||| ||| |||| | |||
Sbjct 594 TCCCGGAGATGAGTTCAGGGTGTTTTACGCTGAACGAACTCCTTGGCATCTCGCTATCCG 653
Query 671 AGCTGAGGGGATTCCAGGTCATGGAGCTAAGCTTTATGATAATTCAGCTATGGAGAATTT 730
|||| | || || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 654 AGCTAATGGTATGCCAGGTCATGGTGCTAAGCTTTATGATAATTCAGCTATGGAGAATTT 713
Query 731 GATGAAGAGTGTTGAGTTGATTTCGAAGTTTAGAGAGACACAGTTTGATTTTGTTAAAGC 790
|||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 714 GATGAAGAGTGTTGAGTTGATTTCTAGGTTTAGAGAGTCACAGTTTGATTTTGTTAAAGC 773
Query 791 TGGTAAAGCTGCGAATTCGGAGGTTATCTCTGTGAATCCAGTTTATCTTAAAGCTGGAAC 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TGGTAAAGCTGCGAATTCGGAGGTTATCTCTGTGAATCCAGTTTATCTTAAAGCTGGAAC 833
Query 851 TCCTTCTACTACTGGGTTTGTGATGAATATGCAGCCTTCAGAAGCAGAGGCTGGATATGA 910
||| || |||||||| ||||||||||| ||||| |||||||||||||| | ||| |||||
Sbjct 834 TCCCTCCACTACTGGATTTGTGATGAACATGCAACCTTCAGAAGCAGAAGTTGGGTATGA 893
Query 911 TTTAAGGTTGCCTCCAATGGCAGATCCTGATGCAATGAAGAAAAGGATTGCTGAAGAATG 970
| |||| |||||||||||||||||||| | ||| ||||||||||||||||||| |||||
Sbjct 894 TCTAAGATTGCCTCCAATGGCAGATCCAGTTGCTTTGAAGAAAAGGATTGCTGAGGAATG 953
Query 971 GGCTCCTTCTATTAGGAACATGACCTACACGATAATAGAGA-AAGGAAAGTTAAGAGACC 1029
||||||||||||||||||||||||||||||| ||| | | | |||||||||||| |||||
Sbjct 954 GGCTCCTTCTATTAGGAACATGACCTACACGCTAAAACA-ACAAGGAAAGTTAACAGACC 1012
Query 1030 ATTTAGGGCGACCTATAATGACTCCAGCAAATGATTCTAATCCGTGGTGGTCTATCTTCA 1089
||||||||||||||||||||||| || |||||||| | ||||| ||||||||||||||||
Sbjct 1013 ATTTAGGGCGACCTATAATGACTACAACAAATGATACCAATCCTTGGTGGTCTATCTTCA 1072
Query 1090 AGCAAGCTGTTGAAGCAACTGGTGGAAAACTCGCAAAGCCTGAAATTTTGGCTTCCACTA 1149
|||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| ||||
Sbjct 1073 AGCAAGCTGTTGAAGCAACTGGAGGAAAACTCGCAAAGCCTGAAATATTGATTTCAACTA 1132
Query 1150 CAGACTCACGTTTTCTTCGCACTTTGGGAATTCCAGTTTTCGGGTTCTCTCCAATGACCA 1209
|||| ||||| ||| |||||||||| ||||| |||||| | || ||||||||||||| ||
Sbjct 1133 CAGATTCACGCTTTATTCGCACTTTAGGAATACCAGTTCTAGGTTTCTCTCCAATGATCA 1192
Query 1210 ATACTCCTATTTTATTGCATGACCATAACGAGTTCCT-AAAGGATACTGTATTCATGAAA 1268
|||| ||||||||| |||||||||||||||||||||| |||| |||| || |||||||||
Sbjct 1193 ATACACCTATTTTAGTGCATGACCATAACGAGTTCCTTAAAG-ATACCGTGTTCATGAAA 1251
Query 1269 GGAATAGAAGTATATGAATCGGTTATCAGCGCTTTAAGTTCCTTTGAGG 1317
||||||| |||||||||||| |||||||||||| |||||||||||||||
Sbjct 1252 GGAATAGGAGTATATGAATCAGTTATCAGCGCTCTAAGTTCCTTTGAGG 1300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78112048020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5