BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473823 Length=636 Score E Sequences producing significant alignments: (Bits) Value AT1G44830.1 | Symbols: | Integrase-type DNA-binding superfamil... 987 0.0 > AT1G44830.1 | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:16933792-16934511 FORWARD LENGTH=720 Length=720 Score = 987 bits (534), Expect = 0.0 Identities = 603/637 (95%), Gaps = 2/637 (0%) Strand=Plus/Plus Query 1 ATGGTGAAAACACTTCAAAAGACTA-CAAAGAGAATGtcatctccatcatcatcatcttc 59 ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 1 ATGGTGAAAACACTTCAAAAGAC-ACCAAAGAGAATGTCATCTCCATCATCATCATCTTC 59 Query 60 atcatcctcatcaacatcatcatcatccatAAGGATGAAGAAGTACAAAGGAGTGAGAAT 119 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 60 ATCATCCTCATCAACATCATCATCATCCATAAGGATGAAGAAGTACAAGGGAGTGAGAAT 119 Query 120 GAGAAGTTGGGGTTCATGGGTTTCAGAGATCAGAGCTCCTAACCAAAAGACAAGGATCTG 179 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 120 GAGAAGTTGGGGTTCATGGGTTTCAGAGATCAGAGCTCCTAATCAAAAGACAAGGATCTG 179 Query 180 GCTTGGTTCTTACTCAACCGCTGAAGCCGCGGCTAGAGCCTACGACGCAGCTCTTCTCTG 239 |||||||||||||||||| |||||||||||||||||||||||||||||||| || || || Sbjct 180 GCTTGGTTCTTACTCAACTGCTGAAGCCGCGGCTAGAGCCTACGACGCAGCACTCCTATG 239 Query 240 TCTCAAAGGATCCTCAGCTAATAATCTCAACTTCCCAGAGATCTCATCTTCTCTCTTTAA 299 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 240 TCTTAAAGGATCCTCAGCTAATAATCTCAACTTCCCAGAGATCTCAACTTCTCTCTACCA 299 Query 300 CATTATCAACAATGGTGATAACAACAATGACATGTCTCCAAAGTCCATACAGAGAGTAgc 359 ||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||| Sbjct 300 TATTATCAACAATGGTGATAACAACAATGACATGTCCCCTAAGTCTATACAAAGAGTAGC 359 Query 360 tgctgctgctgctgcAGCCAACACAGATCCTTCTTCATCATCAGTCTCTACTTCATCTCC 419 ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 360 AGCTGCAGCTGCTGCTGCCAACACAGATCCTTCCTCATCATCAGTCTCTACTTCATCTCC 419 Query 420 ATTGCTTTCATCTCCATCTGAAGATCTCTATGATGTTGTCTCCATGTCACAGTACGACCA 479 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 420 ATTGCTTTCCTCTCCATCTGAAGATCTCTATGATGTTGTCTCCATGTCACAGTATGACCA 479 Query 480 ACAAGTCTCCTTGTCTGAATCATCATCATGGTACAATTGTTTTGATGGTGATGATGAATT 539 |||||||||||||||||||||||||||||||||||| || ||||||||||||||| | || Sbjct 480 ACAAGTCTCCTTGTCTGAATCATCATCATGGTACAACTGCTTTGATGGTGATGATCAGTT 539 Query 540 CATGTTCATTAATGGCGTTTCGGCGCCTTATTTGACAACACCACTTTCTGATGATTTCTT 599 ||||||||||||||| || || ||||| |||||||||||| ||||||||||||||||||| Sbjct 540 CATGTTCATTAATGGAGTCTCCGCGCCGTATTTGACAACATCACTTTCTGATGATTTCTT 599 Query 600 TGAGGAAGGAGATATCAGATTATGGAATTTCTGCTGA 636 ||||||||||||||||||||||||||| ||||||||| Sbjct 600 TGAGGAAGGAGATATCAGATTATGGAACTTCTGCTGA 636 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30693063817 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5