BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473826
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44890.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1301 0.0
> AT1G44890.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: homolog of yeast oxidase assembly 1 (OXA1) (TAIR:AT5G62050.1);
Has 40 Blast hits to 40 proteins in 7 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39;
Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). |
chr1:16963144-16964966 FORWARD LENGTH=1123
Length=1123
Score = 1301 bits (704), Expect = 0.0
Identities = 894/981 (91%), Gaps = 32/981 (3%)
Strand=Plus/Plus
Query 1 ATGTCACTTGTTCGTTGTTTATCCCTCAGGTCGGTGCTTAATCCTCAACGTCACCGATCA 60
||||| || || ||||||||||||||||| ||||| || |||||||||||| ||||||||
Sbjct 130 ATGTCGCTCGTCCGTTGTTTATCCCTCAGATCGGTTCTCAATCCTCAACGTTACCGATCA 189
Query 61 TCTTATTCATGTCTCATCCATCTTCA-AACTCCTCGTGAAGAAGACGAACCTACACGCAA 119
||||| || | ||||||||||||||| || ||||||||||||||| |||||||||| | |
Sbjct 190 TCTTACTCCTTTCTCATCCATCTTCAGAA-TCCTCGTGAAGAAGAAGAACCTACACAC-A 247
Query 120 AACTCCATCAATTCGAAGTTACCACAGTTTCATTCACCAGAATTCGTTAATCCGTG---C 176
|| | | |||||||||||||||| ||||||||||||| ||||||||| ||| |
Sbjct 248 AA----A-C---TCGAAGTTACCACAGTATCATTCACCAGAACTCGTTAATCGGTGCCTC 299
Query 177 CTCGGCGGCTTTCTCTCGCAACCGCTCTGTTTTCCAATCTCCAT-CGTCCG-TTTCGTCA 234
|||| |||||||||||||| | |||||||||||||||||||| | || || |||| ||
Sbjct 300 CTCGACGGCTTTCTCTCGCTATCGCTCTGTTTTCCAATCTCC-TGCG-ACGATTTCATCG 357
Query 235 GATCGATTCATTTCAACCTTCAATTTC-CATGATTCCGGTGACGCCGTCATCAATTGGTT 293
|||||||||||||| || ||||||||| | || |||||||||||| |||||| |||||||
Sbjct 358 GATCGATTCATTTCGACTTTCAATTTCTC-TGGTTCCGGTGACGCTGTCATCGATTGGTT 416
Query 294 GTTGCAATCTGTGGTTTCTAAGG-GTTATGAGTTACACAATGTCGCTGATGTTCTTGTTT 352
|||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||
Sbjct 417 GTTGCAATCTGTGGTTTC-GAGGAGTTATGAGTTACATAATGTTGCTGATGTTCTTGTTT 475
Query 353 CTCTTAATCACTTGCTTGCATTGTTGAATTCTTTCACATTTTCTCAATGGTGGGTGTTTA 412
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CTCTTAACCATTTGCTTGCATTGTTGAATTCTTTCACATTTTCTCAATGGTGGGTGTTTA 535
Query 413 TCATCGTTA-CATCGCTTTTAATTCGAGGAATCACAATTCCGGTTATGGTTGATATGCTT 471
||||||| | |||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 536 TCATCGT-AGCATCGCTTTTGATTCGAGGAATCACAGTTCCGGTTATGGTTGATATGCTT 594
Query 472 AACAACATTGCAAAGTTCTTTAAGAGTCTTCGCTCGCACCAAGGGGAGGTTCTAGACAAG 531
||||||||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 595 AACAACATTGCAAAGTTTTTTAAGAGTCTACGCTCGAACCAAGGAGAGGTTCTAGACAAG 654
Query 532 GTATCAATACTCAGTAAAAGTCGAGGAGTAATGTACACCATGTTGGAAAAGGAGTTTTTT 591
|||||| | || | ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 655 GTATCATTTCTTAATAAAAGTCGAGGAGTAATGTACACCATGTTGGAGAAGGAGTTTTTT 714
Query 592 GGAGTTAAAGGATCAGTCATTGGTCAGGGCATTCAAGTTCCTATCTTTTGGTTCTCAATG 651
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 715 GGAGTTAAAGGATCAGTCATTGGTCAGGGTATTCAAGTTCCTATCTTCTGGTTCTCAATG 774
Query 652 GGAGAGTT-AAGACAAAACATGGTTGAGATTCTTATGTCACGTCTTCGGGGTAAGATGTT 710
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 775 GGAGAGTTGAA-ACAAAACATGGTTGAGATTCTTATGTCACGTCTTCGGGGTAAGATTTT 833
Query 711 GTCGGCGGAATTGATCAAGAACGGAGTCTTAAGTAGAGGACGGTTAGTGGTGATCGTTGG 770
||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||
Sbjct 834 GTCGGCGGAATTGATCAAGAACGGAGTCTTAAGCAGAGGACGCTTAGTGGTGGTCGTTGG 893
Query 771 CGATGGATTCGGGCTTGAAATCCAAATGTTTGATCTTGATTTCTCTCTTATCTTGAGGCG 830
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 894 CGATGGATTCGGGATTGAAATCCAAATGTTCGATCTTGATTTCTCTCTTATCTTGAGGCG 953
Query 831 ACGTCAAGTCTCACAAAGCTACGTTTAATAAGTTTCGATTTCATTCAATAATTGGAGTGT 890
||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 954 TCGTCAAGTCTCGCAAAGCTA-----A-TAAGTTTCGATTTCATTCAATAATTGGAGCGT 1007
Query 891 TTTGCTTTTAGTGGCTCAATGGTGTTTATTTGATTATAGAGCCAGCACAAAATGTGAATA 950
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1008 TTTGCTTTTAGTGGCTCAATGGTGTTTATTTGATGATAGAGCCAGCACAAAATGTGAATA 1067
Query 951 AAGCGTGTTTGGTTGGATTCT 971
|||||||||||| ||||||||
Sbjct 1068 AAGCGTGTTTGGCTGGATTCT 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47571737209
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5