BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473830
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44960.1 | Symbols: | SNARE associated Golgi protein family... 1517 0.0
> AT1G44960.1 | Symbols: | SNARE associated Golgi protein family
| chr1:16999538-17001729 FORWARD LENGTH=1106
Length=1106
Score = 1517 bits (821), Expect = 0.0
Identities = 917/963 (95%), Gaps = 7/963 (1%)
Strand=Plus/Plus
Query 1 TTCTCTTCTGATCTCAAAGCTCCGTGATGAAGAAATGGTTAGCAATCGCCGCGACGGTGG 60
||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 13 TTCTCTTCTCATCTCAGAGCTCCGTGATGAAGAAATGGTTAGCAATCGCAGCGACGGTGG 72
Query 61 CGATAATTGCAATAATCGTGAGACAAGGCACGACTCAATACGGTTGGAACAAAGAGTCGG 120
||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| |||
Sbjct 73 CGATAATTGCAATAATCGTTAGACAAGGCACGACACAATACGGATGGAACAAAGAGGCGG 132
Query 121 CGTTGGAAAAGCTAAAGGAATGGTCAGATCGGCTCGGGATTTGGGCGATTCCGACGTATG 180
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 133 CGTTGGAAAAGCTAAAGGAATGGTCAGATCGGCTGGGGATTTGGGCGATTCCAACGTATG 192
Query 181 TAGCGGTACACACCGTAACATTAGCTCTTTGTCTCCCTCACGCCGTCTTTTTTGAAGCTG 240
||||||| ||||| |||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 193 TAGCGGTTCACACAATAACCTTAGCTCTTTGTCTCCCTCACGCCGTCTTCTTTGAAGCTG 252
Query 241 GTGCTTCTATACTCTTTGGTTTCCTTCCTGCTCTTCTCTGTGTTTTCTCCGCTAAAGTTC 300
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 253 GTGCTTCTATGCTCTTTGGTTTCCTTCCTGCTCTTCTCTGTGTTTTCTCTGCTAAAGTTC 312
Query 301 TCGCCGCTTCTTTCTCCTTCTGGATCGGCAGGTTTGTTTTTAAGAGTTCCACCAGAGCTA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 TCGCCGCTTCTTTCTCCTTCTGGATCGGCAGGTTTGTTTTTAAGAGTTCCACCAGAGCTA 372
Query 361 CAGGGTGGGCGCATAGAAACAAATACTTCAATATTCTCTCAAGAGGAGTTGAGCGAGATG 420
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 373 CAGGGTGGGCGCATAGCAACAAGTACTTCAATATTCTCTCAAGAGGAGTTGAGCGCGATG 432
Query 421 GTTGGAAGTTTGTTCTTCTAGCAAGGTTCTCGCCCATTCCTTCCTATGTCATAAACTACG 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 433 GTTGGAAGTTTGTTCTTCTTGCAAGGTTCTCGCCCATTCCTTCCTATGTCATAAACTACG 492
Query 481 CTTTGGCAGCCACAGAAGTCCGGTTTGTAGCTGATTTTCTGTTCCCCACGGTTATTGGCT 540
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 CTTTGGCAGCTACTGAAGTCCGGTTTGTAGCTGATTTTCTGTTCCCCACGGTTATTGGCT 552
Query 541 GCCTCCCGATGATCTTGCAGAACGCATCAGTCGGAAGCCTTGCTGGTATGGCTGTGGCTT 600
|||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 553 GCCTCCCGATGATCCTGCAGAACGCATCAGTCGGTAGCCTCGCTGGTATGGCTGTGGCTT 612
Query 601 CAGTAGCTGGAAAACAGAAAAGTCAGGTCTGGGGTTATGTTTTCCCAGTACTTGGGATAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 CAGTAGCTGGAAAACAGAAAAGTCAGGTCTGGGGTTATGTTTTCCCAGTACTTGGGATAC 672
Query 661 TGTCAAGTGTTCTGATTTCGTTGAGGATCAAAAAGTACTCAGCTGGAATTACAGAGACAT 720
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 673 TGTCAAGTGTTCTGATTTCATTGAGGATCAAAAAGTACTCAGCTGGAATTACAGAGGCAT 732
Query 721 CATCAGAGACCTCTGCTAACAGCTCTAGTTTAGCTTCATCATCTGAAACCT-CGAATCCC 779
||||||| ||||||||||||| |||||||||||||||||| | ||||| | ||||||||
Sbjct 733 CATCAGATACCTCTGCTAACAACTCTAGTTTAGCTTCATC-T--GAAAC-TGCGAATCCC 788
Query 780 ACTTATGGAACCGATGGATCCAAGAAAAGTGAGTGATGATACAAACCATGATGGTGGTTT 839
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 789 GCTTATGGAACCGATGGATCCAAGAAAAGTGAGTGATTATACAAACCATGATGGTGGTTT 848
Query 840 TTGATCGCTGGCAATACACTTTGTTTGGTTTGCAGCTATCAGATTCTCAACATCATGGCT 899
|||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 TTGATCGCCGGTATTACACTTTGTTTGGTTTGCAGCTATCAGATTCTCAACATCATGGCT 908
Query 900 TATTTTGGACGAATTAGGCAGTCTCTTAAAAGTAACAGAAT-ATTAGTTTTTGTAGTTCT 958
|||||||||||| ||||||||| |||||| ||||||| || ||||||||||||| ||||
Sbjct 909 TATTTTGGACGAGTTAGGCAGTATCTTAATAGTAACA-AAGCATTAGTTTTTGTACTTCT 967
Query 959 TAA 961
|||
Sbjct 968 TAA 970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48475951855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5