BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473834
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45010.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensi... 1123 0.0
> AT1G45010.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
domain containing protein | chr1:17013400-17015497 REVERSE
LENGTH=903
Length=903
Score = 1123 bits (608), Expect = 0.0
Identities = 670/701 (96%), Gaps = 0/701 (0%)
Strand=Plus/Plus
Query 1 ATCATATGGAGGAAGAACAAGTAAGAGCAATTAAGATAATAGTATTTGGAGTAATCTCAT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 90 ATCATATGGAGGAAGAACAAGTAAGAGCAATTAAGATAATAGTATTTGGAGTCATCTCAT 149
Query 61 GGGGTCTTGCCTTCATTCTCACTCGGAAAATCTTCTCTAGCTACTCATTCAGCTTCAGCA 120
||||| | |||||||||||||| |||| ||||||||| ||||||||||||||||||||||
Sbjct 150 GGGGTGTGGCCTTCATTCTCACCCGGAGAATCTTCTCAAGCTACTCATTCAGCTTCAGCA 209
Query 121 ACCGTCTTCTTTCCACGGCTCACGCGACAATCGCTGTCACTTTAGCAACACTCTCTGTTC 180
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 210 ACCGTCTTCTCTCCACGGCTCACGCGACTATCGCTGTCACTTTAGCAACACTCTCTGTTC 269
Query 181 AAGATTTGTCTTGCCCTGTTTGTCCCCTTGCTTCTAAGCCATCTCCTAAACAGATGGACG 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 270 AAGATTTGTCTTGCCCTGTTTGTCCCCTTGCTTCTAAGCCATCTCATAAACAGATGGACG 329
Query 241 TGATGGCGTTTTCGTTATCGTACATGATCTACGATCTTATATGTTGTCATTTCGATAAAG 300
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||
Sbjct 330 TGATGGCGTTTTCGTTGTCGTACATGATCTACGATCTAATATGTTGTCATTTCGATCAAG 389
Query 301 TGTTTAGCATTGATAATGCGGTTCATCATTTTGTTAGCATTCTTGGTTTTATAGCTGGAC 360
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 390 TGTTTAGCATTGATAACGCGGTTCATCATTTCGTTAGCATTCTTGGTTTTATAGCTGGAC 449
Query 361 TTGCTTACCAAAAGTCTGGATCTGAGATTGTGGCTACACTGTGGGTAGCAGAAATATCGA 420
|||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 450 TTGCATACCAAAAGTCTGGATCTGAGATCGTGGCTACACTGTGGGTAGCAGAGATATCAA 509
Query 421 GTCCTTTCTTCCACCTTAGGGAGATTCTCAAAGAGATTGGATACAAAGACACTAGCCTCA 480
||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 510 GTCCTTTTTTCCACCTTAGGGAGATTCTCAAAGAGATTGGATACAAAGACACCAAACTCA 569
Query 481 ATCTAGCCGCTGATGTGTGTTTTGCCACTATATTCACATTGGCGAGGATTGTGTGTGGAC 540
||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 570 ATCTAGCTGCCGATGTGTGTTTTGCCACTATATTCACATTGGCGAGAATTGTGTGTGGAC 629
Query 541 CTTTTCTTGTTTACGTCAGTCTATCAACTGATAATCCCATCTTCATCAAGGCAATGGGAT 600
|||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 630 CTTTCCTCGTTTACGTCAGTCTATCAGCTGATAATCCCATCTTCATCAAGGCAATGGGAT 689
Query 601 CAGGATTACAACTCGTGAGCATATTTTGGTTCTATAAAATCTTCGGAATGATGAGATATA 660
|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 690 CAGGATTACAACTCGTGAGCATCTTTTGGTTCTATAAAATTTTCGGGATGATGAGATATA 749
Query 661 AACTTTTTAAGAAGCCAAAGTCAAACAAAAAGTCTACTTAG 701
|||||||||||||||||||||||||||||||||||||||||
Sbjct 750 AACTTTTTAAGAAGCCAAAGTCAAACAAAAAGTCTACTTAG 790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5