BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473837
Length=2201
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45150.1 | Symbols: | unknown protein; Has 219 Blast hits t... 3393 0.0
> AT1G45150.1 | Symbols: | unknown protein; Has 219 Blast hits
to 202 proteins in 78 species: Archae - 0; Bacteria - 166;
Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes
- 17 (source: NCBI BLink). | chr1:17077448-17082503 REVERSE
LENGTH=2272
Length=2272
Score = 3393 bits (1837), Expect = 0.0
Identities = 2091/2212 (95%), Gaps = 24/2212 (1%)
Strand=Plus/Plus
Query 1 TGTTGTTTTGCTTCCTTTCACAAAGTTTCTCGCAAAACGCGATCGtctcttcttcttctt 60
|||| ||| ||||||||||||||| | ||||||||||||||||||||||| || ||||||
Sbjct 57 TGTTCTTTGGCTTCCTTTCACAAA-TCTCTCGCAAAACGCGATCGTCTCTCCTCCTTCTT 115
Query 61 cttcttcttcAATCCCTCACAAGTTTC-CTGCGACTTTCTCGGGAAA-C---aaaaaaaa 115
| | | || || | || ||| ||||||||||||||| ||| | ||||||||
Sbjct 116 C-AAGCCCTGAAAGAATCTCCAGATTCTCTGCGACTTTCTCGGAAAACCAAAAAAAAAAA 174
Query 116 TGGACAACAATGGAT-TGCAAGAGATGACTGTACCAGTAGAAGGAGTGGCTGGTGGAGGA 174
|||||||||||| || | |||||||||||||| |||||||||||||||||||||||||||
Sbjct 175 TGGACAACAATGTATCT-CAAGAGATGACTGTGCCAGTAGAAGGAGTGGCTGGTGGAGGA 233
Query 175 ACAGCTTATGGGTTTAATGATGCAGAGCCACTTAAACAATCTACGGATCCATCAGAGGTT 234
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 234 ACAGCTTATGGGTTTAATGATGCTGAGCCACTTAAACAATCTACAGATCCATCAGAGGTT 293
Query 235 CCAACTGCTGATTTGGTGAATGTTTGGTGTATGCCTAATACTGTTAATGTTGGTTCACAA 294
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 294 CCAACTGCTGATTTGGTGAATGTTTGGTGTATGCCTAATACAGTTAATGTTGGTTCACAA 353
Query 295 GAAACACCTCGTCCTCTAGAGCCTATAAATCTTTTGGCAGCTAGAAATGAGAGAGAAAGT 354
||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 354 GAAACACCTCGAGCTCTAGAGCCTATAAATCTTTTGGCGGCTAGAAATGAAAGAGAAAGT 413
Query 355 TTTCAGATCGCCATGCGCCCTAAAGTTTCTTGGGCTGCTTCCAGCCCTTCCGGGAGTGTT 414
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 414 TTTCAGATAGCCATGCGTCCTAAAGTTTCTTGGGCTGCTTCCAGCCCTTCCGGGATTGTT 473
Query 415 CAGGTTCAGTGCAATGACTTATGCTCCTCTGCTGGAGATAGATTGGTTGTTGGCCAGTCG 474
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 474 CAGGTTCAGTGCAGTGACTTATGCTCTTCTGCTGGAGATAGATTGGTTGTTGGCCAGTCA 533
Query 475 CTAAACTTGCGGCGAGTGGTGCCTGTCTTAGGTGTTCCTGATGCTTTGGTGCCCCTTGAT 534
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 534 CTAAAGTTGCGGCGAGTGGTGCCTGTCTTAGGCGTTCCTGATGCTTTGGTGCCCCTTGAT 593
Query 535 TTACCCGTTTCTCAACTTAGCTTATTTCCAGGAGAAACAAGTGTGATTTGGGTCTCAATA 594
|| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 594 TTGCCTGTTTCTCAACTTAGCTTATTTCCAGGAGAAACAAGTGTCATTTGGGTCTCAATA 653
Query 595 GACGTTCCTAATCGGCAGCCTCCTGGTCAATATGAGGGAGAGATCATTGTTTCTGCAATG 654
|||||||||| | |||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 654 GACGTTCCTACTGGGCAGCCTCCTGGTCAATATGAAGGAGAGATCATTATTTCTGCTATG 713
Query 655 AAAACTGATGGAGGCGGTTCTGCTCACTTGGGAAAGCATGAGAAAGATCAGCTATGTGTG 714
||||||||||||||||||||| ||||||||| |||||||||||| |||||||| ||||||
Sbjct 714 AAAACTGATGGAGGCGGTTCTTCTCACTTGGCAAAGCATGAGAAGGATCAGCTCTGTGTG 773
Query 715 GAACTTAATAACTGTCTTGATATTATGGAACCAATAGAGGGAAAACCCATGGATGAAGTG 774
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GAACTTAATACCTGTCTTGATATTATGGAACCAATAGAGGGAAAACCCATGGATGAAGTG 833
Query 775 GTAGAAAGAATAAAATGTGCAAGTTCGTCATTAAGAAGAATTATCTTCTCTCCATCATTT 834
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 834 GTAGAAAGAATTAAATGTGCAAGTTCGTCATTAAGAAGAATTCTCTTCTCTCCATCATTT 893
Query 835 TCGGAGTTCATTTCTACGAATGGATCAACCGATATGATGGAAGAAGATGTTGTTTCAAAC 894
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 894 TCGGAGTTCATTTCTACGAATGGATCAACTGATATGATGGAAGAAGATGTTGTTTCAAAC 953
Query 895 CTTTCGCTGCGTATCAAGCTAAGATTGACAGTTTGGGAATTTATTATTCCAGTGACTCCA 954
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 CTTTCACTGCGTATCAAGCTAAGATTGACAGTTTGGGAATTTATTATTCCAGTGACTCCA 1013
Query 955 TCACTCCCTTCTGTTATTGGCGTCTCTGACACTGTTATTGAGGATCGTTTTGGTGTTGAA 1014
||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1014 TCACTCCCTGCTGTTATTGGTGTCTCTGACACTGTTATTGAGGATCGTTTTGCTGTTGAA 1073
Query 1015 CGTGGAAGTGAAGAGTGGTACGAGAAATTGGATCTCCATTTTAAGTGGCTACTTCAGTAT 1074
| |||||||||||| |||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 1074 CATGGAAGTGAAGATTGGTACAAGAAATTGGATCTCCATTTTAAATGGCTTCTTCAGTAT 1133
Query 1075 CGGATCAGTCCATACTTTTGCAAATGGGGTGAAGGCATGCGTGTCTTGACATACACCTCA 1134
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1134 CGGATCAGTCCGTACTTTTGCAAATGGGGTGAAAGCATGCGTGTCTTGACATACACCTCA 1193
Query 1135 CCATGGCCTGCCGATCATCCAAAATCTGATGAATATCTCTCTGATCCAAGGCTTGCCGCT 1194
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1194 CCATGGCCTGCTGATCATCCAAAATCTGATGAATATCTCTCTGATTCAAGGCTTGCCGCA 1253
Query 1195 TATGCAGTACCGTATAGACAAGTTATAGCAGGGGATGATAT-ACGGGAAAGTTATCTGCG 1253
||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 1254 TATGCAGTACCGTATAGACAAGTTATAGCAGGGGATGAT-TCAAGGGAAAGTTATCTGCG 1312
Query 1254 AAAAGAAGTTGAGATACTGAGGAGTAAACCCCATTGGAAAAAAGCTTACTTTTACTTGTG 1313
||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1313 GAAAGAAGTTGAGATATTGAGAAGTAAACCCCATTGGAACAAAGCTTACTTTTACTTGTG 1372
Query 1314 GGATGAGCCACTGAATATGGAGCACTTTGACAGCGTTCGCAAGATGGCCAGTGAAATTTA 1373
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1373 GGATGAGCCACTGAATATGGAGCACTTTGACAACGTTCGCAAGATGGCCAGTGAAATTTA 1432
Query 1374 CGCCTATGCCCCGGATGCTCGTGTTTTGACTACATACTACTGTGGACCCGGTGATGCACC 1433
|||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1433 CGCCTATGCCCCGGATTCTCGTGTTTTGACTACATACTACTGTGGACCGGGAGATGCACC 1492
Query 1434 TCTTGCTCCGACACCTTTCGAATCTTTTGTCAAAGTTCCAAATCTACTTCGA-CCTCATA 1492
|||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| |||
Sbjct 1493 TCTTGCTCCGACACCTTTTGAATCTTTTGTCAAAGTTCCAAATCTCCTTCGACCCT-ATA 1551
Query 1493 CTCAGATATACTGCACAAGTGAGTGGGTGCTTGGAAACCGGGAGGATTTGGTGAAGGATA 1552
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1552 CTCAGATATACTGCACAAGTGAGTGGGTGCTTGGTAACCGGGAGGATTTGGTGAAGGATA 1611
Query 1553 TTGTTGAGGAATTGCAGACAGAGAATGGTGAGGAATGGTGGACGTACATATGCCTTGGAC 1612
|| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1612 TTCTTGACGAATTGCAGACAGAGAATGGTGAGGAATGGTGGACATACATATGCCTTGGAC 1671
Query 1613 CTTCAGATCCTCACCCAAATTGGCATCTGGGGATGCGTGGAACACAGCAACGGGCAGTGA 1672
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1672 CTTCAGATCCTCACCCAAATTGGCATCTGGGGATGCGTGGTACACAGCAACGGGCAGTGA 1731
Query 1673 TGTGGCGTGTGTGGAAAGAAGGTGGAACCGGGTTCTTGTACTGGGGTGCAAATTGCTATG 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 TGTGGCGTGTGTGGAAAGAAGGTGGAACCGGGTTCTTGTACTGGGGTGCAAATTGCTATG 1791
Query 1733 AGAAGGCAACGGTTCCAAGCGCCGAGGTAAAGTTCAGGCGCGGTCTTCCTCCTGGTGATG 1792
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1792 AGAAGGCAACGGTTCCAAGCGCCGAGGTAAAGTTTAGGCGCGGTCTTCCTCCTGGTGATG 1851
Query 1793 GAGTTCTTTACTACCCCGGTGAAGTTTTCTCATCTTCCTCAGAGCCCGTTGCTTCACTTA 1852
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1852 GAGTTCTTTACTACCCCGGTGAAGTTTTCTCATCTTCTTCAGAGCCAGTTGCTTCACTTA 1911
Query 1853 GGCTAGAGCGCCTTCTTAGTGGCTTACAGGATTATGAGTACTTAAAGCTGTATGAGTCAA 1912
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1912 GGCTAGAGCGCCTTCTTAGTGGCTTACAGGATTATGAGTACTTGAAGCTGTATGAGTCAA 1971
Query 1913 AATACGGAAGAGCAG-AAGCAATGGGGCTATTGGAGAAGACAGGGGTGTACACGGGGCCG 1971
|||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1972 AATACGGAAGAG-AGGAAGCGATGGGGCTATTGGAGAAGACAGGGGTGTACACGGGGCCG 2030
Query 1972 GAGCGATACACTTTGGAACATAGACCAATCGATGTATTGCGAGGAGAAGTGTACAACACA 2031
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2031 GAGCGCTACACTTTGGAACATAGACCGATCGATGTATTGCGAGGAGAAGTGTACAACACA 2090
Query 2032 TGTAGACCATCTTGAGTAACCAGATCGTTTTGTATCTACCTATACACACTCTAAGTTAGC 2091
|||||||||||||||||||||||||||||| ||||||| || | ||||||| ||||||
Sbjct 2091 TGTAGACCATCTTGAGTAACCAGATCGTTTAGTATCTA--TA-A-ACACTCTCGGTTAGC 2146
Query 2092 CCTAATTTAACAATAAAAGAACATAAGCA-GAAAACTCTAACAACGTCTAGATTGTCCAG 2150
||||| |||| ||||||||||||||| || |||||||||||||| ||||||||| ||||
Sbjct 2147 CCTAAGTTAATAATAAAAGAACATAA-CAAGAAAACTCTAACAATGTCTAGATTA-CCAG 2204
Query 2151 TGAAAAAGGTTAATTAGTATGAAAACAATAAAATAGATAGATT-GTCTTTGT 2201
||||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 2205 TGAAAAAGGTTAATTAGTATGAAAATAATAAAATAGATAGATTTG-CTTTGT 2255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109186185375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5