BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473842
Length=2411
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45180.1 | Symbols: | RING/U-box superfamily protein | chr1... 3254 0.0
AT5G42940.1 | Symbols: | RING/U-box superfamily protein | chr5... 407 3e-112
> AT1G45180.1 | Symbols: | RING/U-box superfamily protein | chr1:17098491-17101896
FORWARD LENGTH=2430
Length=2430
Score = 3254 bits (1762), Expect = 0.0
Identities = 2223/2441 (91%), Gaps = 50/2441 (2%)
Strand=Plus/Plus
Query 1 TCTCATTTGGTTTGTGTGcttcgctttcgctttcctcaattctcttcttcttc-ttcatt 59
||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 10 TCTCATTTGGTTTGTGTGCTTTGCTTTCGCTTTCCTCAATTCTCTTCTTCTTCATT-ATT 68
Query 60 tttgcctatttccctcttttctccgcaatcggtttcttctctcATTGTCTTT-A-G--CG 115
||||||| ||| ||||||||||| |||||||||||||||||||||||||||| | | |
Sbjct 69 TTTGCCT-TTTACCTCTTTTCTCTGCAATCGGTTTCTTCTCTCATTGTCTTTGACGAAAG 127
Query 116 --T-T-----T-----C-TTTGC--T-CTTTCTCAACCAAAACTTCCTCAGATCGATTTC 158
| | | | ||| | | |||||||||||| ||||| |||||||||| ||
Sbjct 128 AATCTACCCATAAGAGCGTTT-CTTTGCTTTCTCAACCATAACTTTCTCAGATCGA-TTG 185
Query 159 tttttttC-TGGGTTTGTTTGCAGCATTTTCTACATTGTGGAAAGTGGTGAGAGTCTCTT 217
||| ||| | | |||||| ||| |||| ||| |||||| |||||||||||||||||||
Sbjct 186 GTTTCTTCAAGCGATTGTTTCCAGGATTTGCTAGATTGTGAAAAGTGGTGAGAGTCTCTT 245
Query 218 GAATTGTCAAGTGTCAAACTGTGATTAACGCTAGGATGCAGGGAGAGAGGGCTGGTCTCG 277
|| |||||||||||| ||||||| |||||| |||||||||||||||||||||| |||| |
Sbjct 246 GATTTGTCAAGTGTC-AACTGTGGTTAACGATAGGATGCAGGGAGAGAGGGCTAGTCTTG 304
Query 278 GTTCTTTATCGGAGGCCTTGAATTTTGAGCATGGTTCTACATCTAGTAATGCTGTGATAG 337
|||||||||| |||| ||||| ||||||| |||||||| |||||||| |||||| |||
Sbjct 305 GTTCTTTATCAAAGGCTTTGAACTTTGAGCGCGGTTCTACGTCTAGTAACGCTGTGGTAG 364
Query 338 ATCAGCAGATTCGTTGGGAGAATATTCACAATTATGGTGATAATGAGTTGCAGGATTACA 397
||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 365 ATCAGCAAATTCGTTGGGAGAATCTTCACAATTATGGTGATAATGATTTGCAGGATTACA 424
Query 398 TGAGTTTAGGTGCTGATACGAATCCTGCTTTTGCAAACTCAGTTTATCATGAGCAACGGG 457
|||||| || ||||||||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct 425 TGAGTTCAGCTGCTGATACAAATCCTACTTTTGCAAACTCAGTTTATCATGAGAAACGGG 484
Query 458 GCTTACACAGGTTTAACATTGGTGAGGCTAGCTCTAGTGGTACGAAGAACGAAGCCACTA 517
|||| || |||||||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct 485 GCTTGCAGAGGTTTAACATTGGTGAGGCTAGCTCTAGTGGGACGAAGAACGAAGGGGCAA 544
Query 518 GTCACACTGAACAGTGGAAGGGAATTGGACGATTTGAGGAGCGGAGAAATGACAAGATTG 577
||| ||||||||| ||||||||||||||| | |||||||| | ||| ||||| ||| |||
Sbjct 545 GTCTCACTGAACAATGGAAGGGAATTGGAAGGTTTGAGGAACAGAGGAATGATAAGCTTG 604
Query 578 AGTTGAGCCCTTTGTTTGTGCAACCATCTAATGGAAGCCGTGTGGTTCGCAATGTCAATC 637
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 605 AGTTGAGCCCTTTGTTTGTGCAACCATCTAATGGAAGCCGCGTGGTTCGTGATGTCAATC 664
Query 638 TAAATGCTGAATATAATGAGCATCTTGAGGATATGAATCTGGTCACAGGTCATCCTGGTC 697
||||||| ||||| ||||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 665 TAAATGCAGAATACAATGAGCATCTTGAGGATATGAATCCGGTTACAGTTCATCCTGGTC 724
Query 698 ATTTTGAGGTTAATGGACTCAGGTCTGGGCTTTTACCAGAGAACGGTGGTGTCAGAGCGG 757
||||||||||||||||||| ||||||| | |||||| ||| ||| || || | ||||| |
Sbjct 725 ATTTTGAGGTTAATGGACTTAGGTCTGAGTTTTTACTAGATAACAGT-GT-T-AGAGCTG 781
Query 758 GTTCCTCTGTAGATGGGCGTCGTGCATCCTGTAAAAGAAAAGCTCTTGATGCAAGCATTG 817
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 782 GTTCCTCTGTTGATGGACGTCGTGCATCCTGTAAAAGAAAAGCTCTTGATGCAAGCGGTG 841
Query 818 GTCAGTCCTCTTCAAGC-GGAGGTTTCCGTGAGTTCCAGCATGGAGAATCCAGTTCTTGG 876
||||||||||||||| | |||||||||||||||||||||| ||||| |||||||||||||
Sbjct 842 GTCAGTCCTCTTCAA-CTGGAGGTTTCCGTGAGTTCCAGCGTGGAGTATCCAGTTCTTGG 900
Query 877 ATCTCAGCTCCTGCGTATTATAGCCAACCAATGGCAGCAAATGATTTAAACATATCTCTT 936
||||||| |||| ||||||| |||| | ||||| ||||||||||||||||||||||||||
Sbjct 901 ATCTCAGGTCCTACGTATTACAGCCCAGCAATGACAGCAAATGATTTAAACATATCTCTT 960
Query 937 GATCATGGTCGAAGGGGTTTGGTATCTGGCGCTGTTCCAAATCTATCTGCTCCTGGCATC 996
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 961 GATCATGGTCGAAGGGGTTTGGTATCTAGCGCTGTTCCAAATCTATCTCCTCCTACCATC 1020
Query 997 ACAGAGAGCTCTAGTAGAAATTACTCTGTCTGGGTTAATCCCGCAGATCAACAAGAAACT 1056
|||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 1021 ACAGAGAGCTCTAGTAGAAATTACCCTGTCTGGGTTAATCCCACATATCAACAAGAAACC 1080
Query 1057 GTAAGCAGGAAGTGTTTTGCTCCATCCTTGAACTCACCAGGGCTTCTACCAGCAGATCAA 1116
|||||| || ||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1081 GTAAGC---AA---TTTTGCTCCATCCTTGAACTCACCAGGGCTTATACCTGCAGATCAC 1134
Query 1117 CAACTGATCGA-CTTGAGATATGGACATGCTTTAGGCAATTTTGCTTCTCAGAACCCAAA 1175
|| | |||| | | |||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1135 CAGCAGATC-AGCATGAGATATGGACATGCGTTAGGCAATTTTGCATCTCAGAACCCAAA 1193
Query 1176 TGCTCCTGCAACTCATATGCCCCCTGTTTCTAGAAATACATTTCAATGGAACGCTAGCCC 1235
||||||||| |||||||||||||||||||| ||||||||||||||||||||| | |||||
Sbjct 1194 TGCTCCTGCTACTCATATGCCCCCTGTTTCAAGAAATACATTTCAATGGAACACAAGCCC 1253
Query 1236 AGTGGCAGCGGGTT-TATCATCGAGTTCTGCTACTCCTGTTGACAGAAATGTTATTCATC 1294
|||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1254 CGTGGCAGC-GGTTATATCATCTAGTTCTGCTACTCCTGTTGACAGAAATGTTATTCATC 1312
Query 1295 GAGATGAAACCAGACACAGAAGTAATAGTCTAGAGATTCCCTTGTTTGTCCCAGCTCCTG 1354
|| ||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1313 GAAATGCAACCAGACAAAGAAGTAATACTCTAGAGATTCCCTTGTTTGTCCCAGCTCCTG 1372
Query 1355 AACTGAGAAATGTGGCGCATGGTCATATTAACAGAAATGCAAGTGGTGCTAGACATGTTG 1414
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1373 AACTGAGAAATGTGGCCCATGGTCATATTAGCAGAAATGCAAGTGGTGCTAGACATGTTG 1432
Query 1415 CATCGTCTTCATCCAGGACAAGTGTTCAGCCATCACCGTCTAGTCCAGCATTGAATCCTT 1474
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1433 CATCGTCTTCATCCAGGACAAGTGTTCAGCCATCACCGTCTAGTCCAGCATTGACTCCTT 1492
Query 1475 ACCAGAATAACTCACCACATAATCAAAGAAGATTATCTGAACACTTTCGTAGGTCATTGC 1534
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1493 ACCAGAATAACTCACTACATAATCAAAGAAGATTATCTGAAAACTTTCGTAGGTCATTGC 1552
Query 1535 TTTCTTCCCTTGCTACACACCAGAGAGCTGCTCATTCCTTGGTCCC-TCCTTCCTCTCCG 1593
|||||||||||| |||||| ||||| ||||||| ||| |||| ||| |||| |||||||
Sbjct 1553 TTTCTTCCCTTGTTACACAGCAGAGGGCTGCTCGTTCATTGG-CCCATCCTGCCTCTCCA 1611
Query 1594 GATGAGCATGTGCTTCAATCTGGTGGTGTTAACACCTCTCAGGTGCATAATCGGGCTTCC 1653
||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1612 AATGAGCACGTGCTTCAATCTGGTGGTGATAACACCTCTCAGGTGCATAATCGAGCTTCC 1671
Query 1654 TCGAGAGCAGGTCCAAGGCAAGGGCAAAATGCAACTGGCATTCCTCATTCTTTGCGAGGC 1713
||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1672 TCGAGAGCAGGTCCAAGACAAGGGCAAGATGCAACTGGCATTTCTCATTCTTTGCGAGGC 1731
Query 1714 TTGGCATCCACAAGTCGAGGAAGAAGCAGAATGGGGGCAGCCGAGATCCGTAATGTCTTG 1773
||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||
Sbjct 1732 TTGGCATCCACAAGTCGAGGAAGAACCAGAATGGGGGCATCCGAGATCCGTAACATCTTG 1791
Query 1774 GAGCACATGCGTAGAGCAGGGAACTTGCGTTTTGAGGATGTTATGCTTCTCAATCAGTCA 1833
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1792 GAGCACATGCGTAGAGCAGGGAACTTGCGTTTGGAGGATGTTATGCTTCTCAATCAGTCC 1851
Query 1834 ATGGCGCTAGGTGTGGCTGATATTCATGACCGATATAGAGACATGCGACTTGATGTTGAC 1893
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 ATAATGCTAGGTGCGGCTGATATTCATGACCGATATAGAGACATGCGACTTGATGTTGAC 1911
Query 1894 AACATGACATATGAGGAGTTGTTGTCTCTAGAAGAGCGGATTGGAGATGTTTGTACCGGT 1953
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1912 AACATGACATATGAGGAGCTGTTGTCTCTAGAAGAACGGATTGGAGATGTTTGTACCGGT 1971
Query 1954 TTGAATGAGGAAACCATATCAAACCGATTGAAGCAACAGAAGTACAAAAGTAGTACCAGT 2013
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1972 TTGAACGAGGAAACCATATCAAACCGATTGAAGCAGCAGAAGTACAAAAGTAGTACTAGA 2031
Query 2014 TCTCCTCAAGAAGTAGAACCATGCTGTATTTGTCAGGAGGAATACAAGGAAGGAGAAGAT 2073
||| | ||||||||||||||||||||| |||||||||||||||| ||||||| ||||||
Sbjct 2032 TCTTCACAAGAAGTAGAACCATGCTGTGTTTGTCAGGAGGAATATAAGGAAGAAGAAGA- 2090
Query 2074 AA-AGGAATGTTGGAGTGCGGGCACGACTTCCATAGCCAATGCATCAAAGAATGGCTGAA 2132
|| ||||| | |||| || || |||||||| ||||| |||||||||||||||||||||||
Sbjct 2091 AATAGGAAGGCTGGAATGTGGACACGACTTTCATAGTCAATGCATCAAAGAATGGCTGAA 2150
Query 2133 GCAGAAGAATCTTTGCCCCATTTGCAAAACCACAGGATTAAACACTGCAGATAAGCCA-A 2191
|||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| |
Sbjct 2151 GCAGAAGAATCTTTGCCCGATTTGCAAAACAACAGGATTAAACACTGCAAATAAGCCACA 2210
Query 2192 GAAGATAATGATCGAAAGACTGTTGGGTTCTAACCATTTGTCGAATCTTCAATACCATCG 2251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2211 -AAGATAATGATCGAAAGACTGTTGGGTTCTAACCATTTGTCGAATCTTCAATACCATTG 2269
Query 2252 CAGCCTCATCAGAACACTGCAGGCAAGTTGGTGTCTGCGTTTGGGGTTGACTGAAGATAG 2311
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2270 AAGCCTCATCAGAACACTGCAGGCAAGTTGGTGTCTGCTTTTGGGGTTGACTGAAGATAG 2329
Query 2312 GAATGAAGGGAA-GTAACTGAGGGAGATAGAGAGAAAAGGAGAACCTGAGAAAAAACTTG 2370
|||||||||||| ||||||||||| ||||||||||| |||||||||| |||||||||||
Sbjct 2330 GAATGAAGGGAAAGTAACTGAGGGGGATAGAGAGAACAGGAGAACCTAAGAAAAAACTTT 2389
Query 2371 GGTTCTTCTGAATTTGTTTGGATAAGTTAATTTTACCAATT 2411
||||||||||||||| ||| ||||||||||||||||||||
Sbjct 2390 GGTTCTTCTGAATTTATTTCTATAAGTTAATTTTACCAATT 2430
> AT5G42940.1 | Symbols: | RING/U-box superfamily protein | chr5:17216330-17220490
REVERSE LENGTH=2611
Length=2611
Score = 407 bits (220), Expect = 3e-112
Identities = 505/637 (79%), Gaps = 41/637 (6%)
Strand=Plus/Plus
Query 1569 TTCCTTGGTCCCTCCTTCCTCTCCGGATGAGCATGTGCTTCAATCTGGTGGTGTTAACAC 1628
||| |||| ||||||| ||||| |||||| || ||||||||| ||||||||| ||| |
Sbjct 1644 TTCGTTGGCCCCTCCTGCCTCTTCGGATGGGCTTGTGCTTCAGCCTGGTGGTGATAATA- 1702
Query 1629 CTCTCAGGTGCATAATCGGGCTTCCTCGAGAGCAGGTCC--------A-AGGCAAGGGCA 1679
|||| ||||||||||||||| ||||||||||||||| | ||||||||| |
Sbjct 1703 --GTCAGATGCATAATCGGGCTTACTCGAGAGCAGGTCCGTTGTTTGATAGGCAAGGGGA 1760
Query 1680 AAATGCAACTGGCATTCCTCATTCTTTGCGAGG-CTTGGCATCCACAAGTC-GAGGAAGA 1737
| || ||| ||||||||| ||||||| || ||||||| | |||| | ||||||||
Sbjct 1761 TAGTGTGGTTGGTATTCCTCATCCTTTGCG-GGCCTTGGCAGCTGCAAG-CAGAGGAAGA 1818
Query 1738 AGCAGA---ATGGGGGCAGCCGAGAT-CCGTAATGTCTTGGA-GCACATGCGTA--GA-G 1789
|||||| |||| | | || |||| | | ||||||||||| | |||||||| || |
Sbjct 1819 AGCAGACTTATGGTGTC--CC-AGATGCAG-AATGTCTTGGATG-TCATGCGTAGGGATG 1873
Query 1790 C-----A-GGGAACTTGCGTTTTGAGGATGTTATGCTTCTCAATCAGTCAATGGC-GCTA 1842
| | |||||||| ||||||| ||||||||||| ||||| ||| | | |
Sbjct 1874 CTAATAATAACAACTTGCGGCTTGAGGACGTTATGCTTCTAAATCACTCAGT-ACTATTT 1932
Query 1843 GGTGTGGCTGA-TATTCATGACCGATATAGAGACATGCGACTTGATGTTGACAACATGAC 1901
| || |||| | | ||||||||| ||||||||||||||||||||||| ||||||||| |
Sbjct 1933 GATGGGGCT-ACTGGTCATGACCGGTATAGAGACATGCGACTTGATGTGGACAACATGTC 1991
Query 1902 ATATGAGGAGTTGTTGTCTCTAGAAGAGCGGATTGGAGATGTTTGTACCGGTTTGAATGA 1961
||||||||| |||||| | ||||||||||||||||||||||||||||||||| | || ||
Sbjct 1992 ATATGAGGAATTGTTGGCACTAGAAGAGCGGATTGGAGATGTTTGTACCGGTGTAAACGA 2051
Query 1962 GGAAACCATATCAAACCGATTGAAGCAAC-AGAAGTACAAAAGTAGTACCAGTTCTCCTC 2020
|||||||||||||||||| || ||||||| | || |||||||| | || | ||||| |
Sbjct 2052 GGAAACCATATCAAACCGGTTAAAGCAACGAAAA-TACAAAAGCAACACAAAATCTCCAC 2110
Query 2021 AAGAAGTAGAACCATGCTGTATTTGTCAGGAGGAATACAAGGAAGGAGAAGATAAAGGAA 2080
|||| | ||| ||||||||| |||||||||||||||||| ||||||||||| | || |
Sbjct 2111 AAGATGCAGAGCCATGCTGTGTTTGTCAGGAGGAATACACCGAAGGAGAAGACATGGGGA 2170
Query 2081 TGTTGGAGTGCGGGCACGACTTCCATAGCCAATGCATCAAAGAATGGCTGAAGCAGAAGA 2140
| || || ||||| || ||||||||||||||||| |||||||||||||| |||||||
Sbjct 2171 CACTAGAATGTGGGCATGAATTCCATAGCCAATGCATTAAAGAATGGCTGAAACAGAAGA 2230
Query 2141 ATCTTTGCCCCATTTGCAAAACCACAGGATTAAACAC 2177
|||||||||| || ||||| || ||||| || |||||
Sbjct 2231 ATCTTTGCCCAATCTGCAAGACTACAGGCTTGAACAC 2267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119728299825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5