BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473846
Length=1931
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45207.2 | Symbols: | Remorin family protein | chr1:1713035... 2737 0.0
> AT1G45207.2 | Symbols: | Remorin family protein | chr1:17130351-17133548
REVERSE LENGTH=2020
Length=2020
Score = 2737 bits (1482), Expect = 0.0
Identities = 1803/1955 (92%), Gaps = 33/1955 (2%)
Strand=Plus/Plus
Query 1 ATGCCGTCGGAGTTATCGTACAAAGTCCACCGTCCGGCGAAATCCGGAGTATCTCGACGA 60
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGCCGTCGGAGTCATCGTACAAAGTCCACCGTCCGGCGAAATCCGGAGGATCTCGACGA 60
Query 61 GACTCAAGCCCCGACTCTATAATCTTCACACCGGAATCAAATCTCAGTCTCTTCTCTTCC 120
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 61 GACTCAAGCCCCGACTCAATAATCTTCACACCTGAATCTAATCTCAGTCTCTTCTCCTCC 120
Query 121 GCTTCCGTCAGTGTCGATCGTTGCTCTTCCACCTCCGACGCTCACGACC--G-TGACTCT 177
||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 121 GCTTCCGTCAGCGTCGATCGTTGCTCTTCCACCTCCGACGCTCACGACCGGGACGACTCT 180
Query 178 CTCATCTCCGCTCCTTCTCTGGAGCGAGATCAGAGGGTAAGTTCAAGCTGCAAAGATCTA 237
|||||||||| ||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 181 CTCATCTCCGGTCCCTCTCTGGAGCGAGATCAGAGGGTAAGTTCGAGCTGTAAAGATCTA 240
Query 238 GATCTAGACAAGCGTGGTACAGGGTGGAAGAATAGTTTTAACTCTAGAAAATCAAATAAA 297
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 GATCTAGACAAGCGTGGTACAGGGTGGAAGAATAGTTGTAACTCTAGAAAATCAAATAAA 300
Query 298 GTAAAAGCAGCTTGGAAAGAGGAGTTTGAGGTGAATAAGGATGATGAGAGCCAGAATCTT 357
|||||||||||||||||||||||||||||||| || || |||||||| ||||||||||||
Sbjct 301 GTAAAAGCAGCTTGGAAAGAGGAGTTTGAGGTTAAAAAAGATGATGAAAGCCAGAATCTT 360
Query 358 GATTCAGCTAGGAGTTCTTTCTCTGTAGCTCTTAGAGAATGTCAGGAACGAAGATCTAGA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATTCAGCTAGGAGTTCTTTCTCTGTAGCTCTTAGAGAATGTCAGGAACGAAGATCTAGA 420
Query 418 ACTGAAGCGCTGGCGAAAAAGTTAGATTACCAAAGGACTGTTTCGTTGGATCTTAGTAAT 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTGAAGCGCTGGCGAAAAAGTTAGATTACCAAAGGACTGTTTCGTTGGATCTTAGTAAT 480
Query 478 GTAACCTCTTCGTCTCCGCGAGTGGTGAATGTTAAGAGAGCTTCAGTTTCAACTAATAAA 537
||||||||| ||||||| ||||||| ||||| |||||||||||||||||||||||||||
Sbjct 481 GTAACCTCTACGTCTCCAAGAGTGGTAAATGTGAAGAGAGCTTCAGTTTCAACTAATAAA 540
Query 538 TCGAGTGTGTTTCCTAGTCCTGGTACTCCGACTTATCTGCATAGTATGCAAAAGGGTTGG 597
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 TCGAGTGTGTTTCCTAGTCCTGGTACTCCGACTTATCTACATAGTATGCAAAAGGGTTGG 600
Query 598 AGTTCAGAAAGAGTAGCTTTACGTTCAAACGGAGGAAGAAGTCCGCCCAATGCTGGTTTT 657
|||||||| |||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 601 AGTTCAGAGAGAGTACCTTTACGTTCAAACGGAGGAAGAAGTCCGCCAAATGCTGGGTTT 660
Query 658 TTACCTTTGTATAGTGGTAGAACGGTTCCTTCTAAGTGGGAAGATGCAGAGAGATGGATA 717
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 TTACCTTTGTATAGTGGTAGAACGGTTCCTTCTAAGTGGGAAGATGCGGAGAGATGGATA 720
Query 718 GTTAGTCCTCTTGCTAGGGAAGGAGCTGCCCGAACTTCATTTGGAGCATCGCATGAAAGG 777
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 721 GTTAGTCCTCTTGCTAAGGAAGGAGCTGCCCGTACTTCATTTGGAGCATCGCATGAAAGG 780
Query 778 CGACCTAAAGCAAAGAGTGGTCCGTTAGGACCTGCAGGATTTGCATATCATTCTTTGTAT 837
||||||||||||||||||||||| ||||| ||| |||||||||||||| |||| ||||||
Sbjct 781 CGACCTAAAGCAAAGAGTGGTCCATTAGGTCCTCCAGGATTTGCATATTATTCGTTGTAT 840
Query 838 TCGCCTGCGGTTCCTATGGTTCATGGTGGGAACATGGGCTTCTTAACAGCTAGCTCTCCA 897
|| ||||| |||||||||||||||||||| |||||||| ||||||||| ||||||||
Sbjct 841 TCCCCTGCAGTTCCTATGGTTCATGGTGGAAACATGGGAGGCTTAACAGCAAGCTCTCCG 900
Query 898 TTTTCAGCTGGTGTGTTGCCAGAAACTGTCTCTTCTCGGGGTTCTACTACAACAGCCTTC 957
||||||||||||||||||||||||||||| |||||| ||||||| |||||| | |||||
Sbjct 901 TTTTCAGCTGGTGTGTTGCCAGAAACTGTTTCTTCTAGGGGTTCCACTACAGCTGCCTTT 960
Query 958 CCACAACGGACCGATCCTTGCATGGCTAGATCAGTTAGCATTCATGGCTGCTCTGAAACA 1017
|| || || | |||||| | |||||| |||||||||||||||||||||||||||||||||
Sbjct 961 CCTCAGCGAATCGATCCATCCATGGCGAGATCAGTTAGCATTCATGGCTGCTCTGAAACA 1020
Query 1018 CTTGTACCCTCATCCCAAGATGACATCCATGAAAGTATTAAGGATGCTGCTACTGATCCT 1077
|||| | | ||||||||||||||||||||||||||||| |||||||||||||| ||| ||
Sbjct 1021 CTTGCATCTTCATCCCAAGATGACATCCATGAAAGTATGAAGGATGCTGCTACCGATGCT 1080
Query 1078 CAAGCTGTCTCAAGAAGGGATATGGCAACCCAGATGAGTCCCGAGGGAAGCATTCGCTTT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1081 CAAGCTGTCTCAAGAAGGGATATGGCAACCCAGATGAGTCCCGAGGGAAGCATCCGGTTT 1140
Query 1138 TCCCCTAATCGACAGTGTTCGTTCTCTCCCTCCTCTCCATCAGCACTACCTATTTCAGAA 1197
|||||| | |||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1141 TCCCCTGAGAGACAGTGTTCGTTCTCTCCCTCCTCTCCATCACCACTACCTATTTCGGAA 1200
Query 1198 CTACTTAATGCTCATTCCAACCGAGCAGAAGTCAAGGACTTAAAGGTTGATGAGAAGGTA 1257
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1201 CTACTGAATGCTCATTCCAACCGAGCAGAAGTCAAGGACTTACAGGTTGATGAGAAGGTA 1260
Query 1258 ACTGTAACTCGCTGGTCAAAGAAGCACAGAGGTCTGTACCATGGAAATGGCTCAAAAATG 1317
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1261 ACCGTAACTCGCTGGTCAAAGAAGCACAGAGGTCTATACCATGGAAATGGCTCAAAAATG 1320
Query 1318 CGAGATCACTTGCATGGAAAAGCTAGGGACCCTCAAGATTTCACATGCGCCACAGAAGAA 1377
||||||||| | ||||||||||||| ||| | ||||||| ||||| || ||||| |||
Sbjct 1321 CGAGATCACGTACATGGAAAAGCTACTAACCATGAAGATTTGACATGTGCGACAGAGGAA 1380
Query 1378 GCTAGAATCATATCTTGGGAAAATTTGCAGAAAGCTAAGGCGGAGGCAGCAATAAGAAAG 1437
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1381 GCCAGAATTATATCTTGGGAAAATTTGCAGAAAGCTAAGGCCGAGGCAGCAATAAGAAAG 1440
Query 1438 CTAGAGAAATATTTTTCACAGATGAAATTGGAAAAGAAAAGATCATCGTCAATGGAAAAG 1497
|||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1441 CTAGAGAAATATTTCCCACAGATGAAGCTGGAAAAGAAAAGATCATCGTCGATGGAAAAG 1500
Query 1498 ATTATGAGAAAAGTGAAATCAGCAGAAAAGAGAGCGGAGGAGATGAGGAGGTCGGTGATA 1557
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1501 ATTATGAGAAAAGTAAAATCAGCAGAGAAGAGAGCGGAGGAGATGAGGAGGTCGGTGTTA 1560
Query 1558 GACAATCGAGTCTTAACCGCATCCCATGGTAAAGCTTCATCTTTCAAAAGAAGTGGGAAG 1617
|||||| |||||| ||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 1561 GACAATAGAGTCTCAACCGCATCTCATGGTAAGGCTTCATCATTCAAAAGAAGTGGGAAG 1620
Query 1618 AAGAAGCTTCCTTCTCTTAGTGGTTGCTTCACCTGCCATGTATTCTAGTTGCCCTTTTTC 1677
|||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 AAGAAGATCCCTTCCCTTAGTGGTTGCTTCACCTGCCATGTATTCTAGTTGCCCTTTTTC 1680
Query 1678 GAAGAAAAATACGGTAAATGGAGACTCTTCACTGATGCGTACGCTTAATATTTGG-TA-C 1735
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 1681 GAAGAAAA-TACGGTAAATGGAGACTCTTCACTGATGCGTACGCGTAATATTTGGCTTTC 1739
Query 1736 T--TT--TG-----A-TAG--CT----A-A-T-AG---CTGTTAATTGATTTTGAATACA 1773
| || || | || || | | | || |||||||||||||| |||| |
Sbjct 1740 TAATTCCTGCTTGTAATACTACTTTCGATAGTCAGTAGCTGTTAATTGATTTC-AATAGA 1798
Query 1774 TGCGCTTAGTACATTTGTATGTTAGTTCTTAGTTGAGTAAAATCCGAGGGATGAGTCCAC 1833
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1799 TGCGCTTAGTACATTTGTATGTTAGTTCCTAGCTGAGTAAAATCCGAGGGATGAGTCCAC 1858
Query 1834 CCCTTTCCACCTTTGTTGGCCCGCCCCGGGGTGTTTAGAGGTGAATTGATCCCTTGAGAG 1893
|| |||||||||||||||| | | |||| |||||||||||||||||||||| ||||
Sbjct 1859 CCATTTCCACCTTTGTTGGTCT-CTTCGGG-TGTTTAGAGGTGAATTGATCCCA--AGAG 1914
Query 1894 GACAAAATCTTCTTGACAAAATGTATTTGTAATTT 1928
|||||| ||||||||| ||||||||||||||||||
Sbjct 1915 GACAAACTCTTCTTGATAAAATGTATTTGTAATTT 1949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95632038225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5