BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473847
Length=1651
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45231.2 | Symbols: | S-adenosyl-L-methionine-dependent met... 1947 0.0
> AT1G45231.2 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:17147837-17151194
REVERSE LENGTH=1799
Length=1799
Score = 1947 bits (1054), Expect = 0.0
Identities = 1470/1656 (89%), Gaps = 87/1656 (5%)
Strand=Plus/Plus
Query 1 ATGGGAAAGGTCACAGGCAAAGTAGAAGAAGAAGAAGGTGAAGCTATTGAAGCTCTGGGT 60
||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAAGGTCAGAGGCGAAGTAGAAGAAGCAGAAGGTGAAGCTATTGAAGCTCTGGGT 60
Query 61 TCTCTCTTCAAGCTTACTCAAATCCATCTATGGGTCGATACAGATACTCCTCTCTTCCAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCTCTTCAAGCTTACTCAAATCCATCTATGGGTCGATACAGATACTCCTCTCTTCCAT 120
Query 121 GAACACAGTGGTATATCCCCAAACAAGAGTG-T--TGATGGAATTACCAAC-ATGGGATT 176
|||||||||||| | | | || || | | |||||||| ||||| || |||||
Sbjct 121 CAACACAGTGGTA-A-CAAGAGTGTTGA-TGATACTTATGGAATTGCCAACAAT-GGATT 176
Query 177 GATGAAAGAGATGAATGATCTTGGTCTTCCTGTTTCCTTTCGAGCAAGCAA--A---G-A 230
|||||||||||||||||||||||||||||| |||||||||||| ||| ||| | | |
Sbjct 177 GATGAAAGAGATGAATGATCTTGGTCTTCCGGTTTCCTTTCGAACAAACAAGCAGTGGAA 236
Query 231 GAACAGAACAAGAGGCTATCAAAAGAAAGGAATCAAGGATCGATTAGACGACGAGGTTAA 290
||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 237 GAACAGAACTAGAGGCTATCAAAAGAAAGGATTCAAGGATCGATTAGACGAAGAGGTTAA 296
Query 291 TGTTATTCTCAAAGAAGAAGAAGAAGGCAAGGATGTAGCATCCAATGTAGTTTTGGTGTC 350
|||||||||| | ||| ||||| | | | | | || | |||||||||
Sbjct 297 TGTTATTCTC--A-AAGTAGAAG-A--C--------A-C-T---TTG-A-ATTTGGTGTC 335
Query 351 TGATTTGAAGACTCCAGGTGAGGAGGGTGACA-TACCGTCTTTGGAGGACA-ATTGTGTT 408
|| ||| || | |||||||| ||| | | |||| ||| ||||| | |||||||
Sbjct 336 TGCTTT---GA----A--TGAGGAGGTTGAGAGT-CCGTGTTTTGAGGA-AGATTGTGTA 384
Query 409 CAAATAATTGTAGTCGAAGAAGAAAATCATGAAGTTGTTGTAGAGAGATGTGTTTTGGGA 468
||| |||||| ||| |||||||||||||||||||||||||| | ||| ||| ||||||||
Sbjct 385 CAAGTAATTGAAGTGGAAGAAGAAAATCATGAAGTTGTTGTGGGGAGCTGTTTTTTGGGA 444
Query 469 AATGGAGATGGAGACTCAGTGTTGGCATCAGAGAGAAGAGATTCTCATGACTCTAATGAA 528
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |
Sbjct 445 AATGGAGATGGAGACTCAGTGTTGGCATCAGAGACAATAGATTCTCATGACTCTAGTGTA 504
Query 529 TGGAAAGTCTACTGGGATTCGTTCTATGGACGAAGTTATTTTTACAATGTTAAGACACAA 588
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 505 TGGAAGGTCTACTGGGATTCGTTCTATGGACGAAGTTATTTTTACAATTTTAAGACACAA 564
Query 589 GAGTCCACATGGGAGCCGCCACTTGGGATGGAGCATCTAGCTTATAGCGATGAAAGCCAT 648
||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 565 GAGTCAAAATGGGAGCCGCCACTTGGGATGGAGCATCTAGCTTATAGCGATGAAAGTCAC 624
Query 649 AACTTGAATGAATTGGTTATAGAGACAACAGAGAAGCATCATGATGACTTGTGTGAAACT 708
||||||| |||||||| | | | ||||||||||||||||||| | ||| ||
Sbjct 625 AACTTGAGTGAATTGG---T-----C-ATAGAGAAGCATCATGATGAC-T-TGT----CT 669
Query 709 GGACCTGACGATGATGTTCCCGTTGAAAGAGCTGATGATGTTCCCGCTGAAAAAGCTGAT 768
||| || || || | || | || |||||||||||| ||| ||||||||
Sbjct 670 GGA----AC--TG-TG----C-TT----G-GC-GATGATGTTCCCTTTGACAAAGCTGAC 711
Query 769 GATCTTGTTGGAGTTTGTCAACGTCAATTTGAAACAGAAGCCACAGAGGAAGTTAACAGT 828
||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 712 GATCTTGGTGGAGTTTGTCAAAGTCAACTTGAAGCAGAAGCCACAGAGGAAGTTAACAGT 771
Query 829 TTGATTGATACATGCCAAGAAACTTCCATTGGGAATCAATCTTTGGATATTACTACTCTT 888
||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 772 TTGATTGATACATACCAAGAAACTTCCATTGGAAATCAATCTTTGGATATTACTAGTCTT 831
Query 889 GATAAAGAGGGAAACGGTGCATATGTTGTCAGTTCCGTTAGGAAGTCTAAGAAAGAGTCG 948
| | ||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 832 GGTGAAGAGGGAACCGGTGCATATGTTGTCAGTTCCGTTAGAAAGGCTAAGAAAGAGTCT 891
Query 949 AGAAGATCTCGAGCCAAAAAGAAATTACTCAATTCGTATACAGGGACTGGAATGAAAGGT 1008
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 892 AGAAGATCTCGAGCCAAAAAGAAATTACTCAATTCGTACACAGGGACTGAAATGAAAGGT 951
Query 1009 GTTCTTGAAGAATATTCTGCAACCCTTGGCAAGTATTGGTGCCAAAGATACCTCCTCTTC 1068
|||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 952 GTTCCTGAAGAATATTCTCCAATCCTTGGCAAGTATTGGTGCCAAAGATACCTCCTCTTC 1011
Query 1069 TCCAGATTTGATGAAGGCATCAAAATGGATGAGGAAGGATGGTTTTCTGTAACTCCTGAA 1128
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1012 TCCAGATTTGATGAAGGCATCAAGATGGATGAGGAAGGATGGTTTTCTGTCACTCCTGAA 1071
Query 1129 CCTATAGCTAAGCATCATGCCACTCGCTGTAACGAAGGCATAGTCATTGACTGTTTTACA 1188
| ||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1072 CTTATAGCTAAACATCATGCCACACGCTGTAATGAAGGCATAGTCATTGACTGTTTTACA 1131
Query 1189 GGAGTTGGTGGAAATGCTATTCAGTTCGCATCAAGGAGTCACTATGTGATTGCAATTGAT 1248
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GGAGTTGGTGGAAATGCTATCCAGTTCGCATCAAGGAGTCACTATGTGATTGCAATTGAT 1191
Query 1249 TTGGATCCAAAGAAACTTGATTTAGCACAGCATAATGCTGCCATATATGGTGTTGCGGAT 1308
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1192 TTGGATCCAAAGAAACTTGATTTAGCAAAGCATAATGCTGCCATATATGGTGTTGCTGAT 1251
Query 1309 AAAATCGACTTTGTGAAGGGAGATTTCTTTGACTTGGCGCATGACTTGAAGGCAGGCACT 1368
||||||||||||||||||||||| ||||||||| | || ||| |||||||||||||||||
Sbjct 1252 AAAATCGACTTTGTGAAGGGAGACTTCTTTGACCTCGCACATAACTTGAAGGCAGGCACT 1311
Query 1369 GTATTCCTATCGCCTCCTTGGGGAGGCCCTGATTATCTTAAAGTGAGTACGTATGATATG 1428
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1312 GTATTCCTATCGCCTCCTTGGGGAGGCCCTGATTATCTTAAAGCGAGCACGTATGATATG 1371
Query 1429 AAGACAATGTTGAGACCTCGTGACGGAGAGGCTCTATTTAAGGCGGCCATGAACATTGCG 1488
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1372 AAGACAATGTTGAGACCTCGTGACGGAGATGCTCTATTTAAGGCGGCCATGAACATTGCG 1431
Query 1489 TCAACAATCATTATGTTTCTTCCAAGAAATGTTGATATTAACCAATTGGCAGAACTAGCC 1548
||||||||||||||||||||||||||||||||||| ||||||||| | ||||| || |||
Sbjct 1432 TCAACAATCATTATGTTTCTTCCAAGAAATGTTGACATTAACCAACTAGCAGAGCTTGCC 1491
Query 1549 TTGTTGACATCTCCTCCATGGTCACTAGAGGCAAGTGTAGAGAAGAACTACTTAAATGGG 1608
|| | || |||||||||||||||||||||| | | | | |||||||| |||||||||
Sbjct 1492 TTATCAACGTCTCCTCCATGGTCACTAGAGGTA-G---A-A-AAGAACTATTTAAATGGG 1545
Query 1609 AAGCTGAAGGCGATAACAGCGTATTACGTCAGACAA 1644
|||||||||||| |||||||||||||||||||||||
Sbjct 1546 AAGCTGAAGGCGGTAACAGCGTATTACGTCAGACAA 1581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81575885625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5