BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473852
Length=998
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45230.1 | Symbols: | Protein of unknown function (DUF3223)... 1430 0.0
> AT1G45230.1 | Symbols: | Protein of unknown function (DUF3223)
| chr1:17169537-17171472 REVERSE LENGTH=1088
Length=1088
Score = 1430 bits (774), Expect = 0.0
Identities = 903/964 (94%), Gaps = 13/964 (1%)
Strand=Plus/Plus
Query 45 TGGCCATGAGCTTGGCTTCGATTTCCTCGTCGCCGCCGGTGGCTTCGCCGTACTTCCGCT 104
||||||||||||||||||||||| |||||||| | || |||||||| |||||||||||||
Sbjct 87 TGGCCATGAGCTTGGCTTCGATTCCCTCGTCGTCACCAGTGGCTTCACCGTACTTCCGCT 146
Query 105 GCCG-AGCTTACATCTTCTCCTTCGCGTCTTCACCTCTCTGTTTATATTTCCCGCGCGGT 163
|||| | ||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 147 GCCGTA-CTTACATCTTCTCCTTCTCTTCCTCACCTCTCTGTTTATATTTCCCGCGCGGT 205
Query 164 GACTCAACTTCCCTCAGGCCACGAGTTCGCGCCTTGCGAACGGAATCTGACGGTGCTAAA 223
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 GACTCTACTTCTCTCAGGCCACGAGTTCGCGCCTTGCGAACGGAATCTGACGGTGCTAAA 265
Query 224 ATCGGTAACACGGAGTCTTACGGCTCGGAATTGCTTCGTCGGCCGCGTATTGCGTCGGAG 283
||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 266 ATCGGTAACTCGGAGTCTTACGGCTCCGAATTGCTTCGTCGGCCTCGTATTGCGTCGGAG 325
Query 284 GAAAGCTCTGAAGAGGAGGAGGAAGA-G--GAAGAG-ACTGGTGAAGGTGATGAGTTCGT 339
|||||||| ||||| ||||||||||| | |||||| || | |||||||||||||||||
Sbjct 326 GAAAGCTCCGAAGAAGAGGAGGAAGAGGAAGAAGAGAAC-AGCGAAGGTGATGAGTTCGT 384
Query 340 TGATTGGGAAGATAAAATCCTTGAGGTTACTGTTCCTCTTGTTGGCTTCGTCAGGATGAT 399
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 385 CGATTGGGAAGATAAAATCCTTGAGGTTACTGTTCCTCTTGTTGGCTTCGTCAGAATGAT 444
Query 400 TCTTCACTCCGGAAAATATGCAAACCGAGATAGGCTAAGCCCCGAGCACGAGAGAACGAT 459
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 445 TCTTCACTCCGGAAAATATGCAAACCGAGATAGGCTAAGCCCCGAGCATGAGAGAACAAT 504
Query 460 TATTGAGATGCTGCTTCCTTATCACCCTGAGTTTGAGAAGAAGATTGGATGTGGTATAGA 519
|||||||||||| ||||||||||| ||||| | |||||||||||| ||||||||||||||
Sbjct 505 TATTGAGATGCTACTTCCTTATCATCCTGAATGTGAGAAGAAGATCGGATGTGGTATAGA 564
Query 520 CTATATTATGGTATGGCATCACCCAGATTTTGAGAGCTCTCGATGTATGTTTATAGTTCG 579
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 565 CTATATTATGGTAGGGCATCACCCGGATTTTGAGAGCTCTCGATGTATGTTTATAGTTCG 624
Query 580 AAAAGATGGAGAAGTAGTTGACTTTTCGTATTGGAAATGCATAAAAGGGCTGATAAAAAA 639
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 625 AAAAGATGGAGAAGTAGTCGACTTTTCGTATTGGAAATGCATAAAAGGTCTTATAAAAAA 684
Query 640 GAAGTATCCTCTGTACGCAGACAGTTTCATCCTCAGACATTTTCGCAAACGTAGGCAGAA 699
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 GAAGTATCCTCTGTATGCAGACAGTTTCATCCTCAGACATTTTCGCAAACGTAGGCAGAA 744
Query 700 CAGATGAATGAAGC-TTATGTAGATTCTCAAACTCAAACGCTCGTAGACTCAGATCCCCT 758
|||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| ||
Sbjct 745 CAGATGAATGAAGCCTTATGTAGATTCTCAAACTCAAATGCTCGTAGACTCGGATCCACT 804
Query 759 ACAAGGTTTTGGAGTGAGAACTCAAAGACAGAAGATTCGGTCACTATTTTTCTTTGAGTT 818
|||||||||||||||||||||||| | ||||||||| | |||||| ||||||||||||||
Sbjct 805 ACAAGGTTTTGGAGTGAGAACTCAGACACAGAAGATCCAGTCACTGTTTTTCTTTGAGTT 864
Query 819 GGAATTACGAATGGAATTTTCTAGAAAATATGGTTTCCGCAGGAGATATGAAGGA-TTAG 877
|||| ||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 865 GGAAATACGAATGGAACTTTCTAGAAAATATGGTTTCCGCAGGAGATATGA-GGAATTAG 923
Query 878 AACCATCAGAAATATT-AATATGTTCATTATCTT-AAATCTTTAGCGTTTATATGTTGA- 934
|||||||| || | || ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 924 AACCATCACAAGTCTTTAATATGTTCATTATCTTGAAATCTTTAGCGTTTATATGATGAT 983
Query 935 ATCTGTTACATTGAACTTATGTGCAGAGGTAGAGAAAACCAGTACACACTTGTGTGCAGG 994
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 984 ATCTGTTACATTGAACTTATGTGCAGAGGTAGAGAGAACCAGTACACACTTGTGAGCAGG 1043
Query 995 GCTT 998
||||
Sbjct 1044 GCTT 1047
Score = 84.2 bits (45), Expect = 2e-15
Identities = 45/45 (100%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 1 GGTTCCGATTCTCCGAATGGATAATGTAACCGTTTAGCTCTCTCT 45
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 GGTTCCGATTCTCCGAATGGATAATGTAACCGTTTAGCTCTCTCT 56
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48877825031
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5