BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473855
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting c... 1445 0.0
> AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting
complex gene 5 | chr1:17179302-17180530 FORWARD LENGTH=913
Length=913
Score = 1445 bits (782), Expect = 0.0
Identities = 869/911 (95%), Gaps = 6/911 (1%)
Strand=Plus/Plus
Query 1 AGAGTCAGAACAGAACACAAACGTAA--ACCaaaaaa-aaaaCAGAGCAAAATGGCCGTA 57
||||||||||||||||| |||||||| | |||||| ||||||||||||||||||||||
Sbjct 1 AGAGTCAGAACAGAACAAAAACGTAAGCAAAAAAAAATAAAACAGAGCAAAATGGCCGTA 60
Query 58 GTTTTACGTGGAGGCATCACCGGAGGATTTCTTCACCAACGTCGCGACACTTCATCCGTC 117
|||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 61 GTTTTACGTGGAGGCATCACCGGAGGATTTCTTCACCATCGTCGTGACGCTTCATCCGTC 120
Query 118 ATAACAAGAAGAATCTCATCCGTCAGAGCCGCAGGAGGAGGCATCAACCCAACAGTGGCT 177
|| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 121 ATCACAAGAAGAATCTCATCCGTCAAAGCCGCAGGAGGAGGCATCAACCCAACGGTGGCT 180
Query 178 GTTGAACGTGCCACGTGGCTACCTGGCCTCAACCCTCCTCCTTATCTTGATGGAAAGTTA 237
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 181 GTTGAACGTGCCACGTGGCTACCTGGACTAAACCCTCCTCCTTATCTTGATGGAAATTTA 240
Query 238 GCTGGAGATTACGGGTTTGACCCACTCGGGTTAGGAGAGGATCCAGAAAGTTTG-AGATG 296
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || ||
Sbjct 241 GCTGGAGATTACGGGTTTGACCCACTCGGGTTAGGAGAGGATCCGGAAAGCTTGAAG-TG 299
Query 297 GTATGTTCAAGCAGAACTTGTTCATTCTCGTTTCGCTATGCTCGGTGTTGCAGGAATACT 356
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 GTATGTTCAAGCAGAGCTTGTTCACTCTCGTTTCGCTATGCTCGGTGTTGCAGGAATACT 359
Query 357 CTTCACCGATCTGCTTCGGACCACAGGGATTCGTAATTTACCGGTTTGGTATGAAGCTGG 416
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTTCACTGATCTCCTTCGGACCACAGGGATTCGTAATTTACCGGTTTGGTATGAAGCTGG 419
Query 417 AGCTGTCAAATTTGATTTTGCTAGCACAAAAACACTCATAGTTGTACAGTTTTTACTTAT 476
|||||| ||||||||||||||||| |||||||| |||||||||||||||||| |||||||
Sbjct 420 AGCTGTGAAATTTGATTTTGCTAGTACAAAAACTCTCATAGTTGTACAGTTTCTACTTAT 479
Query 477 GGGGTTTGCTGAGACTAAAAGGTATGTGGATTATGTCTCTCCGGGCTCTCAAGCCAAAGA 536
||||||||||||||||||||||||| |||||| |||||||||||| || |||||||||||
Sbjct 480 GGGGTTTGCTGAGACTAAAAGGTATATGGATTTTGTCTCTCCGGGATCACAAGCCAAAGA 539
Query 537 AGGATCTTTTTTCTTTGGACTTGAAGCAGCACTCGAGGGGCTCGAGCCTGGATATCCCGG 596
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGGATCGTTTTTCTTTGGACTTGAAGCAGCACTCGAGGGGCTCGAGCCTGGATATCCCGG 599
Query 597 AGGACCGCTTTTAAACCCATTAGGCCTTGCTAAGGATATTAAAAATGCTCATGACTGGAA 656
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 600 AGGACCGCTTTTAAACCCATTAGGCCTTGCTAAGGATGTTCAAAATGCTCATGACTGGAA 659
Query 657 GCTTAAGGAGATCAAGAACGGTCGTCTAGCGATGATGGCGATGCTCGGGTTCTTTGTTCA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCTTAAGGAGATCAAGAACGGTCGTCTAGCGATGATGGCGATGCTCGGGTTCTTTGTTCA 719
Query 717 AGCCTCTGTGACTCACACTGGCCCTATCGATAACCTTGTCGAGCATCTCTCTAATCCATG 776
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 720 AGCCTCTGTGACTCACACTGGCCCTATTGATAACCTTGTTGAGCATCTCTCTAATCCATG 779
Query 777 GCATAAGACCATCATTCAAACCCTCTTCAGCTCTGCTTCTTAGGTACATTCTTTTGTAAC 836
||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct 780 GCATAAGACCATCATTCAAACCCTCTTCACCTCTACATCTTAGGTACATTCTTTTGTAAT 839
Query 837 GAAAA-TTCGATTATTCGACAAGTGTATCAATACCTTTATTTCATTTAAGAGTACAACAA 895
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAAAAATTCGATTATTCGACAAGTGTATCAATACCTTTATTTCATTTAAGAGTACAACAA 899
Query 896 ATCTATTCTAA 906
|||| ||||||
Sbjct 900 ATCTGTTCTAA 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44256283507
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5