BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473858
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45688.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2056 0.0
> AT1G45688.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G42860.1);
Has 258 Blast hits to 242 proteins in 39 species: Archae
- 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198;
Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). |
chr1:17191390-17193158 FORWARD LENGTH=1429
Length=1429
Score = 2056 bits (1113), Expect = 0.0
Identities = 1271/1344 (95%), Gaps = 24/1344 (2%)
Strand=Plus/Plus
Query 26 AGaaa-aaaaaaaGCTTCGTGCTCCTTCACCTTCCCAAATCGGaaaaaaaTGCACGCAAA 84
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 64 AGAAAGAAAAAAAGCTTCGTGCTCCTTCACCTTCCCAAATCGGAAAACAATGCACGCCAA 123
Query 85 AACCGATTCCGAGGTAACAAGCCTCGCAGCTTCATCACCAGCCAGATCTCCACGTAGACC 144
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 124 AACCGATTCCGAGGTAACAAGCCTCGCAGCATCATCACCAGCCAGATCTCCACGTAGACC 183
Query 145 AGTCTACTACGTCCAATCACCATCACGCGACTCTCACGACGGAGAAAAAACAGCAACATC 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 AGTCTACTACGTCCAATCACCATCACGCGACTCTCACGACGGAGAAAAAACAGCAACATC 243
Query 205 GTTTCACTCAACTCCGGTACTAAGTCCGATGGGATCTCCACCGCATTCTCACTCATCTAT 264
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 GTTTCACTCAACTCCAGTACTAAGTCCGATGGGATCTCCACCGCATTCTCACTCATCTAT 303
Query 265 GGGTCGTCACTCACGTGAATCATCCTCTAGTCGATTCTCTGGCTCTTTAAAGCCTGGATC 324
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 304 GGGTCGTCACTCACGTGAATCATCTTCTAGTCGATTCTCTGGCTCTTTAAAGCCTGGATC 363
Query 325 TAGAAAAGTCAACCCTAACGATGGTTCTAAACGGAAAGGTCACGGCGGAGAGAAACAGTG 384
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 364 TAGAAAAGTCAACCCTAACGATGGTTCTAAACGGAAAGGTCACGGCGGTGAGAAACAGTG 423
Query 385 GAAAGAATGTGCGGTGATTGAAGAAGAAGGTTTGTTAGATGATGGTGATAGAGACGGTGG 444
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GAAAGAATGTGCGGTTATTGAAGAAGAAGGTTTGTTAGATGATGGTGATAGAGACGGTGG 483
Query 445 TGTTCCTCGTCGGTGCTATGTTTTGGCTTTTATCGTTGGATTCTTTATTCTCTTTGGTTT 504
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TGTTCCTCGTCGTTGCTATGTTTTGGCTTTTATCGTTGGATTCTTTATTCTCTTTGGTTT 543
Query 505 CTTCTCTTTGATTCTCTATGGTGCTGCTAAACCTCA-GAAACCTAAGATCACTGTTAAGA 563
|||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||
Sbjct 544 CTTCTCTTTGATTCTCTATGGTGCTGCTAAACCT-ATGAAACCTAAGATCACTGTCAAGA 602
Query 564 GTATAACGTTTGAGACACTTAAGGTCCAAGCTGGTCAAGATGCTGGTGGTGTAGGAACCG 623
||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 603 GTATAACATTTGAGACGCTTAAGATCCAAGCTGGTCAAGATGCTGGTGGTGTAGGAACTG 662
Query 624 ATATGATCACGATGAATGCGACTTTGAGAATGTTGTATCGAAACACTGGGACTTTCTTTG 683
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 663 ATATGATCACTATGAACGCGACTTTGAGAATGTTGTATCGAAACACTGGAACTTTCTTTG 722
Query 684 GTGTTCATGTTACTTCAACTCCTATTGATCTCAGTTTCTCTCAGATCAAAATCGGTTCTG 743
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 723 GTGTTCATGTTACTTCAACTCCTATTGATCTCAGCTTCTCTCAAATCAAAATCGGTTCCG 782
Query 744 GATCTGTCAAGAAATTTTATCAGTCAAGGAAGAGTGAGAGAACAGTGGTGGTGCATGTGA 803
|||| || ||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 783 GATCCGTTAAGAAATTTTATCAGGGAAGGAAGAGTGAGAGAACAGTGTTGGTGCATGTGA 842
Query 804 TCGGAGAGAAGATTCCTTTATACGGAAGTGGTTCGACTTTACTCCCACCGGCACCTCCAG 863
|||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 843 TCGGAGAGAAGATTCCATTATATGGAAGTGGTTCGACTTTACTTCCACCGGCTCCTCCAG 902
Query 864 CTCCACTTCCCAAACCAAAGAAGAAGAAAGGAGCTCCCGTCGTTATTCCCGACCCGCCCG 923
| |||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 903 CACCACTTCCTAAACCCAAGAAGAAGAAAGGAGCTCCAGTCCCTATTCCCGACCCGCCCG 962
Query 924 CACCACCAGCACCGGTACCTATGACGCTCAGCTTTGTTGTCAGATCACGAGCTTACGTGT 983
||||||||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||
Sbjct 963 CACCACCAGCACCGGTACCAATGACGCTCAGCTTTGTCGTCCGATCACGAGCATACGTGT 1022
Query 984 TGGGGAGGCTAGTGCAGCCAAAGTTCTACAAGAAAATCGAGTGTGACATCAACTTCGAAC 1043
|||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1023 TGGGGAAGTTAGTGCAGCCAAAGTTCTATAAGAAAATCGAGTGTGACATCAACTTCGAAC 1082
Query 1044 ACAAGAATCTTAATAAGCATATAGCCATCACCAAGAATTGCACCGTCACTACAGTTTGAA 1103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1083 ACAAGAATCTTAATAAGCATATAGTCATCACCAAGAATTGCACCGTCACTACAGTTTGAA 1142
Query 1104 GGAAGGAAC-----------T-------TTT--AGTCGGCGCAATACGATGTCGTATAGA 1143
||||||||| | ||| |||||||||||||||||||||||||||
Sbjct 1143 GGAAGGAACAAAAGAAAAAGTAACAAACTTTTTAGTCGGCGCAATACGATGTCGTATAGA 1202
Query 1144 GTAACGTGATTTTACAGCTCAACGGGCAGCATTTTGGGTTGGTGGGGCAGCCACGTGGAG 1203
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1203 GTAACGTGATTTTACAGCTCAACGGGCAGCATTTTGGGTTGTTGGGGCAGCCACGTGGAG 1262
Query 1204 GTGCCCGAAGGAAAGAAGCATCGTCGGTGGCTTTAATTTACTTGAGTGGTTTATATTTGT 1263
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1263 GTGCCCGAAGAAAAGAAGCATTGTCGGTGGCTTTAATTTACTTGAGTGGTTCATATTTGT 1322
Query 1264 CTGTGGAAAATGTATAATTTTATAATTATGTGTACGATTGCACTGAAAA-CACGAGGAAT 1322
||||||||||| ||||||||||||||| |||||||||||| |||||||| ||||||||||
Sbjct 1323 CTGTGGAAAATATATAATTTTATAATTGTGTGTACGATTGGACTGAAAAACACGAGGAAT 1382
Query 1323 CACATTTTATTTATTTGTTTTTTA 1346
||||||||||||||||||||||||
Sbjct 1383 CACATTTTATTTATTTGTTTTTTA 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66264719400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5