BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473860
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45976.1 | Symbols: SBP1 | S-ribonuclease binding protein 1 ... 1587 0.0
> AT1G45976.1 | Symbols: SBP1 | S-ribonuclease binding protein
1 | chr1:17199325-17200735 FORWARD LENGTH=1079
Length=1079
Score = 1587 bits (859), Expect = 0.0
Identities = 988/1050 (94%), Gaps = 9/1050 (1%)
Strand=Plus/Plus
Query 1 AAGTTCATCGATGGCTCTTCATCCACACCTTCAAGACTCCAAGAATTTCAGAGACTTTTG 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 37 AAGTTCATCAATGGCTCTTCATCCACACCTTCAAGACTCCAAGAATTTCAGAGACTTTTG 96
Query 61 CGGAATCGACGGCCAGATTTCGCCGGAATTAGGGTTTGATAACTCTGCGAATCTCCATGA 120
||||||||||||||||||||||||||||||||| ||| | ||| | ||||||||||||
Sbjct 97 CGGAATCGACGGCCAGATTTCGCCGGAATTAGGATTTAACCGCTCAGAGAATCTCCATGA 156
Query 121 TCAATCTCAGCATCCTCCGTATATTCCTCCATTTCATGTTGCTGGTTTTGCACCGGGACC 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 157 TCAATCTCAGCATCCTCCATATATTCCTCCATTTCATGTTGCTGGTTTTGCACCGGGACC 216
Query 181 AGTTGTTCAAATTGATGGTTCTGATGGTGGTAATGGAGCTGAGTTAGAGTGGAACTATGG 240
|| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 217 GGTGGTTCAAATTGATGGTTCTGATGGTGGTAATGGAGCTGACTTTGAGTGGAACTATGG 276
Query 241 TCTTGGTCTTGAACCAAGACGTGAGAGGATAAAGGAACAAGATTTTTTGGAGAACAATTC 300
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 277 TCTTGGTCTTGAACCAAGACGTGAGAGGATAAAGGAACAAGATTTCTTGGAAAACAATTC 336
Query 301 TCAGATATCTTCTATTGATTTTTGGCAAGCTCGGTCTGTATCAACCGGATTGGGACTTTC 360
||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct 337 TCAGATATCTTCTATTGATTTTTTGCAAGCTCGGTCTGTATCAACCGGATTGGGTCTGTC 396
Query 361 TCTTGACAATGCTCGTATCGCTTCTTCTGATGGCTCTGCTTTGTTGTCGCTTGTTGGAGA 420
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 397 TCTTGACAATGCTCGTGTCGCTTCTTCTGATGGCTCTGCGTTGTTGTCGCTTGTTGGAGA 456
Query 421 CGATATTGATCGAGAGTTGCAGAGGCAGGATGCAGATATCGATAGGTTTCTTAAGATTCA 480
|||||||||||| ||||| ||| |||| ||||||||||||||||||||||| ||||||||
Sbjct 457 CGATATTGATCGCGAGTTACAGCGGCAAGATGCAGATATCGATAGGTTTCTCAAGATTCA 516
Query 481 GGGGGACCAGTTACGGCATGCTATCCTCGACAAGATCCAGAGGGGTCAACATAAAACAGT 540
|||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| ||
Sbjct 517 GGGGGATCAGTTACGGCATGCTATCCTCGACAAGATCAAGAGGGGTCAACAGAAAACGGT 576
Query 541 GTCACTCATGGAGGAAAAAGTTATCCAGAAACTCCGTGAGAAAGATGAGGAACTAGAGAT 600
|||||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||
Sbjct 577 GTCACTAATGGAGGAAAAAGTTGTTCAGAAACTCCGTGAGAAAGATGAGGAGCTAGAGAG 636
Query 601 GATAAACCGAAAGAACAAGGAGCTCGAGGTGCGTATGGAACAGCTAACAATGGAAGCTGA 660
||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 637 GATAAACCGAAAGAACAAGGAACTCGAGGTGCGAATGGAACAGCTGACAATGGAAGCTGA 696
Query 661 GGCATGGCAACAACGTGCAAGGTACAACGAGAACATGATCGCTGCACTCAACTACAATCT 720
||||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||||
Sbjct 697 GGCATGGCAGCAACGTGCAAAGTACAACGAGAATATGATTGCTGCACTCAACTACAATCT 756
Query 721 TGAACGAGCTCAAGGTCGACCAAGAGATAGCATTGAAGGATGTGGAGACAGCGAAGTAGA 780
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 757 TGACCGAGCTCAAGGTCGGCCAAGAGATAGCATTGAAGGATGTGGAGACAGTGAAGTAGA 816
Query 781 TGACACAGCTTCTTGCTTCAATGGCAGAaacaacaacaataacaacaacaataacaCGAA 840
|||||||||||||||||||||||| | | | || |||| |||||||||||||||
Sbjct 817 TGACACAGCTTCTTGCTTCAATGG--G--A-GA-GAC---AACAGCAACAATAACACGAA 867
Query 841 GCCGATGATGATGTGCAGGTTTTGTGGAGTGAGAGAAGTGTGTATGTTGTTGTTGCCATG 900
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 868 GACGATGATGATGTGCAGGTTTTGTGGAGTGAGAGAAATGTGTATGTTGTTGTTGCCATG 927
Query 901 TAAGCATATGTGTTTGTGTAAGGAGTGTGAGAGGAAGCTTAGCTCCTGTCCTTTGTGTCA 960
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 928 TAATCATATGTGTTTGTGTAAGGAGTGTGAGAGGAAGCTTAGCTCTTGTCCTTTGTGTCA 987
Query 961 GTCTTCTAAGTTTCTAGGTATGGAAGTATACATGTGATTGTGATTTGACTAAACTAATGT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 GTCTTCTAAGTTTCTAGGTATGGAAGTATACATGTGATTGTGATTTGACTAAACTAATGT 1047
Query 1021 CTAATTAGTTAACGAACGAACTCTATTTGT 1050
||||||||||||| |||||||| |||||||
Sbjct 1048 CTAATTAGTTAACAAACGAACTTTATTTGT 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51490000675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5