BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473860 Length=1050 Score E Sequences producing significant alignments: (Bits) Value AT1G45976.1 | Symbols: SBP1 | S-ribonuclease binding protein 1 ... 1587 0.0 > AT1G45976.1 | Symbols: SBP1 | S-ribonuclease binding protein 1 | chr1:17199325-17200735 FORWARD LENGTH=1079 Length=1079 Score = 1587 bits (859), Expect = 0.0 Identities = 988/1050 (94%), Gaps = 9/1050 (1%) Strand=Plus/Plus Query 1 AAGTTCATCGATGGCTCTTCATCCACACCTTCAAGACTCCAAGAATTTCAGAGACTTTTG 60 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 37 AAGTTCATCAATGGCTCTTCATCCACACCTTCAAGACTCCAAGAATTTCAGAGACTTTTG 96 Query 61 CGGAATCGACGGCCAGATTTCGCCGGAATTAGGGTTTGATAACTCTGCGAATCTCCATGA 120 ||||||||||||||||||||||||||||||||| ||| | ||| | |||||||||||| Sbjct 97 CGGAATCGACGGCCAGATTTCGCCGGAATTAGGATTTAACCGCTCAGAGAATCTCCATGA 156 Query 121 TCAATCTCAGCATCCTCCGTATATTCCTCCATTTCATGTTGCTGGTTTTGCACCGGGACC 180 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 157 TCAATCTCAGCATCCTCCATATATTCCTCCATTTCATGTTGCTGGTTTTGCACCGGGACC 216 Query 181 AGTTGTTCAAATTGATGGTTCTGATGGTGGTAATGGAGCTGAGTTAGAGTGGAACTATGG 240 || |||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 217 GGTGGTTCAAATTGATGGTTCTGATGGTGGTAATGGAGCTGACTTTGAGTGGAACTATGG 276 Query 241 TCTTGGTCTTGAACCAAGACGTGAGAGGATAAAGGAACAAGATTTTTTGGAGAACAATTC 300 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 277 TCTTGGTCTTGAACCAAGACGTGAGAGGATAAAGGAACAAGATTTCTTGGAAAACAATTC 336 Query 301 TCAGATATCTTCTATTGATTTTTGGCAAGCTCGGTCTGTATCAACCGGATTGGGACTTTC 360 ||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || Sbjct 337 TCAGATATCTTCTATTGATTTTTTGCAAGCTCGGTCTGTATCAACCGGATTGGGTCTGTC 396 Query 361 TCTTGACAATGCTCGTATCGCTTCTTCTGATGGCTCTGCTTTGTTGTCGCTTGTTGGAGA 420 |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 397 TCTTGACAATGCTCGTGTCGCTTCTTCTGATGGCTCTGCGTTGTTGTCGCTTGTTGGAGA 456 Query 421 CGATATTGATCGAGAGTTGCAGAGGCAGGATGCAGATATCGATAGGTTTCTTAAGATTCA 480 |||||||||||| ||||| ||| |||| ||||||||||||||||||||||| |||||||| Sbjct 457 CGATATTGATCGCGAGTTACAGCGGCAAGATGCAGATATCGATAGGTTTCTCAAGATTCA 516 Query 481 GGGGGACCAGTTACGGCATGCTATCCTCGACAAGATCCAGAGGGGTCAACATAAAACAGT 540 |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| || Sbjct 517 GGGGGATCAGTTACGGCATGCTATCCTCGACAAGATCAAGAGGGGTCAACAGAAAACGGT 576 Query 541 GTCACTCATGGAGGAAAAAGTTATCCAGAAACTCCGTGAGAAAGATGAGGAACTAGAGAT 600 |||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||||| Sbjct 577 GTCACTAATGGAGGAAAAAGTTGTTCAGAAACTCCGTGAGAAAGATGAGGAGCTAGAGAG 636 Query 601 GATAAACCGAAAGAACAAGGAGCTCGAGGTGCGTATGGAACAGCTAACAATGGAAGCTGA 660 ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| Sbjct 637 GATAAACCGAAAGAACAAGGAACTCGAGGTGCGAATGGAACAGCTGACAATGGAAGCTGA 696 Query 661 GGCATGGCAACAACGTGCAAGGTACAACGAGAACATGATCGCTGCACTCAACTACAATCT 720 ||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||| Sbjct 697 GGCATGGCAGCAACGTGCAAAGTACAACGAGAATATGATTGCTGCACTCAACTACAATCT 756 Query 721 TGAACGAGCTCAAGGTCGACCAAGAGATAGCATTGAAGGATGTGGAGACAGCGAAGTAGA 780 ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 757 TGACCGAGCTCAAGGTCGGCCAAGAGATAGCATTGAAGGATGTGGAGACAGTGAAGTAGA 816 Query 781 TGACACAGCTTCTTGCTTCAATGGCAGAaacaacaacaataacaacaacaataacaCGAA 840 |||||||||||||||||||||||| | | | || |||| ||||||||||||||| Sbjct 817 TGACACAGCTTCTTGCTTCAATGG--G--A-GA-GAC---AACAGCAACAATAACACGAA 867 Query 841 GCCGATGATGATGTGCAGGTTTTGTGGAGTGAGAGAAGTGTGTATGTTGTTGTTGCCATG 900 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 868 GACGATGATGATGTGCAGGTTTTGTGGAGTGAGAGAAATGTGTATGTTGTTGTTGCCATG 927 Query 901 TAAGCATATGTGTTTGTGTAAGGAGTGTGAGAGGAAGCTTAGCTCCTGTCCTTTGTGTCA 960 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 928 TAATCATATGTGTTTGTGTAAGGAGTGTGAGAGGAAGCTTAGCTCTTGTCCTTTGTGTCA 987 Query 961 GTCTTCTAAGTTTCTAGGTATGGAAGTATACATGTGATTGTGATTTGACTAAACTAATGT 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 988 GTCTTCTAAGTTTCTAGGTATGGAAGTATACATGTGATTGTGATTTGACTAAACTAATGT 1047 Query 1021 CTAATTAGTTAACGAACGAACTCTATTTGT 1050 ||||||||||||| |||||||| ||||||| Sbjct 1048 CTAATTAGTTAACAAACGAACTTTATTTGT 1077 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51490000675 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5