BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473862
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
AT1G46264.1 | Symbols: AT-HSFB4, HSFB4, SCZ | heat shock transc... 1827 0.0
> AT1G46264.1 | Symbols: AT-HSFB4, HSFB4, SCZ | heat shock transcription
factor B4 | chr1:17224842-17226280 FORWARD LENGTH=1206
Length=1206
Score = 1827 bits (989), Expect = 0.0
Identities = 1146/1216 (94%), Gaps = 33/1216 (3%)
Strand=Plus/Plus
Query 1 AAACAAACACAAAGctcttctcttttctctctctctctctctctttctctctcgaactct 60
||||||||||||| |||||||||||| ||||||||||| ||||| ||| |||||||||||
Sbjct 1 AAACAAACACAAATCTCTTCTCTTTT-TCTCTCTCTCTGTCTCTCTCTTTCTCGAACTCT 59
Query 61 ctAATGGCGATGATGGTTGAGAATAGCTACGGTGGTTACGGTGGTGGTAACGGAGAAAGG 120
||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||
Sbjct 60 CTAATGGCGATGATGGTCGAGAATAGCTACGGTGGTTACGGTGGTGGCGGCGGAGAGAGG 119
Query 121 ATACAACTTATGGTCGAAGGTCAAGGCAAAGCTGTTCCGGCACCGTTTTTGACAAAGACT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 120 ATACAACTTATGGTCGAAGGTCAAGGCAAAGCTGTTCCGGCTCCGTTTTTGACAAAGACT 179
Query 181 TATCAACTTGTTGATGATCCTGCGACGGATCATGTCGTTTCTTGGGGTGATGATGATACT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TATCAACTTGTTGATGATCCTGCGACGGATCATGTCGTTTCTTGGGGTGATGATGATACT 239
Query 241 ACTTTTGTTGTTTGGCGTCCACCGGAGTTTGCTCGTGACCTTCTTCCTAATTACTTTAAA 300
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 240 ACTTTTGTCGTTTGGCGTCCACCGGAGTTTGCTCGTGATCTTCTTCCTAATTACTTTAAA 299
Query 301 CATAACAACTTCTCTAGCTTCGTTCGTCAGCTCAACACTTATGGTTTCAGAAAGATTGTA 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 CATAACAACTTCTCTAGCTTCGTTCGTCAGCTCAATACTTATGGTTTCAGAAAGATTGTA 359
Query 361 CCAGATCGATGGGAGTTCGCGAACGAGTTTTTCAAGAGAGGAGAGAAACATTTACTCTGC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCAGATCGATGGGAGTTCGCGAACGAGTTTTTCAAGAGAGGAGAGAAACATTTACTCTGC 419
Query 421 GAAATCTACCGCCGCAAAACATCTCAAATGATACCACAACAACACTCTCCATTCATGTCA 480
|||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 420 GAAATCCACCGCCGTAAAACATCTCAAATGATACCACAACAACACTCTCCGTTCATGTCA 479
Query 481 CACCACCACGCTCCGCCGCAGATTCCATTCTCCGGCGGTTCTTTCTTCCCATTACCACCA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CACCACCACGCTCCGCCGCAGATTCCATTCTCCGGCGGTTCTTTCTTCCCATTACCACCA 539
Query 541 C-A--TGTCACCACTCCAGAAGAAGATCATTACTGGTGTGAC---TCACCACCGTCAAGA 594
| | ||||||||||||||||||||| ||||||||||| ||| |||||||||||||||
Sbjct 540 CCACGTGTCACCACTCCAGAAGAAGACCATTACTGGTGCGACGACTCACCACCGTCAAGA 599
Query 595 CCAAGAGTCATACCACCACAAACAACCACCATTGACACGGCGGCGCAAGTAACAGCATTG 654
||| |||||||||||| | | ||| | |||||||||||||||||||||| ||||||
Sbjct 600 CCACGAGTCATACCAC-A-A--CAA--A---TTGACACGGCGGCGCAAGTAACGGCATTG 650
Query 655 AGTGAAGACAACGAGAGATTACGACGAAGCAACACAGTGTTAATGTCTGAACTAGCTCAC 714
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 651 AGTGAAGACAACGAGAGATTACGACGAAGCAACACAGTGTTAATGTCGGAACTAGCTCAC 710
Query 715 ATGAAGAAACTCTACAACGACATTATCTACTTTGTTCAAAATCATGTCAAGCCTGTTGCT 774
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 711 ATGAAGAAACTCTACAACGACATTATCTACTTTGTTCAAAACCATGTCAAGCCTGTTGCT 770
Query 775 CCAAGTAAC---TCTAACTATCTCTCTTCATTTCTCCAGAA--A-CAACAACAACAACCT 828
||||||||| |||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 771 CCAAGTAACAACTCTAGTTATCTCTCTTCATTTCTCCAGAAGCAACAACAACAACAACCT 830
Query 829 CCAACACTTGATTATTACAATACTGCCACTGTCAATGCCACTAATCTCCATGCTTTGAAC 888
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 831 CCAACACTTGATTATTACAATACTGCCACTGTCAATGCCACTAATCTCAATGCTTTGAAC 890
Query 889 TCATCTCCACCAACTTCACAAAGCTCTATTACAGTTCTTGAAGATGA-CACTAATCATCA 947
||||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||
Sbjct 891 TCATCTCCACCAACTTCACAAAGCTCTATTACAGTTCTTGAAGATGATCAC-ACTAATCA 949
Query 948 TCATGATCAGAGTAATATGAGAAAGACAAAGCTTTTTGGAGTTTCATTGCCTTCTTCTAA 1007
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 950 TCATGATCAGAGTAATATGAGAAAGACAAAGCTTTTTGGAGTTTCGTTGCCTTCTTCTAA 1009
Query 1008 GAAGAGATCACATCATTTCTCAGACCAAACAAGCAAAACTCGACTTGTGTTGGATAAATC 1067
||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 1010 GAAGAGATCACATCATTTCTCAGACCAAACAAGCAAAACGAGACTTGTGTTGGATCAGTC 1069
Query 1068 TGATCTTGCTTTGAATCTCATGACTGCTTCTACACGTTAAGAGAGAGTCTTTGttttttt 1127
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1070 TGATCTTGCTTTGAATCTCATGACTGCTTCTACACGTTAAGAGAGTGTCTTTGTTTTATT 1129
Query 1128 tttttttGAAAGTATCAGAATCAGTCAGCATTATTAGCACTAATGTTGTTATGATGAAGA 1187
||| | || ||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 1130 TTTGAT--AA-GTATC----T-A-TCAGCATTATTAGCACTAATGTTGTTATGATGAAGA 1180
Query 1188 TGAATATTATGGTTAA 1203
|||||||| |||||||
Sbjct 1181 TGAATATTCTGGTTAA 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59086041465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5